EWM20912.1, cds9729 (CDS) Nannochloropsis gaditana

Overview
NameEWM20912.1
Unique Namecds9729
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:48690..49577 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20912.1
Productplant like protein
Orig transcript idgnl|cribi|Naga_100061g31.8545.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:48690..49577 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM20912.1 vs. NCBI_GenBank
Match: gi|585100868|gb|EWM20912.1| (plant like protein [Nannochloropsis gaditana])

HSP 1 Score: 595.119 bits (1533), Expect = 0.000e+0
Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0
Query:    1 MDHWIAWVCHHTDRVGGVHTCGMWPRRCRPVSCYIPPHRLPTSLTSDLSNRNSRTGGFPPLRAPPMRAFYLLALSSLLAANVAMAVSRPSTDMSSSCFVPTSLPRAMSSLQRRRPYTPSPATSSRSSCCMRLNANQSPESPSLFERAFSATPYLLPVLDSINYSRFLAFYAPDLFNPIYAALDPLLAVYKASPFINLAIYLLIVWVGRQPALSRYVRFNFQQAIILDVALVIPSILTSILREQAAPVWVQEPVANTLFFILSASLAYVAVKLTLGQKPNEIPLISEAAEMTAGPF 295
            MDHWIAWVCHHTDRVGGVHTCGMWPRRCRPVSCYIPPHRLPTSLTSDLSNRNSRTGGFPPLRAPPMRAFYLLALSSLLAANVAMAVSRPSTDMSSSCFVPTSLPRAMSSLQRRRPYTPSPATSSRSSCCMRLNANQSPESPSLFERAFSATPYLLPVLDSINYSRFLAFYAPDLFNPIYAALDPLLAVYKASPFINLAIYLLIVWVGRQPALSRYVRFNFQQAIILDVALVIPSILTSILREQAAPVWVQEPVANTLFFILSASLAYVAVKLTLGQKPNEIPLISEAAEMTAGPF
Sbjct:    1 MDHWIAWVCHHTDRVGGVHTCGMWPRRCRPVSCYIPPHRLPTSLTSDLSNRNSRTGGFPPLRAPPMRAFYLLALSSLLAANVAMAVSRPSTDMSSSCFVPTSLPRAMSSLQRRRPYTPSPATSSRSSCCMRLNANQSPESPSLFERAFSATPYLLPVLDSINYSRFLAFYAPDLFNPIYAALDPLLAVYKASPFINLAIYLLIVWVGRQPALSRYVRFNFQQAIILDVALVIPSILTSILREQAAPVWVQEPVANTLFFILSASLAYVAVKLTLGQKPNEIPLISEAAEMTAGPF 295          
BLAST of EWM20912.1 vs. NCBI_GenBank
Match: gi|553189027|ref|XP_005854917.1| (hypothetical protein NGA_0603620 [Nannochloropsis gaditana CCMP526] >gi|422294146|gb|EKU21446.1| hypothetical protein NGA_0603620 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 415.231 bits (1066), Expect = 3.613e-145
Identity = 210/212 (99.06%), Postives = 211/212 (99.53%), Query Frame = 0
Query:   84 MAVSRPSTDMSSSCFVPTSLPRAMSSLQRRRPYTPSPATSSRSSCCMRLNANQSPESPSLFERAFSATPYLLPVLDSINYSRFLAFYAPDLFNPIYAALDPLLAVYKASPFINLAIYLLIVWVGRQPALSRYVRFNFQQAIILDVALVIPSILTSILREQAAPVWVQEPVANTLFFILSASLAYVAVKLTLGQKPNEIPLISEAAEMTAGPF 295
            MAVSRP TDMSSSCFVPTSLPRAMSSLQRRRPYTPSPATSSRSSCCMRLNANQSPESPSLFERAFSATPYLLPVLDSINYSRFLAFYAPDLFNPIYAALDPLLAVYKASPF+NLAIYLLIVWVGRQPALSRYVRFNFQQAIILDVALVIPSILTSILREQAAPVWVQEPVANTLFFILSASLAYVAVKLTLGQKPNEIPLISEAAEMTAGPF
Sbjct:    1 MAVSRPVTDMSSSCFVPTSLPRAMSSLQRRRPYTPSPATSSRSSCCMRLNANQSPESPSLFERAFSATPYLLPVLDSINYSRFLAFYAPDLFNPIYAALDPLLAVYKASPFVNLAIYLLIVWVGRQPALSRYVRFNFQQAIILDVALVIPSILTSILREQAAPVWVQEPVANTLFFILSASLAYVAVKLTLGQKPNEIPLISEAAEMTAGPF 212          
BLAST of EWM20912.1 vs. NCBI_GenBank
Match: gi|1189380158|gb|OSX68593.1| (hypothetical protein BU14_2526s0001, partial [Porphyra umbilicalis])

