rna9767, rna9767 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9767
Unique Name	rna9767
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1713
Alignment location	KK037256.1:59258..61062 -

Link to JBrowse

Properties


Property Name	Value
Product	cytochrome b-561 domain containing 1
Orig transcript id	gnl\|cribi\|Naga_100061g28.8572.mrna
Orig protein id	gnl\|cribi\|Naga_100061g28.8572
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037256.1	supercontig	KK037256.1:59258..61062 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100061g28	gene9483	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9767	rna9767-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20939.1	cds9736	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037256.1:59258..61062-
coding sequence from alignment at KK037256.1:59258..61062-

mRNA sequence

>rna9767 ID=rna9767|Name=rna9767|organism=Nannochloropsis gaditana|type=mRNA|length=1713bp
CATGTTCGCTGCTTTCTGCATTTTATATGACGGGCTCGTCCGGCGTCGAG
CTCCCTTCACAAGGCTAGGTTCATGGGCAAGTGGGCACAAGATTCTAGGT
ATCTCGATCTTGGTGCCGATGTAAGCACTCACATCGTTTTTAAAGAATAT
GAGGCTGTTGGACACACTCAAACAATTTTGTCTTCCCTTTGCTTGAAAGT
CGTCCCCCGGCTGTTCAAACCTCGCAATATCACACGCTAACTATCAATAA
CACCCAATACCATGCCAGGGATTTGATGATTGTGTCAAACATCTACAATC
GCTTAAAGAGCCTTGTTCGGGACAGTCATTGCATCCCTGAGACGCCCGAT
GGAAGTGGCGGCGGTTTACTTGTCGAGGACGACGACAATTATCGACAGAG
GCCTTTTGTGAAAACCCTTGACAACGTGACTGAATTACGTCGAAATTTTG
TTGCCCGACTTAAAATTCTCGACCCGCTGGTGGAGTCGAACCTGATTATC
CATCTTTTCGCCATCTCCCTCCTTCTATGGATCTGGGGCATCTCGCTGGC
TCGCGCCCATACGCTTACCTTGTTTTCCTTCCATCCAGTCTTCATGTCAA
TGGGATGTGTTCTATTCATGACCGAAGGCATTCTGGCCTATCGCAACCAC
GCATGCTTTCAATTTCTCTCACCAATTATGCGAAATTCTGCTCGCGTCAA
GCTGCAAAATATTCACCGTGGATTTCACATTTTAGCAGCCGTTTGCGTGG
TTATGGGCATGGCATTTATTTTTAGCAACAAAGTCAAGAAGCACCGCACA
ATTTTGCCCACGTCTATTCACGCCGCCCTTGGCTTCCTTGTTTGCGCACT
TATGGTCTTACAAATGATTGCGGGTCTTGAAAAGCTGGATGCCCAACGCT
CTGGAGTTATTGGGGGGAATGGACGAGATGGGGGAGGAGTTCTGTATCGA
TGGCATGGAAAGGCGGGTCTCATACTGTATGACGTGGCTATGGCGACAGT
GGCAACAGGACTCGTTAAGAGCCTTGGTTTCGGATTAATTACCTTTCTTA
TGGTGCTTCATGTTTGCTTGGTCTGGTTCATGGTGCATCTGCAAATGGGA
AGCAAACCTTTCAGACCGACTGAAGATGGAGGTTTAACCGATAGAGAATT
GATAGAATTACGGAGGGAGGGAGGATGTGATGGGGGTGATGAGAAAGGCG
AGAAAGGGAGAGGATCGAAAGGTAATTTTGTGCCAAGAAAAGATAGCGGG
GATTTCACGGATCCAATATAATCTGAGGAGAAATCAAATGTATGAGTATT
CGCTACGAGACGAAAAAAAAGAGACACAATCATATTTATTGCATCACGAG
GTAAATGCGTCCTGCTAGAATTAAGTCTAATCGTTAGCATAGATATTGCC
TTCTACATCTTTCAGGTACATGTTAATACTGATTTGACGATGAGGTCTGC
ATCTGCTAAGTGAAAGAAATAGGTCAATTGACTTCGTGATTATGTGATAT
CATAAGCCATTCTCTTTGTACCCATGAACGTCCTACCCTGTCGTCACATT
TTGCAGACTGCCTTTTTAATTCTTTGCTAGCTCCATTGGACAGTAATGAT
GGCTTAAGGCTCCAACATGCTATAATCTTGCACTATGGTATAAGAAAATA
CAAACAACCAATATATTCTGTTCAGAATTCTCGTTGCTTTGGATTTTAGC
AGATCACATGAAA

