rna9747, rna9747 (mRNA) Nannochloropsis gaditana

Overview
Namerna9747
Unique Namerna9747
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length489
Alignment locationKK037256.1:12535..13495 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102064g1.10481.mrna
Orig protein idgnl|cribi|Naga_102064g1.10481
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:12535..13495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102064g1gene9467Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9747rna9747-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20957.1cds9716Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9747 ID=rna9747|Name=rna9747|organism=Nannochloropsis gaditana|type=mRNA|length=489bp
ATGGAAGCAGATAGTTTCATGGACGAGGGCCACAATGTTGGGAAGGAGCA
GAGACAGAAGCGGCGGTCCACCTCCTCCTTCGCCTCAATGCCAGCCACAG
CGAGCTCGGAAGGCACCCGTGAGGTTTTCGAAAGTAGCAGCGATGCAAGT
GGAAAGTCCCGCAAAAAAAGGAAAATAGATGGCAGTTTGTTCCGTCGAAT
GGCCCTGCGCGATCTCTTCCCTCCTCCTCTTTCCCGAAAACCGGTGTCGC
GCGCGGAGGACGGATGGGTGTTGGACGACAAAGAGCTCAGCCCGTACCTT
CCTCTCCTCTTGCGCCTCTTCCGCGAGATGGATGATGCCCAGGAGCCCTC
CGCTTGCACAGGGGATCAAGGAGACGGGGAGGGAGGGGAAGCGGGCGAGG
GATGGAGTAGAGCCGCCGTGTGGCAGAAGCTGATGGAGGTGGCTGTCCGG
TACCCTGTCGCGGATAAAGTGAGGGAAAGAAAGGCATGA
back to top

protein sequence of rna9747

>rna9747-protein ID=rna9747-protein|Name=rna9747|organism=Nannochloropsis gaditana|type=polypeptide|length=253bp
MWLARPPSLLLLLLSLLSSAMRASRAAVALATSAAMARAHLNASVPSPAI
PSSSPAPEEGKEGEKEGRKEGGKEGKLRGRAAVVAKAGEGVRFLLLQETI
ICKCLLRVAVTLSGGDTAEEEGEEEGGKEGGREGRRRSVEGRGAICLFLS
HLLSYHPPVLPLLLRRGELSSPALLLLADCIPAFLLFLPPSLPPSIPPFS
LRGTSLVTHARDLAVLAEFIRRYPLPAAFRSAHSAIIALLHRHLRPVVLQ
GKT
back to top

mRNA from alignment at KK037256.1:12535..13495+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9747 ID=rna9747|Name=rna9747|organism=Nannochloropsis gaditana|type=mRNA|length=961bp|location=Sequence derived from alignment at KK037256.1:12535..13495+ (Nannochloropsis gaditana)
ATGTGGCTCgcccgtccgccctccctcctcctcctcctcctctccctcct
ctcctccgccatgcGCGCCTCCCGGGCAGCTGTCGCCCTCGCCACGTCAG
CTGCCATGGCCCGCGCCCATTTGAACGCCTCCGTACCATCCCctgccatt
ccctcctcctcacccgcccccgaagaagggaaggaaggagagaaggaggg
aaggaaggagggagggaaggagggcaagcttCGGGGGCGAGCGGCTGTGG
TGGCgaaagcaggggagggagtgcgcttcctcctcctgcaagagACGATC
ATCTGCAAGTGCTTGCTACGCGTGGCCGTCACCCTAAGCGGGGGAGACac
cgcggaggaagagggggaggaggaaggcgggaaggagggagggagggagg
gcaggcgtcGGAGCgtggaagggcgaggagcgatctgcctcttcctttcc
cacctcctctcttaccaccctcccgtcctccccctcctcctccgtcgggG
AGaactctcctcccccgcccttctcctcttaGCTGACTGcatccctgctt
tcctcctcttcctccctccctctctcccgccctccatccctcccttctcc
ctccgcggcACCTCCCTGGTCACGCACGCCCGCGACCTGGCAGTCCTCGC
CGAATTCATTCGGCGATACCCTTTGCCTGCCGCGTTCCGATCCGCCCACT
CCGCCatcatcgccctcctccaccggcacctGCGTCCCGTTGTCCTGCag
gtcgtcctccctccctccctccctccctccctccctccctccctttctcc
ctccctccctccctccctccctcccttcctcccttcctcattgtTCAAAA
ATCTTCACCTTCTTGTTCCCTGACAAGCTCGTGTCCCCCCCTCAtgactc
ctccctccctccctccctccctccttacctcaGGTCTGCCTCgccgaagg
ggaagacgtgA
back to top