HSP 1 Score: 97.0561 bits (240), Expect = 3.004e-21
Identity = 55/148 (37.16%), Postives = 88/148 (59.46%), Query Frame = 0
Query:  149 SATPYLLPVLDSINYSRFLAFYAPDLFNPIYAALDPLLAVYKASPFINLAIYL-LIVWVGRQPALSRYVRFNFQQAIILDVALVIPSILTSILREQAAPVWVQEPVANTLFFILSASLAYVAVKLTLGQKPNEIPLISEAAEMTAGPF 295
            ++ PYLLP+LD + + RF+   AP L   +  A+ PL  +Y+ +PF    I+  L V + R    SR+VRFN QQA+++DV L++P +L   +     P W+ E  ++T+F+ + AS+ Y  V    G+ P++IP +SEA E   GP+
Sbjct:    2 ASAPYLLPLLDGLVFGRFVFERAPALAALVVPAVAPLFRLYRGTPFFAFGIFFALYVLIVRNTGFSRFVRFNTQQALLIDVVLILPQLLGGAVAAAGVPGWILEAGSSTIFYAVVASVVYAVVSNLRGETPDQIPGVSEAVEAQIGPY 149          
BLAST of EWM20912.1 vs. NCBI_GenBank
Match: gi|298713221|emb|CBJ33519.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 91.6633 bits (226), Expect = 5.700e-19
Identity = 53/165 (32.12%), Postives = 90/165 (54.55%), Query Frame = 0
Query:  130 MRLNANQSPESPSLFERAFSATPYLLPVLDSINYSRFLAFYAPDLFNPIYAALDPLLAVYKASPFINLAIYLLIVWVGRQPALSRYVRFNFQQAIILDVALVIPSILTSILREQAAPVWVQEPVANTLFFILSASLAYVAVKLTLGQKPNEIPLISEAAEMTAGP 294
            M+ +     +  S+  RA     YLLP+LD ++  R +    P L + ++  L P LA++   PF+ L +++++    R+   SR++RFN QQAI++D+  V+  +L +      AP   ++ V N  F+ L  ++AY   +   G+  N+IPLIS AAE+  GP
Sbjct:    1 MKASGQGGGKGESVRNRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTA-AGYVAPEG-EQFVTNFAFYCLVGAVAYAVAETARGKMANQIPLISAAAEIQLGP 163          
BLAST of EWM20912.1 vs. NCBI_GenBank
Match: gi|219117465|ref|XP_002179527.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409418|gb|EEC49350.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 94.7449 bits (234), Expect = 1.675e-18
Identity = 51/152 (33.55%), Postives = 83/152 (54.61%), Query Frame = 0
Query:  140 SPSLFERAFSATPYLLPVLDSINYSRFLAFYAPDLFNPIYAALDPLLAVYKASPFINLAIYLLIVWVGRQPALSRYVRFNFQQAIILDVALVIPSILTSILREQAA----PVWVQEPVANTLFFILSASLAYVAVKLTLGQKPNEIPLISEA 287
            +P+  ++  S  PYL P+LD + ++RFL    PD  NPI   +    A+Y++ PF     +  + ++   P ++R +R+N QQAI LD+AL  P ++ ++          P  V E  ++ +F  L A+L Y  V   LG  P++IP+ISEA
Sbjct:  200 APTTQDKLISVLPYLFPLLDGLQFARFLVLENPD--NPISGIIALSYALYRSIPFGGFIAFFALSFLSGNPTINRLIRYNMQQAIFLDIALFFPGLIAAVFSLVGGGKFLPQGVTEIGSDVMFVTLLATLGYCTVSSLLGGTPDKIPIISEA 349          
BLAST of EWM20912.1 vs. NCBI_GenBank
Match: gi|545707841|ref|XP_005706234.1| (hypothetical protein Gasu_29350 [Galdieria sulphuraria] >gi|452822697|gb|EME29714.1| hypothetical protein Gasu_29350 [Galdieria sulphuraria])