protein sequence of rna9767

>rna9767-protein ID=rna9767-protein|Name=rna9767|organism=Nannochloropsis gaditana|type=polypeptide|length=318bp
MMQAPQNCVHVSILAVCSLYRTLPRLTYPLFTNFTDAVTELRRNFVARLK
ILDPLVESNLIIHLFAISLLLWIWGISLARAHTLTLFSFHPVFMSMGCVL
FMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMA
FIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIG
GNGRDGGGVLYRWHGKAGLILYDVAMATVATGLVKSLGFGLITFLMVLHV
CLVWFMVHLQMGSKPFRPTEDGGLTDRELIELRREGGCDGGDEKGEKGRG
SKGNFVPRKDSGDFTDPI

mRNA from alignment at KK037256.1:59258..61062-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9767 ID=rna9767|Name=rna9767|organism=Nannochloropsis gaditana|type=mRNA|length=1805bp|location=Sequence derived from alignment at KK037256.1:59258..61062- (Nannochloropsis gaditana)
ACAGTATACGTTTTCAACAGGCATGTGAACACTGAAATTGTGGGTGTAGT
CATATTCTCAGGGAATCTTTCGATCTCGGGTAGAAAATTATTACGAGATA
CACAAGCGTGGGGACATTCGAGTCTATGATGCAAGCACCGCAAAATTGCG
TACATGTCTCCATTCTTGCTGTTTGTTCCTTGTATAGAACCTTACCCCGC
CTGACTTATCCGCTCTTCACCAATTTTACTGACGCAGTGACTGAATTACG
TCGAAATTTTGTTGCCCGACTTAAAATTCTCGACCCGCTGGTGGAGTCGA
ACCTGATTATCCATCTTTTCGCCATCTCCCTCCTTCTATGGATCTGGGGC
ATCTCGCTGGCTCGCGCCCATACGCTTACCTTGTTTTCCTTCCATCCAGT
CTTCATGTCAATGGGATGTGTTCTATTCATGACCGAAGGCATTCTGGTAA
GAGAAACCCAAGATGTTAAAATTAATAGAAATTTTCGACCACCAAGCAGG
AAATACATTTTCATGAAATTGACGGAACAATCACTCAAAAGTATGTTTGT
GTGCTCATGGCCCCTTTTGAAAATATTTTTAGGCCTATCGCAACCACGCA
TGCTTTCAATTTCTCTCACCAATTATGCGAAATTCTGCTCGCGTCAAGCT
GCAAAATATTCACCGTGGATTTCACATTTTAGCAGCCGTTTGCGTGGTTA
TGGGCATGGCATTTATTTTTAGCAACAAAGGTAAAAATATCTCTTTTTTT
AATGGTTTGTTTGACATTAGAGCGAGTATGTAACTAACTTCGATGTCTCT
GCATCTTTTCTTTCATGAAACAACTTCTCACTTCATTCATTATTTATTCA
TCTCCGGAATTTATTCGTTCACTAGTCAAGAAGCACCGCACAATTTTGCC
CACGTCTATTCACGCCGCCCTTGGCTTCCTTGTTTGCGCACTTATGGTCT
TACAAATGATTGCGGGTCTTGAAAAGCTGGATGCCCAACGCTCTGGAGTT
ATTGGGGGGAATGGACGAGATGGGGGAGGAGTTCTGTATCGATGGCATGG
AAAGGCGGGTCTCATACTGTATGACGTGGCTATGGCGACAGTGGCAACAG
GACTCGTTAAGAGCCTTGGTTTCGGATTAATTACCTTTCTTATGGTGCTT
CATGTTTGCTTGGTCTGGTTCATGGTGCATCTGCAAATGGGAAGCAAACC
TTTCAGACCGACTGAAGATGGAGGTTTAACCGATAGAGAATTGATAGAAT
TACGGAGGGAGGGAGGATGTGATGGGGGTGATGAGAAAGGCGAGAAAGGG
AGAGGATCGAAAGGTAATTTTGTGCCAAGAAAAGATAGCGGGGATTTCAC
GGATCCAATATAATCTGAGGAGAAATCAAATGTATGAGTATTCGCTACGA
GACGAAAAAAAAGAGACACAATCATATTTATTGCATCACGAGGTAAATGC
GTCCTGCTAGAATTAAGTCTAATCGTTAGCATAGATATTGCCTTCTACAT
CTTTCAGGTACATGTTAATACTGATTTGACGATGAGGTCTGCATCTGCTA
AGTGAAAGAAATAGGTCAATTGACTTCGTGATTATGTGATATCATAAGCC
ATTCTCTTTGTACCCATGAACGTCCTACCCTGTCGTCACATTTTGCAGAC
TGCCTTTTTAATTCTTTGCTAGCTCCATTGGACAGTAATGATGGCTTAAG
GCTCCAACATGCTATAATCTTGCACTATGGTATAAGAAAATACAAACAAC
CAATATATTCTGTTCAGAATTCTCGTTGCTTTGGATTTTAGCAGATCACA
TGAAA

