EWM20939.1, cds9736 (CDS) Nannochloropsis gaditana

Overview
NameEWM20939.1
Unique Namecds9736
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:60617..60937 -
Alignment locationKK037256.1:60333..60480 -
Alignment locationKK037256.1:59700..60187 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20939.1
Productcytochrome b-561 domain containing 1
Orig transcript idgnl|cribi|Naga_100061g28.8572.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:60617..60937 -
KK037256.1supercontigKK037256.1:60333..60480 -
KK037256.1supercontigKK037256.1:59700..60187 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR004877Cyt_b561_dom
IPR006593Cyt_b561/ferric_Rdtase_TM
Homology
BLAST of EWM20939.1 vs. NCBI_GenBank
Match: gi|585100895|gb|EWM20939.1| (cytochrome b-561 domain containing 1 [Nannochloropsis gaditana])

HSP 1 Score: 652.514 bits (1682), Expect = 0.000e+0
Identity = 318/318 (100.00%), Postives = 318/318 (100.00%), Query Frame = 0
Query:    1 MMQAPQNCVHVSILAVCSLYRTLPRLTYPLFTNFTDAVTELRRNFVARLKILDPLVESNLIIHLFAISLLLWIWGISLARAHTLTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGVLYRWHGKAGLILYDVAMATVATGLVKSLGFGLITFLMVLHVCLVWFMVHLQMGSKPFRPTEDGGLTDRELIELRREGGCDGGDEKGEKGRGSKGNFVPRKDSGDFTDPI 318
            MMQAPQNCVHVSILAVCSLYRTLPRLTYPLFTNFTDAVTELRRNFVARLKILDPLVESNLIIHLFAISLLLWIWGISLARAHTLTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGVLYRWHGKAGLILYDVAMATVATGLVKSLGFGLITFLMVLHVCLVWFMVHLQMGSKPFRPTEDGGLTDRELIELRREGGCDGGDEKGEKGRGSKGNFVPRKDSGDFTDPI
Sbjct:    1 MMQAPQNCVHVSILAVCSLYRTLPRLTYPLFTNFTDAVTELRRNFVARLKILDPLVESNLIIHLFAISLLLWIWGISLARAHTLTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGVLYRWHGKAGLILYDVAMATVATGLVKSLGFGLITFLMVLHVCLVWFMVHLQMGSKPFRPTEDGGLTDRELIELRREGGCDGGDEKGEKGRGSKGNFVPRKDSGDFTDPI 318          
BLAST of EWM20939.1 vs. NCBI_GenBank
Match: gi|585100894|gb|EWM20938.1| (cytochrome b-561 domain containing 1 [Nannochloropsis gaditana])

HSP 1 Score: 576.63 bits (1485), Expect = 0.000e+0
Identity = 286/299 (95.65%), Postives = 286/299 (95.65%), Query Frame = 0
Query:   20 YRTLPRLTYPLFTNFTDAVTELRRNFVARLKILDPLVESNLIIHLFAISLLLWIWGISLARAHTLTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGVLYRWHGKAGLILYDVAMATVATGLVKSLGFGLITFLMVLHVCLVWFMVHLQMGSKPFRPTEDGGLTDRELIELRREGGCDGGDEKGEKGRGSKGNFVPRKDSGDFTDPI 318
            YR  P      F    D VTELRRNFVARLKILDPLVESNLIIHLFAISLLLWIWGISLARAHTLTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGVLYRWHGKAGLILYDVAMATVATGLVKSLGFGLITFLMVLHVCLVWFMVHLQMGSKPFRPTEDGGLTDRELIELRREGGCDGGDEKGEKGRGSKGNFVPRKDSGDFTDPI
Sbjct:   39 YRQRP------FVKTLDNVTELRRNFVARLKILDPLVESNLIIHLFAISLLLWIWGISLARAHTLTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGVLYRWHGKAGLILYDVAMATVATGLVKSLGFGLITFLMVLHVCLVWFMVHLQMGSKPFRPTEDGGLTDRELIELRREGGCDGGDEKGEKGRGSKGNFVPRKDSGDFTDPI 331          
BLAST of EWM20939.1 vs. NCBI_GenBank
Match: gi|299117222|emb|CBN75184.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 137.502 bits (345), Expect = 5.429e-35
Identity = 87/269 (32.34%), Postives = 131/269 (48.70%), Query Frame = 0
Query:   36 DAVTELRRNFVARLKILDPLVESNLIIHLFAISLLLWIWGISLARAHTLTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGVLYRWHGKAGLILYDVAMATVATGLVKSLGFGLITFLMVLHVCLVWFMVHLQMGSKPF-------RPTEDGG---LTDRELIELRREGGCDGGDEK 294
            D +T  R   VA  K     V+   + H+    + L +   + ++  +L LFS H   M++  V+ M EG++AYRNH     LSPIM N  + K + IH    +LA++   +G+ FI  NKV    +ILP + H  +G +    MV+Q++ G  K  +  SGVI    R   G  YRWHGK GL+LYD++  +V  GL    G  ++  ++ L +   W  V+LQM              T+D     LT  E  +L  EG  +   E+
Sbjct:   13 DKITTARARVVAASKS-PAWVKPRFLTHIMGPVIALIVIASTFSKTESLNLFSLHATCMALAFVVLMPEGVVAYRNHLLLDSLSPIMSNGTKAKKRTIHLTLQVLASMFAALGLFFIAGNKVYHRNSILPRTWHGVVGAITLLAMVMQVVVGRLKHMSFTSGVIDARNR---GKKYRWHGKMGLLLYDLSTVSVVLGLWTFFGLSVVAVVVPLMLAYAWLNVNLQMHETKHITVPVYSEGTDDPAGEKLTAPETKQLEEEGVPESKGER 277          
BLAST of EWM20939.1 vs. NCBI_GenBank
Match: gi|302834563|ref|XP_002948844.1| (hypothetical protein VOLCADRAFT_116942 [Volvox carteri f. nagariensis] >gi|300266035|gb|EFJ50224.1| hypothetical protein VOLCADRAFT_116942 [Volvox carteri f. nagariensis])

HSP 1 Score: 63.1586 bits (152), Expect = 1.141e-7
Identity = 55/163 (33.74%), Postives = 82/163 (50.31%), Query Frame = 0
Query:   83 TLTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPT------SIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGVLYRWHGKAGLILYDVAMATVATGLVKSLGF 239
            T  LF++HPV M++G V+FM E +L+Y+        +PI+    R   + IH G H+ A VCV +G    F   ++ HR  LP       S H+ LG    AL+ LQ++ GL      R G+   + R   G L+R+    G   +  A+  VATGL + + F
Sbjct:   67 TSKLFNWHPVLMTLGFVVFMAEALLSYQ--------APIIPGLPREVRKRIHLGCHLAATVCVFLG----FVAVLQSHRLKLPDPMPDWYSPHSFLGLTAIALVGLQVLVGLYSYVWPRLGL---SHRMALGPLHRF---WGAAAWLAALGAVATGLQEKVTF 211          
BLAST of EWM20939.1 vs. NCBI_GenBank
Match: gi|813158013|ref|XP_012202355.1| (hypothetical protein SPRG_07687 [Saprolegnia parasitica CBS 223.65] >gi|641532967|gb|KDO26974.1| hypothetical protein SPRG_07687 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 62.003 bits (149), Expect = 1.712e-7
Identity = 43/150 (28.67%), Postives = 71/150 (47.33%), Query Frame = 0
Query:   84 LTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGVLYRWHGKAGLILYDVAMATVATGL 233
            + L   H + M++G V F +E +L YR        SP    + R++ +NIH+  H       ++G+A I  ++    + + P + H  +GF+  ALM+LQM  G  KL       +   GR     ++ WHG  G + Y   +A+   GL
Sbjct:   91 VNLLFVHILMMTLGWVAFSSEAMLVYRPFDGLNARSP----NKRIQ-RNIHKFMHYAVLATTLLGLAGILISRGMAGKRLFPHNKHGWMGFITVALMLLQMEVGRRKLK-----FLQFQGR----TIFEWHGMVGKLTYASGIASTILGL 226          
BLAST of EWM20939.1 vs. NCBI_GenBank
Match: gi|669169219|ref|XP_008619958.1| (hypothetical protein SDRG_15560 [Saprolegnia diclina VS20] >gi|530728378|gb|EQC26620.1| hypothetical protein SDRG_15560 [Saprolegnia diclina VS20])

HSP 1 Score: 61.6178 bits (148), Expect = 2.335e-7
Identity = 43/151 (28.48%), Postives = 71/151 (47.02%), Query Frame = 0
Query:   84 LTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGVLYRWHGKAGLILYDVAMATVATGLV 234
            + L   H + M++G V F +E +L YR        SP    + R++ +NIH+  H       ++G+A I  ++    + + P + H  +GF+  ALM+LQM  G  KL       +   GR     ++ WHG  G + Y   +A+   GL 
Sbjct:   91 VNLLFVHILMMTLGWVAFSSEAMLVYRPFDGLNARSP----NKRIQ-RNIHKFMHYAVLATTLLGLAGILISRGMAGKRLFPHNKHGWMGFITVALMLLQMEVGRRKLK-----FLQFQGR----TIFEWHGFVGKLTYASGIASTILGLT 227          
BLAST of EWM20939.1 vs. NCBI_GenBank
Match: gi|669169223|ref|XP_008619960.1| (hypothetical protein SDRG_15562 [Saprolegnia diclina VS20] >gi|530728380|gb|EQC26622.1| hypothetical protein SDRG_15562 [Saprolegnia diclina VS20])

HSP 1 Score: 61.6178 bits (148), Expect = 2.664e-7
Identity = 43/151 (28.48%), Postives = 71/151 (47.02%), Query Frame = 0
Query:   84 LTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGVLYRWHGKAGLILYDVAMATVATGLV 234
            + L   H + M++G V F +E +L YR        SP    + R++ +NIH+  H       ++G+A I  ++    + + P + H  +GF+  ALM+LQM  G  KL       +   GR     ++ WHG  G + Y   +A+   GL 
Sbjct:   91 VNLLFVHILMMTLGWVAFSSEAMLVYRPFDGLNARSP----NKRIQ-RNIHKFMHYAVLATTLLGLAGILISRGMAGKRLFPHNKHGWMGFITVALMLLQMEVGRRKLK-----FLQFQGR----TIFEWHGFVGKLTYASGIASTILGLT 227          
BLAST of EWM20939.1 vs. NCBI_GenBank
Match: gi|1173927838|gb|OQR81641.1| (hypothetical protein THRCLA_23332 [Thraustotheca clavata])

HSP 1 Score: 60.8474 bits (146), Expect = 4.834e-7
Identity = 41/150 (27.33%), Postives = 69/150 (46.00%), Query Frame = 0
Query:   84 LTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGVLYRWHGKAGLILYDVAMATVATGL 233
            L L+  H + M++  V F +E +L YR        SP    + R++ +NIH+        C ++G+A I  ++    + + P + H  +GF+   LM+LQM  G  KL          + +  G  +Y WH   G + Y   +A+   GL
Sbjct:   81 LNLYFVHILLMTVAWVAFSSEALLVYRPFDGLNTRSP----NRRIQ-RNIHKIMLYSVGACTLLGLAAILFSRAMAGKRLFPHNWHGWMGFITIGLMLLQMEIGRRKLK---------HLQFQGRTIYEWHAVVGKLTYASGIASTLFGL 216          
BLAST of EWM20939.1 vs. NCBI_GenBank
Match: gi|1108934812|ref|XP_010736985.2| (PREDICTED: cytochrome b561 domain-containing protein 2 [Larimichthys crocea] >gi|808878387|gb|KKF26639.1| Cytochrome b561 domain-containing protein 2 [Larimichthys crocea])

HSP 1 Score: 60.077 bits (144), Expect = 5.330e-7
Identity = 49/142 (34.51%), Postives = 67/142 (47.18%), Query Frame = 0
Query:   85 TLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILP--TSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGV--LYRWHGKAGLILY 222
            +LFS+HP  M++   LFMTE IL +  H      SPI R   + K   +H     L   C V+G+A IF N   KH    P  TS H  LG L   ++VLQ +A +         +I  +   G  +  L R+H   GL+ Y
Sbjct:   45 SLFSWHPFLMTLAFSLFMTEAILLFSPHG-----SPIKRFPHKTK-GRVHWILQCLCVSCAVLGLAAIFYN---KHLNGKPHFTSWHGLLGLLTVCVVVLQSLAAVP--------LIYHSLAKGWSLAKLKRYHAATGLVTY 169          
BLAST of EWM20939.1 vs. NCBI_GenBank
Match: gi|913822621|emb|CRK38716.1| (hypothetical protein BN1723_004441 [Verticillium longisporum])

HSP 1 Score: 60.4622 bits (145), Expect = 7.956e-7
Identity = 57/208 (27.40%), Postives = 95/208 (45.67%), Query Frame = 0
Query:   24 PRLTYPLFTNFTDAVTELRRNFVARLKIL-DPLVE-SNLIIHLFAISLLLWIWGISLARAHTLTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGVLYRWHGKAGLILYDVAMATV 229
            P  T PL   F       RR+     KI  +P+++   +   +  ++L+  IW   LA  H + LF+ HP+  S+  +L +T+ +L          L P    + + + Q +H   ++ A + +V G+  I  NK + H      S+H  LG LV AL+ LQ + G          + GG  R     ++++H  AG +LY   +ATV
Sbjct:   44 PSATTPLLGGF-------RRSQPTTAKIWKNPIIDWPGITAQILILALVAIIWSYILA--HPVILFTGHPLAQSL-AILILTQSVLV---------LQPTHDAAQKRQGQRVHAVLNLAAFLLLVAGVTIIEVNKFRSHGPHF-HSLHGYLGVLVAALIALQYLVGFTMWAV--PSLYGGEDR--AKAVWKYHRAAGYVLYVALLATV 227          
The following BLAST results are available for this feature:
BLAST of EWM20939.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100895|gb|EWM20939.1|0.000e+0100.00cytochrome b-561 domain containing 1 [Nannochlorop... [more]
gi|585100894|gb|EWM20938.1|0.000e+095.65cytochrome b-561 domain containing 1 [Nannochlorop... [more]
gi|299117222|emb|CBN75184.1|5.429e-3532.34expressed unknown protein [Ectocarpus siliculosus][more]
gi|302834563|ref|XP_002948844.1|1.141e-733.74hypothetical protein VOLCADRAFT_116942 [Volvox car... [more]
gi|813158013|ref|XP_012202355.1|1.712e-728.67hypothetical protein SPRG_07687 [Saprolegnia paras... [more]
gi|669169219|ref|XP_008619958.1|2.335e-728.48hypothetical protein SDRG_15560 [Saprolegnia dicli... [more]
gi|669169223|ref|XP_008619960.1|2.664e-728.48hypothetical protein SDRG_15562 [Saprolegnia dicli... [more]
gi|1173927838|gb|OQR81641.1|4.834e-727.33hypothetical protein THRCLA_23332 [Thraustotheca c... [more]
gi|1108934812|ref|XP_010736985.2|5.330e-734.51PREDICTED: cytochrome b561 domain-containing prote... [more]
gi|913822621|emb|CRK38716.1|7.956e-727.40hypothetical protein BN1723_004441 [Verticillium l... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9767rna9767Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications