rna9750, rna9750 (mRNA) Nannochloropsis gaditana

Overview
Namerna9750
Unique Namerna9750
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1305
Alignment locationKK037256.1:20896..21588 +

Link to JBrowse

Properties
Property NameValue
Productbeta-ketoacyl-acyl-carrier-protein synthase ii
Orig transcript idgnl|cribi|Naga_101498g1.2300.mrna
Orig protein idgnl|cribi|Naga_101498g1.2300
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:20896..21588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101498g1gene9470Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9750rna9750-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20954.1cds9719Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9750 ID=rna9750|Name=rna9750|organism=Nannochloropsis gaditana|type=mRNA|length=1305bp
CCCTCACGTTGCCGTGCCATGGCATACCATCCAACAGCCGTGGAGAAACC
TGCGGCCGGCGCTCATAGGCCTGAGAAGATCGTGCTCGGATAAACCGACG
CCATTCACACCATGTCAACAGTGTCAAAAGGGTGATGAAGTCGTCGCCCT
CACAGAAACAAAAAGGTCGAGGGCTGGAGGACGCCACAGTCGACGCTCTC
CTCGCATTCTTGGACCTAGACGCCCAGTTTCAAAAAGTTTTGCGGGCTTT
TGTAAGGCTTGTACCCCGCATCGCCCTCTTGGCGGAGCAGGCCGTGGCGT
CCGTCGAGGTTGAGGGGGAGGGGGAGGAGGAGGGGGAGGGAGAGGGCTGC
ACCAGCATGCACGATCCAACCTCCCTCCCTGCTTGCGTGGCTTCCAGATG
CTGGGTGCAGGCGGTGGAGGAATGTGAGCGTTTGGGGGGATACCTCTCTC
CCCTCCTCCTCGCCCAGAGGGAAGTCACGATAGGGCTCGAAGGGGTCCTG
AACGGGATGGGGAGGGAGAGTGGAGCGGGGGCGAGAGCGGCCCAGGCGAT
AGCGGGGATGCTCTGTCGGGAGGGGCGTCGGCGGGAGGAAGTGATCGCGA
AAACAATCGCCTTCCTTCCCAGGTTGCTATGGGAGGGCGGGGGAGAGGAG
GGGGAGGGGGGGAGGGAGGAGGGGCGGGAGTGGCTGGGGAAGGTGGAGGC
CTCCTGGTCATTGGCTGGAAGAGAGAGCATGGTGGACGTGGCCCTAGTCA
TGGACCTGCTGGCTTCGTCCTTCGTTGTCAAAGGAATTACAGGGAAACGC
CAAGCTGTTGTAGGCCAGCTGATGGCGTTGCTCGACGCAGAGTAGGGGTT
GAAGGAGCGGTGATGAGGAAGGAAGATGAGTGAGAGGAAAGAGCTGGCGC
GGCGGGCGTGAGAGACCAAAGTAATTTAAACAAGAACATAATGGGAAAGT
TTTGGTAGACATGATTGATGAAAAAATATTTTTCGCACGGCTTGTTGAAA
GCATGTGCACGGGAAGTCTTTGTACATCCAGGGGAGGCGCCTTTTTGTCA
GTGGGATGCTGTCGATCCTTACCAAGCTTGTACGTCTTCAGGATAGGCGA
GGCAGGGAATTAAAATCGTTCCATTTTTCTTTCTCTGGCGTCTGACTGGT
ATATAGTACTCATGTTTGTATTGTTTTGAACATGGTGCCTGAGCGGGGTG
AATTGTACGGTGCAAAATAACTTATCGGATGTTTTGTCTATCGCACTCGT
CGAGCAATTCCTCCACTTCTGCTGGGCGGCTGTGGAAAGAACCAGACAGT
ACTGT
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protein sequence of rna9750

