rna9760, rna9760 (mRNA) Nannochloropsis gaditana

Overview
Namerna9760
Unique Namerna9760
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length336
Alignment locationKK037256.1:48690..49839 +

Link to JBrowse

Properties
Property NameValue
Productplant like protein
Orig transcript idgnl|cribi|Naga_100061g31.8545.mrna
Orig protein idgnl|cribi|Naga_100061g31.8545
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:48690..49839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100061g31gene9480Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9760rna9760-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20912.1cds9729Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9760 ID=rna9760|Name=rna9760|organism=Nannochloropsis gaditana|type=mRNA|length=336bp
ATGCTTAACTACAAGACGTGGCAGAGCCGGTGGACCGGGAGGTTTTTGGC
CTCTCAAGCACAAAAATCTAAGCACAAAAATCGGAGCTGCTCTTGGCCGT
TCTGGGTGCTCTCCGGCCGCGCCCCGCCGTCACCTGATGGCCCCTTGATG
AGAGACTGTCCATGTGCAGCAGCCCATGCGACGGGAGAAAGGCGACGATA
CACACAAGTCGGGTTCGAAAGTCAAGCACGATTAAGAATCTACAGCGCCA
AAGATGAAGAAACAATAAGACATGACACACAACGCCTGTTTTCGTTAAAC
TTTGAATTGTGCGTCGAGCTTTTCCCTCGCGTCTAA
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protein sequence of rna9760

>rna9760-protein ID=rna9760-protein|Name=rna9760|organism=Nannochloropsis gaditana|type=polypeptide|length=295bp
MDHWIAWVCHHTDRVGGVHTCGMWPRRCRPVSCYIPPHRLPTSLTSDLSN
RNSRTGGFPPLRAPPMRAFYLLALSSLLAANVAMAVSRPSTDMSSSCFVP
TSLPRAMSSLQRRRPYTPSPATSSRSSCCMRLNANQSPESPSLFERAFSA
TPYLLPVLDSINYSRFLAFYAPDLFNPIYAALDPLLAVYKASPFINLAIY
LLIVWVGRQPALSRYVRFNFQQAIILDVALVIPSILTSILREQAAPVWVQ
EPVANTLFFILSASLAYVAVKLTLGQKPNEIPLISEAAEMTAGPF
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mRNA from alignment at KK037256.1:48690..49839+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9760 ID=rna9760|Name=rna9760|organism=Nannochloropsis gaditana|type=mRNA|length=1150bp|location=Sequence derived from alignment at KK037256.1:48690..49839+ (Nannochloropsis gaditana)
ATGGACCACTGGATAGCGTGGGTGTGTCATCACACTGATCGTGTCGGAGG
TGTTCACACGTGCGGGATGTGGCCTCGGCGTTGCCGGCCTGTCTCTTGCT
ACATTCCGCCTCATCGCCTCCCTACGTCTCTCACGTCTGACCTCTCCAAC
CGCAACAGCCGCACAGGAggattccctccccttcgtgcTCCACCCATGAG
GGCATTTTATCTCCTTGCattgtcttccctccttgctgccaACGTGGCAA
TGGccgtctcccgcccctcgacCGACATGTCAAGCTCCTGCTTTGTCCca
acctccctgccccgTGCCATGTCCTCTCTGCAGAGAAGAAGGCCGTacac
cccttcccccgccacctcctcgcgaTCGTCCTGCTGCATGCGACTCAATG
CCAATCAAAGTCCAGAGAGCCCGTCTCTTTTCGAACGGGCCTTCAGCGCC
actccctacctcctccccgtgctcgaCTCCATAAACTATTCTCGTTTCCT
TGCCTTCTACGCCCCTGATTTGTTCAACCCCATCTATGCAGCCCTAGATC
CGCTGCTTGCCGTATACAAGGCTTCCCCCTTCATCAACCTCGCCATCTAC
CTCCTGATCGTGTGGGTGGGCAGGCAGCCGGCCTTGAGCCGGTACGTGCG
CTTCAACTTCCAGCAGGCCATCATTCTCGACGTGGCGCTcgtcatcccct
ccatcctcacctccatcctccgagAGCAGGCGGCGCCCGTGTGGGTGCAG
GAGCCCGTGGCCAacaccctcttcttcatcctctccgcctccctcgccta
cGTGGCAGTCAAACTCACGCTGGGTCAGAAGCCCAACGAGATCCCCCTCA
TCAGTGAGGCGGCCGAGATGACGGCGGGGCCCTTCTAGGGGAGACGACCC
TGGCAGTTGCTCACCAATTCTCCTCGCCCCAGGGGTCTAGGACTTGAAGG
AAGCTCCCGGGAGCTGACAAGGCTGccggaggaggttgaggaagaaaaaa
gcaacGAGGACGTCGAATCGTTGAACCgatgctctctttccttttggCTT
ACGCATTCCCAGTGACGCGCCATCTCATGTATACATTGGCTGGTGCGCCC
GCGCCATGCGTctcggccctctcccccctcacgCCTCTCCACTGCCACAC
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Coding sequence (CDS) from alignment at KK037256.1:48690..49839+

>rna9760 ID=rna9760|Name=rna9760|organism=Nannochloropsis gaditana|type=CDS|length=888bp|location=Sequence derived from alignment at KK037256.1:48690..49839+ (Nannochloropsis gaditana)
ATGGACCACTGGATAGCGTGGGTGTGTCATCACACTGATCGTGTCGGAGG
TGTTCACACGTGCGGGATGTGGCCTCGGCGTTGCCGGCCTGTCTCTTGCT
ACATTCCGCCTCATCGCCTCCCTACGTCTCTCACGTCTGACCTCTCCAAC
CGCAACAGCCGCACAGGAggattccctccccttcgtgcTCCACCCATGAG
GGCATTTTATCTCCTTGCattgtcttccctccttgctgccaACGTGGCAA
TGGccgtctcccgcccctcgacCGACATGTCAAGCTCCTGCTTTGTCCca
acctccctgccccgTGCCATGTCCTCTCTGCAGAGAAGAAGGCCGTacac
cccttcccccgccacctcctcgcgaTCGTCCTGCTGCATGCGACTCAATG
CCAATCAAAGTCCAGAGAGCCCGTCTCTTTTCGAACGGGCCTTCAGCGCC
actccctacctcctccccgtgctcgaCTCCATAAACTATTCTCGTTTCCT
TGCCTTCTACGCCCCTGATTTGTTCAACCCCATCTATGCAGCCCTAGATC
CGCTGCTTGCCGTATACAAGGCTTCCCCCTTCATCAACCTCGCCATCTAC
CTCCTGATCGTGTGGGTGGGCAGGCAGCCGGCCTTGAGCCGGTACGTGCG
CTTCAACTTCCAGCAGGCCATCATTCTCGACGTGGCGCTcgtcatcccct
ccatcctcacctccatcctccgagAGCAGGCGGCGCCCGTGTGGGTGCAG
GAGCCCGTGGCCAacaccctcttcttcatcctctccgcctccctcgccta
cGTGGCAGTCAAACTCACGCTGGGTCAGAAGCCCAACGAGATCCCCCTCA
TCAGTGAGGCGGCCGAGATGACGGCGGGGCCCTTCTAG
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Synonyms
Publications