Coding sequence (CDS) from alignment at KK037256.1:59258..61062-

>rna9767 ID=rna9767|Name=rna9767|organism=Nannochloropsis gaditana|type=CDS|length=2871bp|location=Sequence derived from alignment at KK037256.1:59258..61062- (Nannochloropsis gaditana)
TCAAGAAGCACCGCACAATTTTGCCCACGTCTATTCACGCCGCCCTTGGC
TTCCTTGTTTGCGCACTTATGGTCTTACAAATGATTGCGGGTCTTGAAAA
GCTGGATGCCCAACGCTCTGGAGTTATTGGGGGGAATGGACGAGATGGGG
GAGGAGTTCTGTATCGATGGCATGGAAAGGCGGGTCTCATACTGTATGAC
GTGGCTATGGCGACAGTGGCAACAGGACTCGTTAAGAGCCTTGGTTTCGG
ATTAATTACCTTTCTTATGGTGCTTCATGTTTGCTTGGTCTGGTTCATGG
TGCATCTGCAAATGGGAAGCAAACCTTTCAGACCGACTGAAGATGGAGGT
TTAACCGATAGAGAATTGATAGAATTACGGAGGGAGGGAGGATGTGATGG
GGGTGATGAGAAAGGCGAGAAAGGGAGAGGATCGAAAGGTAATTTTGTGC
CAAGAAAAGATAGCGGGGATTTCACGGATCCAATATAAGCCTATCGCAAC
CACGCATGCTTTCAATTTCTCTCACCAATTATGCGAAATTCTGCTCGCGT
CAAGCTGCAAAATATTCACCGTGGATTTCACATTTTAGCAGCCGTTTGCG
TGGTTATGGGCATGGCATTTATTTTTAGCAACAAAGATGATGCAAGCACC
GCAAAATTGCGTACATGTCTCCATTCTTGCTGTTTGTTCCTTGTATAGAA
CCTTACCCCGCCTGACTTATCCGCTCTTCACCAATTTTACTGACGCAGTG
ACTGAATTACGTCGAAATTTTGTTGCCCGACTTAAAATTCTCGACCCGCT
GGTGGAGTCGAACCTGATTATCCATCTTTTCGCCATCTCCCTCCTTCTAT
GGATCTGGGGCATCTCGCTGGCTCGCGCCCATACGCTTACCTTGTTTTCC
TTCCATCCAGTCTTCATGTCAATGGGATGTGTTCTATTCATGACCGAAGG
CATTCTGTCAAGAAGCACCGCACAATTTTGCCCACGTCTATTCACGCCGC
CCTTGGCTTCCTTGTTTGCGCACTTATGGTCTTACAAATGATTGCGGGTC
TTGAAAAGCTGGATGCCCAACGCTCTGGAGTTATTGGGGGGAATGGACGA
GATGGGGGAGGAGTTCTGTATCGATGGCATGGAAAGGCGGGTCTCATACT
GTATGACGTGGCTATGGCGACAGTGGCAACAGGACTCGTTAAGAGCCTTG
GTTTCGGATTAATTACCTTTCTTATGGTGCTTCATGTTTGCTTGGTCTGG
TTCATGGTGCATCTGCAAATGGGAAGCAAACCTTTCAGACCGACTGAAGA
TGGAGGTTTAACCGATAGAGAATTGATAGAATTACGGAGGGAGGGAGGAT
GTGATGGGGGTGATGAGAAAGGCGAGAAAGGGAGAGGATCGAAAGGTAAT
TTTGTGCCAAGAAAAGATAGCGGGGATTTCACGGATCCAATATAAGCCTA
TCGCAACCACGCATGCTTTCAATTTCTCTCACCAATTATGCGAAATTCTG
CTCGCGTCAAGCTGCAAAATATTCACCGTGGATTTCACATTTTAGCAGCC
GTTTGCGTGGTTATGGGCATGGCATTTATTTTTAGCAACAAAGATGATGC
AAGCACCGCAAAATTGCGTACATGTCTCCATTCTTGCTGTTTGTTCCTTG
TATAGAACCTTACCCCGCCTGACTTATCCGCTCTTCACCAATTTTACTGA
CGCAGTGACTGAATTACGTCGAAATTTTGTTGCCCGACTTAAAATTCTCG
ACCCGCTGGTGGAGTCGAACCTGATTATCCATCTTTTCGCCATCTCCCTC
CTTCTATGGATCTGGGGCATCTCGCTGGCTCGCGCCCATACGCTTACCTT
GTTTTCCTTCCATCCAGTCTTCATGTCAATGGGATGTGTTCTATTCATGA
CCGAAGGCATTCTGTCAAGAAGCACCGCACAATTTTGCCCACGTCTATTC
ACGCCGCCCTTGGCTTCCTTGTTTGCGCACTTATGGTCTTACAAATGATT
GCGGGTCTTGAAAAGCTGGATGCCCAACGCTCTGGAGTTATTGGGGGGAA
TGGACGAGATGGGGGAGGAGTTCTGTATCGATGGCATGGAAAGGCGGGTC
TCATACTGTATGACGTGGCTATGGCGACAGTGGCAACAGGACTCGTTAAG
AGCCTTGGTTTCGGATTAATTACCTTTCTTATGGTGCTTCATGTTTGCTT
GGTCTGGTTCATGGTGCATCTGCAAATGGGAAGCAAACCTTTCAGACCGA
CTGAAGATGGAGGTTTAACCGATAGAGAATTGATAGAATTACGGAGGGAG
GGAGGATGTGATGGGGGTGATGAGAAAGGCGAGAAAGGGAGAGGATCGAA
AGGTAATTTTGTGCCAAGAAAAGATAGCGGGGATTTCACGGATCCAATAT
AAGCCTATCGCAACCACGCATGCTTTCAATTTCTCTCACCAATTATGCGA
AATTCTGCTCGCGTCAAGCTGCAAAATATTCACCGTGGATTTCACATTTT
AGCAGCCGTTTGCGTGGTTATGGGCATGGCATTTATTTTTAGCAACAAAG
ATGATGCAAGCACCGCAAAATTGCGTACATGTCTCCATTCTTGCTGTTTG
TTCCTTGTATAGAACCTTACCCCGCCTGACTTATCCGCTCTTCACCAATT
TTACTGACGCAGTGACTGAATTACGTCGAAATTTTGTTGCCCGACTTAAA
ATTCTCGACCCGCTGGTGGAGTCGAACCTGATTATCCATCTTTTCGCCAT
CTCCCTCCTTCTATGGATCTGGGGCATCTCGCTGGCTCGCGCCCATACGC
TTACCTTGTTTTCCTTCCATCCAGTCTTCATGTCAATGGGATGTGTTCTA
TTCATGACCGAAGGCATTCTG

Synonyms

Publications