>rna9750-protein ID=rna9750-protein|Name=rna9750|organism=Nannochloropsis gaditana|type=polypeptide|length=122bp
MCCVLHFLDSLCFSFLPCFPQITVQAAMEKLSLAVVGSLAVASAFQPSSF
FLLQHPSLSSRSSPVARKAGSISMDLPPLQRKRVVITGVGAVSPLGWGDD
FWNGLIEGRSGISPTPSSPPTT
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mRNA from alignment at KK037256.1:20896..21588+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9750 ID=rna9750|Name=rna9750|organism=Nannochloropsis gaditana|type=mRNA|length=693bp|location=Sequence derived from alignment at KK037256.1:20896..21588+ (Nannochloropsis gaditana)
ATGTGCTGCGTGCTTCATTTCCTTGATTCCCtttgcttttccttccttcc
ctgcttcccacAGATCACTGTCCAGGCCGCAATGGAGAAGCTATCCCTCG
CAGTGGTAAGTCTCACGGGACGCATCTCGCCCCACAGCGAGGGCCGACGA
GTGCCATGCCGCCTGCAcgtgcctgcctccctgctcaTCAGGCatactcc
tcttccttgccttcatCCCAGGTGGGCTCCCTCGCCGTGGCTTCCGCCTT
CcagccttcttctttcttcctcctccagcatcccTCCCTGAGCAGTCGCT
CCTCCCCGGTGGCCCGTAAAGCCGGCAGTATCAGCATGGATTTGCCTCCT
CTGCAACGCAAGAGGGTGAGTTGACAGACCCTCAAGGAAagcgcaggagg
cggacgaaTAACGCGTGCCGACCAAGATCCATTGTTTTTCGTGAACCTTC
TCGatcgctccccccccctctctgtactcccctcctgctgtccctcccaa
tccctccctctcccctcccaggtgGTGATAACGGGCGTGGGAGCCGTCTC
GCCCCTCGGGTGGGGCGACGATTTCTGGAACGGTCTGATAGAAGGCCGAA
GCGGCatcgtccgcctcccttcctgggcGGACGACTACCCCGCACGGATC
GGGGGGCTAGTCCCCGACTCCTTCAAGCCCTCCGACTACATGA
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Coding sequence (CDS) from alignment at KK037256.1:20896..21588+

>rna9750 ID=rna9750|Name=rna9750|organism=Nannochloropsis gaditana|type=CDS|length=1476bp|location=Sequence derived from alignment at KK037256.1:20896..21588+ (Nannochloropsis gaditana)
ATGTGCTGCGTGCTTCATTTCCTTGATTCCCtttgcttttccttccttcc
ctgcttcccacAGATCACTGTCCAGGCCGCAATGGAGAAGCTATCCCTCG
CAGTGGTGGGCTCCCTCGCCGTGGCTTCCGCCTTCcagccttcttctttc
ttcctcctccagcatcccTCCCTGAGCAGTCGCTCCTCCCCGGTGGCCCG
TAAAGCCGGCAGTATCAGCATGGATTTGCCTCCTCTGCAACGCAAGAGGg
tgGTGATAACGGGCGTGGGAGCCGTCTCGCCCCTCGGGTGGGGCGACGAT
TTCTGGAACGGTCTGATAGAAGGCCGAAGCGGCatcTCCCCGACTCCTTC
AAGCCCTCCGACTACATGAATGTGCTGCGTGCTTCATTTCCTTGATTCCC
tttgcttttccttccttccctgcttcccacAGATCACTGTCCAGGCCGCA
ATGGAGAAGCTATCCCTCGCAGTGGTGGGCTCCCTCGCCGTGGCTTCCGC
CTTCcagccttcttctttcttcctcctccagcatcccTCCCTGAGCAGTC
GCTCCTCCCCGGTGGCCCGTAAAGCCGGCAGTATCAGCATGGATTTGCCT
CCTCTGCAACGCAAGAGGgtgGTGATAACGGGCGTGGGAGCCGTCTCGCC
CCTCGGGTGGGGCGACGATTTCTGGAACGGTCTGATAGAAGGCCGAAGCG
GCatcTCCCCGACTCCTTCAAGCCCTCCGACTACATGAATGTGCTGCGTG
CTTCATTTCCTTGATTCCCtttgcttttccttccttccctgcttcccacA
GATCACTGTCCAGGCCGCAATGGAGAAGCTATCCCTCGCAGTGGTGGGCT
CCCTCGCCGTGGCTTCCGCCTTCcagccttcttctttcttcctcctccag
catcccTCCCTGAGCAGTCGCTCCTCCCCGGTGGCCCGTAAAGCCGGCAG
TATCAGCATGGATTTGCCTCCTCTGCAACGCAAGAGGgtgGTGATAACGG
GCGTGGGAGCCGTCTCGCCCCTCGGGTGGGGCGACGATTTCTGGAACGGT
CTGATAGAAGGCCGAAGCGGCatcTCCCCGACTCCTTCAAGCCCTCCGAC
TACATGAATGTGCTGCGTGCTTCATTTCCTTGATTCCCtttgcttttcct
tccttccctgcttcccacAGATCACTGTCCAGGCCGCAATGGAGAAGCTA
TCCCTCGCAGTGGTGGGCTCCCTCGCCGTGGCTTCCGCCTTCcagccttc
ttctttcttcctcctccagcatcccTCCCTGAGCAGTCGCTCCTCCCCGG
TGGCCCGTAAAGCCGGCAGTATCAGCATGGATTTGCCTCCTCTGCAACGC
AAGAGGgtgGTGATAACGGGCGTGGGAGCCGTCTCGCCCCTCGGGTGGGG
CGACGATTTCTGGAACGGTCTGATAGAAGGCCGAAGCGGCatcTCCCCGA
CTCCTTCAAGCCCTCCGACTACATGA
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Synonyms
Publications