EWM20923.1, cds9741 (CDS) Nannochloropsis gaditana

Overview
NameEWM20923.1
Unique Namecds9741
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:70389..70508 +
Alignment locationKK037256.1:70597..72555 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20923.1
Productrho gtpase activating protein 2
Orig transcript idgnl|cribi|Naga_100061g22.8556.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:70389..70508 +
KK037256.1supercontigKK037256.1:70597..72555 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR011993PH-like_dom
IPR001849PH_domain
Homology
BLAST of EWM20923.1 vs. NCBI_GenBank
Match: gi|585100879|gb|EWM20923.1| (rho gtpase activating protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 1402.5 bits (3629), Expect = 0.000e+0
Identity = 692/692 (100.00%), Postives = 692/692 (100.00%), Query Frame = 0
Query:    1 MATSLQGFPSEQATAHTLHTKTIRLPGLHRLLLRVQIADLPPSRRALWKDTHHQMRDVVALAGTTAKTIIRTLIESEIPAVSDRDIARFALVMVYPTREVDGSLTHLMRTLNPHERPIKLVNSMLVEMEEMSKGTRKEGVRAIGMADSTGGCPDSSDEGAPGGGREANYETQYGPQIGRDKGEGLIRVMSPRTAFTREQLLDEHLLSWVLKDTEGPPLDFPGYLSGPEASDDETSPTCPAASWFSDQAGWSKPGLSGYLLKRSSRDPCLWRRRWCVLGEDKFWYMKAKHRRSMRGKAAFIALMGMQVLDLECGEGESRELQRVAPLGVEVQTADRVFVFRALSREQQAEWVQAMRRGVRLATENEWLAMAELVVGEEEKARERRIEGVVERAWAACTERGRDNWKFEEGVTKGKECNASLNVEMGVAGAEERHPETRHVPSARLSVERESRGMVKSRARELLRAKGSNLLGKGGINAEGKVERDRREKDGRRMELSELLGFAIAVQEYREVCRLGDGPVLASSLKMWAKAQAVYDAFLRRWVRLLHDLERERGATGGLLKEEGRDGSVLPEWAGAIYIERQLLEYAACERRQRGGASLSRGAARQGKKDDKRAGTAKTKLRALPRLLNKHGDSFAADPINTAPSVSLECEEAELGRSLPPPPKELFDETLQELERSAQLIIERDSNKRNEEE 692
            MATSLQGFPSEQATAHTLHTKTIRLPGLHRLLLRVQIADLPPSRRALWKDTHHQMRDVVALAGTTAKTIIRTLIESEIPAVSDRDIARFALVMVYPTREVDGSLTHLMRTLNPHERPIKLVNSMLVEMEEMSKGTRKEGVRAIGMADSTGGCPDSSDEGAPGGGREANYETQYGPQIGRDKGEGLIRVMSPRTAFTREQLLDEHLLSWVLKDTEGPPLDFPGYLSGPEASDDETSPTCPAASWFSDQAGWSKPGLSGYLLKRSSRDPCLWRRRWCVLGEDKFWYMKAKHRRSMRGKAAFIALMGMQVLDLECGEGESRELQRVAPLGVEVQTADRVFVFRALSREQQAEWVQAMRRGVRLATENEWLAMAELVVGEEEKARERRIEGVVERAWAACTERGRDNWKFEEGVTKGKECNASLNVEMGVAGAEERHPETRHVPSARLSVERESRGMVKSRARELLRAKGSNLLGKGGINAEGKVERDRREKDGRRMELSELLGFAIAVQEYREVCRLGDGPVLASSLKMWAKAQAVYDAFLRRWVRLLHDLERERGATGGLLKEEGRDGSVLPEWAGAIYIERQLLEYAACERRQRGGASLSRGAARQGKKDDKRAGTAKTKLRALPRLLNKHGDSFAADPINTAPSVSLECEEAELGRSLPPPPKELFDETLQELERSAQLIIERDSNKRNEEE
Sbjct:    1 MATSLQGFPSEQATAHTLHTKTIRLPGLHRLLLRVQIADLPPSRRALWKDTHHQMRDVVALAGTTAKTIIRTLIESEIPAVSDRDIARFALVMVYPTREVDGSLTHLMRTLNPHERPIKLVNSMLVEMEEMSKGTRKEGVRAIGMADSTGGCPDSSDEGAPGGGREANYETQYGPQIGRDKGEGLIRVMSPRTAFTREQLLDEHLLSWVLKDTEGPPLDFPGYLSGPEASDDETSPTCPAASWFSDQAGWSKPGLSGYLLKRSSRDPCLWRRRWCVLGEDKFWYMKAKHRRSMRGKAAFIALMGMQVLDLECGEGESRELQRVAPLGVEVQTADRVFVFRALSREQQAEWVQAMRRGVRLATENEWLAMAELVVGEEEKARERRIEGVVERAWAACTERGRDNWKFEEGVTKGKECNASLNVEMGVAGAEERHPETRHVPSARLSVERESRGMVKSRARELLRAKGSNLLGKGGINAEGKVERDRREKDGRRMELSELLGFAIAVQEYREVCRLGDGPVLASSLKMWAKAQAVYDAFLRRWVRLLHDLERERGATGGLLKEEGRDGSVLPEWAGAIYIERQLLEYAACERRQRGGASLSRGAARQGKKDDKRAGTAKTKLRALPRLLNKHGDSFAADPINTAPSVSLECEEAELGRSLPPPPKELFDETLQELERSAQLIIERDSNKRNEEE 692          
BLAST of EWM20923.1 vs. NCBI_GenBank
Match: gi|299115138|emb|CBN75505.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 92.8189 bits (229), Expect = 1.099e-15
Identity = 60/188 (31.91%), Postives = 92/188 (48.94%), Query Frame = 0
Query:  208 WVLKDTEGPPLD---FPGYLSGPEASDDETSPTCPAASWFSDQAGWSKPGLSGYLLKRSSRDPCLWRRRWCVLGEDKFWYMKAKHRRSMRGKAAFIALMGMQVLDLECGEGESRELQRVAPLGVEVQTADRVFVFRALSREQQAEWVQAMRRGVRLATENEWLAMAELVVGEEEKARERRIEGVVERA 392
            W+ ++   P LD       +SG + S+DE       A W  D  G  +    GYL K+S  DP LWRRRWC+L +D+ W +++K  +S R +    +               S  L        E+ + +RV  FRA SR +Q  WV  ++R  R A E+ ++++AE +V +EE AR RR+   +  A
Sbjct:  449 WIYRERTAPALDPDELQVEVSGSDTSEDERR-----AGWI-DLRGLGQGHYCGYLQKKSRSDPNLWRRRWCILADDRLWLLRSKSEQSGRRRGGGRS--------------HSFSLALAPSHCFELHSQNRVHTFRAESRAKQVAWVGTLQRHARQAAEDSYMSVAEHMVCDEEYARCRRLNVTLSSA 616          
BLAST of EWM20923.1 vs. NCBI_GenBank
Match: gi|813233372|ref|XP_012213476.1| (hypothetical protein SPRG_18648, partial [Saprolegnia parasitica CBS 223.65] >gi|641518515|gb|KDO15816.1| hypothetical protein SPRG_18648, partial [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 72.0182 bits (175), Expect = 1.048e-9
Identity = 53/174 (30.46%), Postives = 85/174 (48.85%), Query Frame = 0
Query:  206 LSWVLKDTEGPPLDFPGYLSGPEASDDETSPTCPAASWFSDQAGWSKPGL-SGYLLKRSSRDPCLWRRRWCVLGEDKFWYMKAK-HRRSMRGKAAFIALMGMQVLDLECGEGESRELQRVAPLGVEVQTADRVFVFRALSREQQAEWVQAMRRGVRLATENEWLAMAELVVGEE 377
            L +V KDT   P+D    L  P  S+  +  T  A   F  + G    G+ SG L K S +D  +WR RW VL EDK +Y K++ ++R +      I L+   ++  +             P   E+ T+ RV+   A S +    W+ A+ R +RL +EN+ L+ AE+++ +E
Sbjct:  183 LKFVFKDTRAKPIDLDADLE-PRTSNTNSQDTVFA---FPQKLGQ---GIRSGTLKKASLKDANVWRTRWFVLKEDKLFYCKSEMNQRDITA----IPLLNSCIVKADVQ----------IPHCFELHTSRRVYRLCAASDDLMVGWIHALHREIRLCSENQALSKAEIIIVDE 335          
BLAST of EWM20923.1 vs. NCBI_GenBank
Match: gi|813164966|ref|XP_012203543.1| (hypothetical protein SPRG_09033 [Saprolegnia parasitica CBS 223.65] >gi|641531674|gb|KDO25734.1| hypothetical protein SPRG_09033 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 72.4034 bits (176), Expect = 1.207e-9
Identity = 54/173 (31.21%), Postives = 84/173 (48.55%), Query Frame = 0
Query:  206 LSWVLKDTEGPPLDFPGYLSGPEASDDETSPTCPAASWFSDQAGWSKPGL-SGYLLKRSSRDPCLWRRRWCVLGEDKFWYMKAKHRRSMRGKAAFIALMGMQVLDLECGEGESRELQRVAPLGVEVQTADRVFVFRALSREQQAEWVQAMRRGVRLATENEWLAMAELVVGEE 377
            L +V KDT   P+D    L  P  S+  +  T  A   F  + G    G+ SG L K S +D  +WR RW VL EDK +Y K++   + R   A I L+   ++  +             P   E+ T+ RV+   A S +    W+ A+ R +RL +EN+ L+ AE+++ +E
Sbjct:  165 LKFVFKDTRAKPIDLDADLE-PRTSNTNSQDTVFA---FPQKLG---QGIRSGTLKKASLKDANVWRTRWFVLKEDKLFYCKSE--MNQRDITA-IPLLNSCIVKADVQ----------IPHCFELHTSRRVYRLCAASDDLMVGWIHALHREIRLCSENQALSKAEIIIVDE 317          
BLAST of EWM20923.1 vs. NCBI_GenBank
Match: gi|669144440|ref|XP_008607782.1| (hypothetical protein SDRG_03913 [Saprolegnia diclina VS20] >gi|530740716|gb|EQC38958.1| hypothetical protein SDRG_03913 [Saprolegnia diclina VS20])

HSP 1 Score: 72.0182 bits (175), Expect = 1.529e-9
Identity = 54/173 (31.21%), Postives = 84/173 (48.55%), Query Frame = 0
Query:  206 LSWVLKDTEGPPLDFPGYLSGPEASDDETSPTCPAASWFSDQAGWSKPGL-SGYLLKRSSRDPCLWRRRWCVLGEDKFWYMKAKHRRSMRGKAAFIALMGMQVLDLECGEGESRELQRVAPLGVEVQTADRVFVFRALSREQQAEWVQAMRRGVRLATENEWLAMAELVVGEE 377
            L +V KDT   P+D    L  P  S+  +  T  A   F  + G    G+ SG L K S +D  +WR RW VL EDK +Y K++   + R   A I L+   ++  +             P   E+ T+ RV+   A S +    W+ A+ R +RL +EN+ L+ AE+++ +E
Sbjct:  165 LKFVFKDTRAKPIDLDADLE-PRTSNTNSQDTVFA---FPQKLG---QGMRSGTLKKASLKDANVWRTRWFVLKEDKLFYCKSE--MNQRDITA-IPLLNSCIVKADVQ----------IPHCFELHTSRRVYRLCAGSDDLMVAWIHALHREIRLCSENQALSKAEIIIVDE 317          
BLAST of EWM20923.1 vs. NCBI_GenBank
Match: gi|673044345|ref|XP_008876133.1| (hypothetical protein H310_11302 [Aphanomyces invadans] >gi|574468413|gb|ETV95432.1| hypothetical protein H310_11302 [Aphanomyces invadans])

HSP 1 Score: 70.8626 bits (172), Expect = 4.533e-9
Identity = 52/187 (27.81%), Postives = 88/187 (47.06%), Query Frame = 0
Query:  206 LSWVLKDTEGPPLDFPGYLSGPEASDDETSPTCPAASW-FSDQAGWS-----------KPGL---SGYLLKRSSRDPCLWRRRWCVLGEDKFWYMKAKHRRSMRGKAAFIALMGMQVLDLECGEGESRELQRVAPLGVEVQTADRVFVFRALSREQQAEWVQAMRRGVRLATENEWLAMAELVVGEE 377
            L ++ KD  G P+D    L   E + + ++PT   + +   +Q   +           K GL   +G L K S +D  +WR RW VL +DK +Y K++  +  R   A I L+  Q++  +           + P   E+ T+ RV+ F + + +    W+ A+ R +RLA EN+ L  AE  + +E
Sbjct:  205 LKFIFKDIRGKPIDLEAEL---ELTPNYSNPTSALSQYGHPNQHNMAASQDTVFLLPQKLGLGLRAGTLKKASLKDANVWRSRWFVLKDDKLYYCKSEFNQ--RDITA-IPLLNAQIVKQDA----------LVPHCFELHTSRRVYRFCSATDDSMMAWIHALHREIRLAAENQMLTKAESFIVDE 375          
BLAST of EWM20923.1 vs. NCBI_GenBank
Match: gi|698802792|ref|XP_009834425.1| (hypothetical protein, variant 2 [Aphanomyces astaci] >gi|698802794|ref|XP_009834426.1| hypothetical protein, variant 1 [Aphanomyces astaci] >gi|574110802|gb|ETV76300.1| hypothetical protein, variant 1 [Aphanomyces astaci] >gi|574110803|gb|ETV76301.1| hypothetical protein, variant 2 [Aphanomyces astaci])

HSP 1 Score: 69.707 bits (169), Expect = 7.157e-9
Identity = 59/220 (26.82%), Postives = 99/220 (45.00%), Query Frame = 0