Coding sequence (CDS) from alignment at KK037256.1:12535..13495+

>rna9747 ID=rna9747|Name=rna9747|organism=Nannochloropsis gaditana|type=CDS|length=1524bp|location=Sequence derived from alignment at KK037256.1:12535..13495+ (Nannochloropsis gaditana)
ATGTGGCTCgcccgtccgccctccctcctcctcctcctcctctccctcct
ctcctccgccatgcGCGCCTCCCGGGCAGCTGTCGCCCTCGCCACGTCAG
CTGCCATGGCCCGCGCCCATTTGAACGCCTCCGTACCATCCCctgccatt
ccctcctcctcacccgcccccgaagaagggaaggaaggagagaaggaggg
aaggaaggagggagggaaggagggcaagcttCGGGGGCGAGCGGCTGTGG
TGGCgaaagcaggggagggagtgcgcttcctcctcctgcaagagACGATC
ATCTGCAAGTGCTTGCTACGCGTGGCCGTCACCCTAAGCGGGGGAGACac
cgcggaggaagagggggaggaggaaggcgggaaggagggagggagggagg
gcaggcgtcGGAGCgtggaagggcgaggagcgatctgcctcttcctttcc
cacctcctctcttaccaccctcccgtcctccccctcctcctccgtcgggG
AGaactctcctcccccgcccttctcctcttaGCTGACTGcatccctgctt
tcctcctcttcctccctccctctctcccgccctccatccctcccttctcc
ctccgcggcACCTCCCTGGTCACGCACGCCCGCGACCTGGCAGTCCTCGC
CGAATTCATTCGGCGATACCCTTTGCCTGCCGCGTTCCGATCCGCCCACT
CCGCCatcatcgccctcctccaccggcacctGCGTCCCGTTGTCCTGCag
gggaagacgtgAATGTGGCTCgcccgtccgccctccctcctcctcctcct
cctctccctcctctcctccgccatgcGCGCCTCCCGGGCAGCTGTCGCCC
TCGCCACGTCAGCTGCCATGGCCCGCGCCCATTTGAACGCCTCCGTACCA
TCCCctgccattccctcctcctcacccgcccccgaagaagggaaggaagg
agagaaggagggaaggaaggagggagggaaggagggcaagcttCGGGGGC
GAGCGGCTGTGGTGGCgaaagcaggggagggagtgcgcttcctcctcctg
caagagACGATCATCTGCAAGTGCTTGCTACGCGTGGCCGTCACCCTAAG
CGGGGGAGACaccgcggaggaagagggggaggaggaaggcgggaaggagg
gagggagggagggcaggcgtcGGAGCgtggaagggcgaggagcgatctgc
ctcttcctttcccacctcctctcttaccaccctcccgtcctccccctcct
cctccgtcgggGAGaactctcctcccccgcccttctcctcttaGCTGACT
Gcatccctgctttcctcctcttcctccctccctctctcccgccctccatc
cctcccttctccctccgcggcACCTCCCTGGTCACGCACGCCCGCGACCT
GGCAGTCCTCGCCGAATTCATTCGGCGATACCCTTTGCCTGCCGCGTTCC
GATCCGCCCACTCCGCCatcatcgccctcctccaccggcacctGCGTCCC
GTTGTCCTGCaggggaagacgtgA
back to top
Synonyms
Publications