HSP 1 Score: 90.1225 bits (222), Expect = 8.064e-18
Identity = 54/163 (33.13%), Postives = 87/163 (53.37%), Query Frame = 0
Query:  135 NQSPESPSLFERAFSATPYLLPVLDSINYSRFLAFYAPDLFNPIYAALDPLLAVYKASPFINLAIY-LLIVWVGRQPALSRYVRFNFQQAIILDVALVIPSI-LTSILREQAAPVWVQEPVANTLFFILSASLAYVAVKLTLGQKPNEIPLISEAAEMTAGPF 295
            N  P  PS   R  +  PYL+P+LD + Y RF+    P +   I+  L PLL VY+  PF+   ++ +L  ++ R   +  ++RFN  QAI++D+ L+IP + L +     A P  V E + + +F  +     YV + +  G KP+++PLISEA+      F
Sbjct:   72 NLIPLKPSPKNRLLAFLPYLMPLLDGVVYGRFVFAKYPVISAFIFYPLQPLLIVYRGIPFLAFVLFAMLFYFIVRNETVDNFIRFNTMQAILIDLVLIIPQMFLHATSASGAIPPGVVESLCSLVFCAIVVITMYVIICVARGNKPDQVPLISEASRAQLNRF 234          
BLAST of EWM20912.1 vs. NCBI_GenBank
Match: gi|1201310363|gb|OVA10826.1| (hypothetical protein BVC80_8199g11 [Macleaya cordata])

HSP 1 Score: 88.1965 bits (217), Expect = 3.336e-17
Identity = 74/224 (33.04%), Postives = 111/224 (49.55%), Query Frame = 0
Query:   72 LALSSLLAANVAMAVSRPSTDMSSS-CFVPTSLPRAMSSLQRRRPYTPSPATSSRSSCCMRLNANQSPESPSLFERAFSATPYLLPVLDSINYSRFLAFYAPDLFNPIYAALDPLL---AVYKASPFINLAIYLLIVW-VGRQPALSRYVRFNFQQAIILDVALVIPSILT-SILREQAAPVWVQEPVANTLFFILSASLAYVAVKLTLGQKPNEIPLISEAAE 289
            +A+++LLA +V        T +SSS C    S   +  SL +     P  A   + S  ++ N N S + P   +R  +A  Y  P  D I Y +    Y  + F PI   L PL+    V+K+ PF    ++L + + V R P  SRYVRFN  QAI+LDV L+ P +L  S    +   + +   + +T+F  L  SL Y +    LGQ P  +P+++EAAE
Sbjct:    1 MAMAALLAFSVTPQTFSHKTHLSSSLCSFKHS---SFLSLTK-----PRIAIKPKRSISVQSNGNNSADPP---DRLIAAICYFYPFFDGIQYGK----YVINQFTPIQVLLQPLIPAIRVFKSFPFNGFLVFLTLYFIVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFHPSEGVGLDLMMSLDSTVFLFLLVSLIYGSSSCLLGQVP-RLPIVAEAAE 208          
BLAST of EWM20912.1 vs. NCBI_GenBank
Match: gi|544217176|ref|XP_005538732.1| (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >gi|449019294|dbj|BAM82696.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 89.7373 bits (221), Expect = 5.738e-17
Identity = 53/153 (34.64%), Postives = 85/153 (55.56%), Query Frame = 0
Query:  145 ERAFSATPYLLPVLDSINYSRFLAFYAPDLFNPIYAALDPLLAVYKASPFINLAIY-LLIVWVGRQPALSRYVRFNFQQAIILDVALVIPSILTSILREQAAPVWVQEPVANTLFFILSASLAYVAVKLTLGQKPNEIPLISEAA--EMTAGP 294
            ER     PYL+P+LDS+ Y +++    P     +   L PLL++Y+  PF+ L I+ L++V V R P +S +VRFN  QA+ LD+AL++P +   +           + +  ++F+ +   + YV      GQ P+ IPLISEAA  +  +GP
Sbjct:  181 ERLLGILPYLVPLLDSLVYGKYVFERFPIFSMFVLQPLWPLLSIYRGIPFLPLIIFVLMLVLVVRNPRVSYFVRFNTMQALTLDIALILPQLFQGLSNALPVSAVAIQVLQASVFYGMLGCILYVIQSCGRGQVPDRIPLISEAAHTQTMSGP 333          
BLAST of EWM20912.1 vs. NCBI_GenBank
Match: gi|1210530764|dbj|GAX10715.1| (hypothetical protein FisN_14Lh231 [Fistulifera solaris])