Query:  206 LSWVLKDTEGPPLDFPGYLS-GPEASDDETSPTC--------PAASWFSDQAGWSKP-----GL-SGYLLKRSSRDPCLWRRRWCVLGEDKFWYMKAKHRRSMRGKAAFIALMGMQVLDLECGEGESRELQRVAPLGVEVQTADRVFVFRALSREQQAEWVQAMRRGVRLATENEWLAMAELVVGEE-----EKARER---RIEGVVERAWAACTERGRD 402
            L ++ KD  G P+D    L   P  S+  T+           P  +  S    +  P     GL +G L K S +D  +WR RW VL +DK +Y K++   + +     I L+   ++  +           + P   E+ T+ RV+ F   + +    W+QA+ R +RLA EN+ L  AE+ + +E     E+ +ER    + G++   +AA  +  RD
Sbjct:   78 LKFIFKDIRGKPIDLEAELELTPNYSNSTTTTLSQYGSHAAHPRNTTMSQDTVFLLPQKLGLGLRAGPLKKASVKDANVWRSRWFVLKDDKLYYCKSE---ANQRDVTAIPLLNAHIVKQDA----------LVPHCFELHTSRRVYRFCTDTDDIMMAWIQALHREIRLAAENQVLTKAEIFIVDEAVTTCERKQERAPFAVSGIL--GYAALRKMFRD 282          
BLAST of EWM20923.1 vs. NCBI_GenBank
Match: gi|1173942411|gb|OQR91422.1| (hypothetical protein ACHHYP_04724 [Achlya hypogyna])

HSP 1 Score: 69.707 bits (169), Expect = 8.697e-9
Identity = 56/197 (28.43%), Postives = 90/197 (45.69%), Query Frame = 0
Query:  206 LSWVLKDTEGPPLDFPGYLSGPEASDDETSPTCPAASWFSDQAGWSKPGL-SGYLLKRSSRDPCLWRRRWCVLG------------EDKFWYMKAKHRRSMRGKAAFIALMGMQVLDLECGEGESRELQRVAPLGVEVQTADRVFVFRALSREQQAEWVQAMRRGVRLATENEWLAMAELVVGEEEKARERRIEGVV 389
            L +V KDT   PLD    L  P  ++  +  T  A   F  + G    G+ SG L K S +D  +WR RW VL             EDK +Y K++   + R   A I L+   ++  +             P   E+ T+ RV+   A S +Q   W+ A+ R +RL +EN+ L+ AE+++ +E  +    + G++
Sbjct:  157 LKFVFKDTRAKPLDLDADLE-PRTANTNSQDTVFA---FPQKLG---NGIRSGTLKKASLKDANVWRTRWFVLKARVQAFVDLASQEDKLFYCKSE--MNQRDITA-IPLLNSCIVKADVQ----------IPHCFELHTSRRVYRLCATSDDQMVAWIHALHREIRLCSENQALSKAEIIIVDENTSTPFAVSGIL 333          
BLAST of EWM20923.1 vs. NCBI_GenBank
Match: gi|698802790|ref|XP_009834424.1| (hypothetical protein H257_09767 [Aphanomyces astaci] >gi|574110801|gb|ETV76299.1| hypothetical protein H257_09767 [Aphanomyces astaci])

HSP 1 Score: 69.707 bits (169), Expect = 8.891e-9
Identity = 59/220 (26.82%), Postives = 99/220 (45.00%), Query Frame = 0
Query:  206 LSWVLKDTEGPPLDFPGYLS-GPEASDDETSPTC--------PAASWFSDQAGWSKP-----GL-SGYLLKRSSRDPCLWRRRWCVLGEDKFWYMKAKHRRSMRGKAAFIALMGMQVLDLECGEGESRELQRVAPLGVEVQTADRVFVFRALSREQQAEWVQAMRRGVRLATENEWLAMAELVVGEE-----EKARER---RIEGVVERAWAACTERGRD 402
            L ++ KD  G P+D    L   P  S+  T+           P  +  S    +  P     GL +G L K S +D  +WR RW VL +DK +Y K++   + +     I L+   ++  +           + P   E+ T+ RV+ F   + +    W+QA+ R +RLA EN+ L  AE+ + +E     E+ +ER    + G++   +AA  +  RD
Sbjct:  216 LKFIFKDIRGKPIDLEAELELTPNYSNSTTTTLSQYGSHAAHPRNTTMSQDTVFLLPQKLGLGLRAGPLKKASVKDANVWRSRWFVLKDDKLYYCKSE---ANQRDVTAIPLLNAHIVKQDA----------LVPHCFELHTSRRVYRFCTDTDDIMMAWIQALHREIRLAAENQVLTKAEIFIVDEAVTTCERKQERAPFAVSGIL--GYAALRKMFRD 420          
BLAST of EWM20923.1 vs. NCBI_GenBank
Match: gi|675184879|ref|XP_008901324.1| (hypothetical protein PPTG_08142 [Phytophthora parasitica INRA-310] >gi|567967562|gb|ETK92734.1| hypothetical protein L915_03982 [Phytophthora parasitica] >gi|567996025|gb|ETL46149.1| hypothetical protein L916_03928 [Phytophthora parasitica] >gi|568025265|gb|ETL99283.1| hypothetical protein L917_03843 [Phytophthora parasitica] >gi|568098535|gb|ETN13262.1| hypothetical protein PPTG_08142 [Phytophthora parasitica INRA-310] >gi|570957695|gb|ETP22674.1| hypothetical protein F441_04077 [Phytophthora parasitica CJ01A1] >gi|570993279|gb|ETP50652.1| hypothetical protein F442_04087 [Phytophthora parasitica P10297])

HSP 1 Score: 67.781 bits (164), Expect = 4.388e-8
Identity = 56/195 (28.72%), Postives = 85/195 (43.59%), Query Frame = 0
Query:  206 LSWVLKDTEGPPLDFPGYLSGPEASDDET-SPTCPAASWFSDQAGWSKPGLSGYLLKRSSRDPCLWRRRWCVLGEDKFWYMKAKHRRSMRGKAAFIALMGMQVLDLECGEGESRELQRVAPLGVEVQTADRVFVFRALSREQQAEWVQAMRRGVRLATENEWLAMAELVVGEEEKARERRIEGVVERAWAACTER 399
            + +VLKD +G  LD     + P     ET S   P            K   SGYL K SSRDP LWR+RW ++  D+  Y K+   +        I+L+G     L   + E R      P   +++T  R +   A S+++   W+ A+   + L +EN  L  AE+ + E+   R  +   V   A  +  ER
Sbjct:  267 VKFVLKDVQGSHLDISENTAPPRRQPSETQSINFPVL--------LGKGVYSGYLQKASSRDPTLWRKRWFIIKGDQLLYCKSNVNQQ---DVTSISLLGAV---LAKAKPEVR-----VPFSFQLKTPRRDYELCASSKDEMVAWIHALHVQIGLCSENHRLYEAEIWITEDAVNRSEQESYVPSAAEPSLLER 442          
The following BLAST results are available for this feature:
BLAST of EWM20923.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100879|gb|EWM20923.1|0.000e+0100.00rho gtpase activating protein 2 [Nannochloropsis g... [more]
gi|299115138|emb|CBN75505.1|1.099e-1531.91conserved unknown protein [Ectocarpus siliculosus][more]
gi|813233372|ref|XP_012213476.1|1.048e-930.46hypothetical protein SPRG_18648, partial [Saproleg... [more]
gi|813164966|ref|XP_012203543.1|1.207e-931.21hypothetical protein SPRG_09033 [Saprolegnia paras... [more]
gi|669144440|ref|XP_008607782.1|1.529e-931.21hypothetical protein SDRG_03913 [Saprolegnia dicli... [more]
gi|673044345|ref|XP_008876133.1|4.533e-927.81hypothetical protein H310_11302 [Aphanomyces invad... [more]
gi|698802792|ref|XP_009834425.1|7.157e-926.82hypothetical protein, variant 2 [Aphanomyces astac... [more]
gi|1173942411|gb|OQR91422.1|8.697e-928.43hypothetical protein ACHHYP_04724 [Achlya hypogyna... [more]
gi|698802790|ref|XP_009834424.1|8.891e-926.82hypothetical protein H257_09767 [Aphanomyces astac... [more]
gi|675184879|ref|XP_008901324.1|4.388e-828.72hypothetical protein PPTG_08142 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9772rna9772Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications