rna9742, rna9742 (mRNA) Nannochloropsis gaditana

Overview
Namerna9742
Unique Namerna9742
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length353
Alignment locationKK037256.1:2627..3584 -

Link to JBrowse

Properties
Property NameValue
Productornithine cyclodeaminase
Orig transcript idgnl|cribi|Naga_100781g1.6051.mrna
Orig protein idgnl|cribi|Naga_100781g1.6051
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:2627..3584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100781g1gene9462Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9742rna9742-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20961.1cds9711Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9742 ID=rna9742|Name=rna9742|organism=Nannochloropsis gaditana|type=mRNA|length=353bp
ATGCCCTTTCAATTTGTTTCTCTCCGGGTGCCCTCCTACGCAGAAGCCGC
CCGTAGATTCTTGGAAGGAAGGAGAGAGGCTCAGAGTCCGACGCTGCCGC
TTCCAGCACCGAGGGGTAGTACCATGGCGATGAATTTTCTACGGAGGGCG
TACGCCCCTTCGGACTCCAATGTCCCCGAGGGGGACCAAGGTGGAGATAA
CTTACACATGACAGAGCAGGATCTAATCAAGGCGATGAAGCAGCTTCAGC
ACGATGATTCGGTGCCGGAGCAGACCCGCGAGCTCATCAACCAGATTTCG
CAAAAGTTTGTCCGCACGGCTGGCTCCTCGGACATGCACGACATTGGTGA
GAG
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protein sequence of rna9742

>rna9742-protein ID=rna9742-protein|Name=rna9742|organism=Nannochloropsis gaditana|type=polypeptide|length=151bp
MRGIVRRAALHQLRPRLSSSSTIASAMTMRAMATMPTPKFFDYATVKKTL
NVGQAFTAVEEAFAMLADGKVDVPQPMHIGVHETPTAGPGDCHIKGGYIE
GKTTFTVKLATELPWVRPPSLPPSLSLPPLSLDLPVCCHSFPRPPHGMYY
K
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mRNA from alignment at KK037256.1:2627..3584-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9742 ID=rna9742|Name=rna9742|organism=Nannochloropsis gaditana|type=mRNA|length=958bp|location=Sequence derived from alignment at KK037256.1:2627..3584- (Nannochloropsis gaditana)
ATGAGGGGTATAGTCCGTCGCGCCGCCCTCCACCAGCTCCGCCCACGTCT
TTCTTCATCTTCTACCATTGCTAGTGCCATGACTATGCGGGCCATGGCAA
CAATGCCCACTCCGAAATTCTTCGACTATGCCACGGTGAAGAAGGTGAGC
TCCGGGGCGTTGTGCACTCGACGCAGAAGCCATGCTCGGTCTAGTCAACG
ACACCTCTACAGGATACCCGCTCATAAACAATGACAGCATCACGAAGCCC
TTTAATCTCCCGTCCCACCCATTTCCTAGACCCTCAACGTCGGACAGGCC
TTCACCGCCGTGGAAGAAGCTTTTGCCATGCTCGCGGATGGGAAAGTCGA
CGTGCCACAGGTGAGACGCACCCAGGCTTAATTTACATACGTTTTTTTGA
ATTCTCCCGTCTCACTCATTGTCCTTCCCTTTTTATCAGCCCATGCACAT
CGGGGTTCATGAGACTCCGACAGCGGGTCCCGGCGATTGCCACATCAAGG
TACGCGTCAACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCTTC
CATCCTTCCTTCCCTCCCTCCCCCCCTTTCTCTGCCTCTCTCCTTCCCTT
TTCCTCCCCTATGCCACACCCCAGCTCATGGCGCTCCTTCACGCAATCAT
GTCACCTCATGCCTGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCACCCCCAGGGCGGTTACATCGAAGGGAAAACGACTTTTACGGTCAAA
CTGGCCACGGTCTCTTTCTACAAGAATTTAGCCAAGGGACTTCCCCCCGG
CGCGGGCATTTTTGTCGTTTGTGATGCCGTCAAAGGAGCTCCCGTGGGTA
CGCCCGCCCTCCCTCCCGCCCTCCCTCTCGCTCCCTCCTCTTTCCCTCGA
TCTTCCTGTGTGCTGTCATTCCTTCCCTCGTCCTCCTCATGGCATGTATT
ACAAATGA
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Coding sequence (CDS) from alignment at KK037256.1:2627..3584-

>rna9742 ID=rna9742|Name=rna9742|organism=Nannochloropsis gaditana|type=CDS|length=2280bp|location=Sequence derived from alignment at KK037256.1:2627..3584- (Nannochloropsis gaditana)
GAGCTCCCGTGGGTACGCCCGCCCTCCCTCCCGCCCTCCCTCTCGCTCCC
TCCTCTTTCCCTCGATCTTCCTGTGTGCTGTCATTCCTTCCCTCGTCCTC
CTCATGGCATGTATTACAAATGAGGCGGTTACATCGAAGGGAAAACGACT
TTTACGGTCAAACTGGCCACGCCCATGCACATCGGGGTTCATGAGACTCC
GACAGCGGGTCCCGGCGATTGCCACATCAAGACCCTCAACGTCGGACAGG
CCTTCACCGCCGTGGAAGAAGCTTTTGCCATGCTCGCGGATGGGAAAGTC
GACGTGCCACAGATGAGGGGTATAGTCCGTCGCGCCGCCCTCCACCAGCT
CCGCCCACGTCTTTCTTCATCTTCTACCATTGCTAGTGCCATGACTATGC
GGGCCATGGCAACAATGCCCACTCCGAAATTCTTCGACTATGCCACGGTG
AAGAAGGAGCTCCCGTGGGTACGCCCGCCCTCCCTCCCGCCCTCCCTCTC
GCTCCCTCCTCTTTCCCTCGATCTTCCTGTGTGCTGTCATTCCTTCCCTC
GTCCTCCTCATGGCATGTATTACAAATGAGGCGGTTACATCGAAGGGAAA
ACGACTTTTACGGTCAAACTGGCCACGCCCATGCACATCGGGGTTCATGA
GACTCCGACAGCGGGTCCCGGCGATTGCCACATCAAGACCCTCAACGTCG
GACAGGCCTTCACCGCCGTGGAAGAAGCTTTTGCCATGCTCGCGGATGGG
AAAGTCGACGTGCCACAGATGAGGGGTATAGTCCGTCGCGCCGCCCTCCA
CCAGCTCCGCCCACGTCTTTCTTCATCTTCTACCATTGCTAGTGCCATGA
CTATGCGGGCCATGGCAACAATGCCCACTCCGAAATTCTTCGACTATGCC
ACGGTGAAGAAGGAGCTCCCGTGGGTACGCCCGCCCTCCCTCCCGCCCTC
CCTCTCGCTCCCTCCTCTTTCCCTCGATCTTCCTGTGTGCTGTCATTCCT
TCCCTCGTCCTCCTCATGGCATGTATTACAAATGAGGCGGTTACATCGAA
GGGAAAACGACTTTTACGGTCAAACTGGCCACGCCCATGCACATCGGGGT
TCATGAGACTCCGACAGCGGGTCCCGGCGATTGCCACATCAAGACCCTCA
ACGTCGGACAGGCCTTCACCGCCGTGGAAGAAGCTTTTGCCATGCTCGCG
GATGGGAAAGTCGACGTGCCACAGATGAGGGGTATAGTCCGTCGCGCCGC
CCTCCACCAGCTCCGCCCACGTCTTTCTTCATCTTCTACCATTGCTAGTG
CCATGACTATGCGGGCCATGGCAACAATGCCCACTCCGAAATTCTTCGAC
TATGCCACGGTGAAGAAGGAGCTCCCGTGGGTACGCCCGCCCTCCCTCCC
GCCCTCCCTCTCGCTCCCTCCTCTTTCCCTCGATCTTCCTGTGTGCTGTC
ATTCCTTCCCTCGTCCTCCTCATGGCATGTATTACAAATGAGGCGGTTAC
ATCGAAGGGAAAACGACTTTTACGGTCAAACTGGCCACGCCCATGCACAT
CGGGGTTCATGAGACTCCGACAGCGGGTCCCGGCGATTGCCACATCAAGA
CCCTCAACGTCGGACAGGCCTTCACCGCCGTGGAAGAAGCTTTTGCCATG
CTCGCGGATGGGAAAGTCGACGTGCCACAGATGAGGGGTATAGTCCGTCG
CGCCGCCCTCCACCAGCTCCGCCCACGTCTTTCTTCATCTTCTACCATTG
CTAGTGCCATGACTATGCGGGCCATGGCAACAATGCCCACTCCGAAATTC
TTCGACTATGCCACGGTGAAGAAGGAGCTCCCGTGGGTACGCCCGCCCTC
CCTCCCGCCCTCCCTCTCGCTCCCTCCTCTTTCCCTCGATCTTCCTGTGT
GCTGTCATTCCTTCCCTCGTCCTCCTCATGGCATGTATTACAAATGAGGC
GGTTACATCGAAGGGAAAACGACTTTTACGGTCAAACTGGCCACGCCCAT
GCACATCGGGGTTCATGAGACTCCGACAGCGGGTCCCGGCGATTGCCACA
TCAAGACCCTCAACGTCGGACAGGCCTTCACCGCCGTGGAAGAAGCTTTT
GCCATGCTCGCGGATGGGAAAGTCGACGTGCCACAGATGAGGGGTATAGT
CCGTCGCGCCGCCCTCCACCAGCTCCGCCCACGTCTTTCTTCATCTTCTA
CCATTGCTAGTGCCATGACTATGCGGGCCATGGCAACAATGCCCACTCCG
AAATTCTTCGACTATGCCACGGTGAAGAAG
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Synonyms
Publications