HSP 1 Score: 88.9669 bits (219), Expect = 1.501e-16
Identity = 53/155 (34.19%), Postives = 82/155 (52.90%), Query Frame = 0
Query:  135 NQSPESPSLFERAFSATPYLLPVLDSINYSRFLAFYAPDLFNPIYAALDPLLAVYKASPFINLAIYLLIVWVGRQPALSRYVRFNFQQAIILDVALVIPSILTSILREQAAPV--WVQEPVANTLFFILSASLAYVAVKLTLGQKPNEIPLISEA 287
            N  P +P+  +R  S  PYL P++D + Y+ FL     D  NP+         +Y+A PF     +  + +V  +P ++R VRFN QQAI LD+AL  P ++T +      PV   + E   + +FF L+A++ Y      LG  P++IP IS+A
Sbjct:  182 NDGPPTPT--DRIVSVLPYLFPLMDGLQYASFLLLKNQD--NPLAVLSLVTYTLYRAIPFGGFIAFFALFYVAGKPEINRLVRFNTQQAIYLDIALFFPGLITGLFAILGGPVDPTLAEITNDAIFFTLAAAILYSVGSSLLGIYPDKIPFISDA 332          
BLAST of EWM20912.1 vs. NCBI_GenBank
Match: gi|551657247|ref|XP_005831395.1| (hypothetical protein GUITHDRAFT_139670 [Guillardia theta CCMP2712] >gi|428175526|gb|EKX44415.1| hypothetical protein GUITHDRAFT_139670 [Guillardia theta CCMP2712])

HSP 1 Score: 85.8853 bits (211), Expect = 1.823e-16
Identity = 62/205 (30.24%), Postives = 101/205 (49.27%), Query Frame = 0
Query:   91 TDMSSSCFVPTSLPRAMSSLQRRRPYTPSPATSSRSSCCMR-LNANQSPESPSLFERAFSATPYLLPVLDSINYSRFLAFYAPDLFNPIYAALDPLLAVYKASPFINLAIYL-LIVWVGRQPALSRYVRFNFQQAIILDVALVIPSILTSILREQAAPVWVQEPVANTLFFILSASLAYVAVKLTLGQKPNEIPLISEAAEMTAG 293
            T ++  C VP+S        + R P   +P ++ R     + ++ N   E      R  S  PY+LP++DS++Y RFL    P L       L P + + +A P I+   +L L ++V R   + R++RFN  QA++L++ L+ P ILTS       P    E V+N  F+ ++A + Y  +    G+ P +IP+IS A     G
Sbjct:    2 TLVTGFCRVPSS--SLQLGFRERHPLRLAPVSARRDRVAKQDISMNIVKEGAL---RVVSCLPYILPMMDSLSYGRFLFQKIPLLAFIFMKPLQPFVELAQAFPMISFVAFLGLFLFVVRNRKVPRFIRFNTMQALLLEILLIFPQILTSGNMGGLIPFVFTEFVSNMTFYAIAAIVGYSCISNLRGELPCKIPVISTAVFQQIG 201          
The following BLAST results are available for this feature:
BLAST of EWM20912.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100868|gb|EWM20912.1|0.000e+0100.00plant like protein [Nannochloropsis gaditana][more]
gi|553189027|ref|XP_005854917.1|3.613e-14599.06hypothetical protein NGA_0603620 [Nannochloropsis ... [more]
gi|1189380158|gb|OSX68593.1|3.004e-2137.16hypothetical protein BU14_2526s0001, partial [Porp... [more]
gi|298713221|emb|CBJ33519.1|5.700e-1932.12conserved unknown protein [Ectocarpus siliculosus][more]
gi|219117465|ref|XP_002179527.1|1.675e-1833.55predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|545707841|ref|XP_005706234.1|8.064e-1833.13hypothetical protein Gasu_29350 [Galdieria sulphur... [more]
gi|1201310363|gb|OVA10826.1|3.336e-1733.04hypothetical protein BVC80_8199g11 [Macleaya corda... [more]
gi|544217176|ref|XP_005538732.1|5.738e-1734.64hypothetical protein, conserved [Cyanidioschyzon m... [more]
gi|1210530764|dbj|GAX10715.1|1.501e-1634.19hypothetical protein FisN_14Lh231 [Fistulifera sol... [more]
gi|551657247|ref|XP_005831395.1|1.823e-1630.24hypothetical protein GUITHDRAFT_139670 [Guillardia... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9760rna9760Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications