EWM20961.1, cds9711 (CDS) Nannochloropsis gaditana

Overview
NameEWM20961.1
Unique Namecds9711
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:3441..3584 -
Alignment locationKK037256.1:3225..3305 -
Alignment locationKK037256.1:3086..3145 -
Alignment locationKK037256.1:2826..2873 -
Alignment locationKK037256.1:2627..2749 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20961.1
Productornithine cyclodeaminase
Orig transcript idgnl|cribi|Naga_100781g1.6051.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:3441..3584 -
KK037256.1supercontigKK037256.1:3225..3305 -
KK037256.1supercontigKK037256.1:3086..3145 -
KK037256.1supercontigKK037256.1:2826..2873 -
KK037256.1supercontigKK037256.1:2627..2749 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR023401ODC_N
Homology
BLAST of EWM20961.1 vs. NCBI_GenBank
Match: gi|585100933|gb|EWM20961.1| (ornithine cyclodeaminase [Nannochloropsis gaditana])

HSP 1 Score: 311.227 bits (796), Expect = 2.127e-107
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0
Query:    1 MRGIVRRAALHQLRPRLSSSSTIASAMTMRAMATMPTPKFFDYATVKKTLNVGQAFTAVEEAFAMLADGKVDVPQPMHIGVHETPTAGPGDCHIKGGYIEGKTTFTVKLATELPWVRPPSLPPSLSLPPLSLDLPVCCHSFPRPPHGMYYK 151
            MRGIVRRAALHQLRPRLSSSSTIASAMTMRAMATMPTPKFFDYATVKKTLNVGQAFTAVEEAFAMLADGKVDVPQPMHIGVHETPTAGPGDCHIKGGYIEGKTTFTVKLATELPWVRPPSLPPSLSLPPLSLDLPVCCHSFPRPPHGMYYK
Sbjct:    1 MRGIVRRAALHQLRPRLSSSSTIASAMTMRAMATMPTPKFFDYATVKKTLNVGQAFTAVEEAFAMLADGKVDVPQPMHIGVHETPTAGPGDCHIKGGYIEGKTTFTVKLATELPWVRPPSLPPSLSLPPLSLDLPVCCHSFPRPPHGMYYK 151          
BLAST of EWM20961.1 vs. NCBI_GenBank
Match: gi|1210529218|dbj|GAX12364.1| (hypothetical protein FisN_1Hh297 [Fistulifera solaris])

HSP 1 Score: 115.546 bits (288), Expect = 4.106e-28
Identity = 57/102 (55.88%), Postives = 68/102 (66.67%), Query Frame = 0
Query:   11 HQLRP--RLSSSSTIASAMTMRAMATMPTPKFFDYATVKKTLNVGQAFTAVEEAFAMLADGKVDVPQPMHIGVHETPTAGPGDCHIKGGYIEGKTTFTVKLA 110
            H +R   + +S S  AS  T+ A +  P P+ FDY TV   L+V  A  +VE AF  LA G+VDVP PMHIG+HET  AGPGDCHIKGGY+ G  TFTVKLA
Sbjct:   10 HLIRNAGKFTSCSVAASRRTL-ATSAFPAPRLFDYETVTSNLSVADAIESVESAFGALAKGEVDVPMPMHIGIHETAAAGPGDCHIKGGYVSGTKTFTVKLA 110          
BLAST of EWM20961.1 vs. NCBI_GenBank
Match: gi|219114779|ref|XP_002178185.1| (ornithine cyclodeaminase [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409920|gb|EEC49850.1| ornithine cyclodeaminase [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 113.62 bits (283), Expect = 2.285e-27
Identity = 54/84 (64.29%), Postives = 60/84 (71.43%), Query Frame = 0
Query:   27 MTMRAMATMPTPKFFDYATVKKTLNVGQAFTAVEEAFAMLADGKVDVPQPMHIGVHETPTAGPGDCHIKGGYIEGKTTFTVKLA 110
            + +R  A  P P+ FDY TV   L+V  A  AVE AF  LA G+VDVP PMHIGV ETPTAGPGDCHIKGGY+ G  TFTVKLA
Sbjct:   16 LRVRTFAAFPAPRLFDYDTVTSHLSVADAIDAVESAFGALAKGQVDVPMPMHIGVAETPTAGPGDCHIKGGYVLGAPTFTVKLA 99          
BLAST of EWM20961.1 vs. NCBI_GenBank
Match: gi|299116973|emb|CBN75077.1| (Ornithine cyclodeaminase [Ectocarpus siliculosus])

HSP 1 Score: 112.849 bits (281), Expect = 4.291e-27
Identity = 53/82 (64.63%), Postives = 59/82 (71.95%), Query Frame = 0
Query:   30 RAMATMPTPKFFDYATVKKTLNVGQAFTAVEEAFAMLADGKVDVPQPMHIGVHETPTAGPGDCHIKGGYIEGKTTFTVKLAT 111
            RA AT+P P+ FDY TV   L    A  AVE AF MLA GKVDVP PMHIG+ E+  AGPGDCHIKGGYI G +T+TVKLA 
Sbjct:   46 RAFATVPGPRLFDYDTVTSVLKQSDAVEAVEAAFGMLAKGKVDVPIPMHIGIDESEKAGPGDCHIKGGYISGTSTWTVKLAN 127          
BLAST of EWM20961.1 vs. NCBI_GenBank
Match: gi|1210520148|dbj|GAX21031.1| (hypothetical protein FisN_1Lh297 [Fistulifera solaris])

HSP 1 Score: 111.309 bits (277), Expect = 1.761e-26
Identity = 49/78 (62.82%), Postives = 57/78 (73.08%), Query Frame = 0
Query:   33 ATMPTPKFFDYATVKKTLNVGQAFTAVEEAFAMLADGKVDVPQPMHIGVHETPTAGPGDCHIKGGYIEGKTTFTVKLA 110
            +  P P+ FDY TV   L+V  A  +VE AF  LA G+VDVP PMHIG+HET +AGPGDCHIKGGY+ G  TFTVKLA
Sbjct:   33 SAFPAPRLFDYETVTSNLSVADAIESVEAAFGALAKGEVDVPMPMHIGIHETASAGPGDCHIKGGYVSGTKTFTVKLA 110          
BLAST of EWM20961.1 vs. NCBI_GenBank
Match: gi|397640171|gb|EJK73972.1| (hypothetical protein THAOC_04380 [Thalassiosira oceanica])

HSP 1 Score: 109.383 bits (272), Expect = 3.101e-26
Identity = 54/83 (65.06%), Postives = 59/83 (71.08%), Query Frame = 0
Query:   30 RAMAT--MPTPKFFDYATVKKTLNVGQAFTAVEEAFAMLADGKVDVPQPMHIGVHETPTAGPGDCHIKGGYIEGKTTFTVKLA 110
            RA AT   P PK FDY TV K L VG A  +VE+AF  LA GKVDVP PMHIG+ E+  AGPGDCHIKGGY+    TFTVKLA
Sbjct:   16 RAFATSAFPPPKLFDYETVTKNLTVGDAIESVEQAFKALALGKVDVPLPMHIGIEESSVAGPGDCHIKGGYVSATPTFTVKLA 98          
BLAST of EWM20961.1 vs. NCBI_GenBank
Match: gi|551540348|ref|XP_005758584.1| (ornithine cyclodeaminase [Emiliania huxleyi CCMP1516] >gi|485606266|gb|EOD06155.1| ornithine cyclodeaminase [Emiliania huxleyi CCMP1516])

HSP 1 Score: 108.997 bits (271), Expect = 9.577e-26
Identity = 50/76 (65.79%), Postives = 60/76 (78.95%), Query Frame = 0
Query:   35 MPTPKFFDYATVKKTLNVGQAFTAVEEAFAMLADGKVDVPQPMHIGVHETPTAGPGDCHIKGGYIEGKTTFTVKLA 110
            +P PK FDYATV   ++V  A +AVE AF  LA GKVDVP PMHIG+ ET +AGPGDCHIKGGY+ G++T+TVKLA
Sbjct:   22 IPPPKLFDYATVTSHIHVSDAISAVEAAFGALARGKVDVPFPMHIGIDETASAGPGDCHIKGGYVSGESTWTVKLA 97          
BLAST of EWM20961.1 vs. NCBI_GenBank
Match: gi|223993093|ref|XP_002286230.1| (ornithine cyclodeaminase [Thalassiosira pseudonana CCMP1335] >gi|220977545|gb|EED95871.1| ornithine cyclodeaminase, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 109.383 bits (272), Expect = 1.043e-25
Identity = 57/109 (52.29%), Postives = 71/109 (65.14%), Query Frame = 0
Query:    2 RGIVRRAALHQLRPRLSSSSTIASAMTMRAMATMPTPKFFDYATVKKTLNVGQAFTAVEEAFAMLADGKVDVPQPMHIGVHETPTAGPGDCHIKGGYIEGKTTFTVKLA 110
            R  +RRA + Q  P ++S+ +  +A+   A +  P P+ FDY TV   L V  A  +VEEAF  LA GKVDVP PMHIG+ E+  AGPGDCHIKGGY+    TFTVKLA
Sbjct:    7 RQAIRRALVTQ--PLVASAKS--TAVRSFASSGFPPPRLFDYETVTSNLTVADAIESVEEAFKALAKGKVDVPMPMHIGIDESSVAGPGDCHIKGGYVSATPTFTVKLA 111          
BLAST of EWM20961.1 vs. NCBI_GenBank
Match: gi|1072230328|gb|OEU15061.1| (NAD(P)-binding protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 105.145 bits (261), Expect = 3.981e-24
Identity = 47/76 (61.84%), Postives = 53/76 (69.74%), Query Frame = 0
Query:   35 MPTPKFFDYATVKKTLNVGQAFTAVEEAFAMLADGKVDVPQPMHIGVHETPTAGPGDCHIKGGYIEGKTTFTVKLA 110
             P P+ F Y  +K  L V  A  +VEEAF  LA GKVDVP PMHIG+ E+  AGPGDCHIKGGY+ G  TFTVKLA
Sbjct:   39 FPAPRLFSYEQIKSNLTVNDAIPSVEEAFGALAKGKVDVPMPMHIGIEESENAGPGDCHIKGGYVFGAKTFTVKLA 114          
BLAST of EWM20961.1 vs. NCBI_GenBank
Match: gi|255077023|ref|XP_002502166.1| (predicted protein [Micromonas commoda] >gi|226517431|gb|ACO63424.1| predicted protein [Micromonas commoda])

HSP 1 Score: 104.375 bits (259), Expect = 2.893e-23
Identity = 48/78 (61.54%), Postives = 61/78 (78.21%), Query Frame = 0
Query:   35 MPTPKFFDYATVKKTLNVGQAFT-AVEEAFAMLADGKVDVPQPMHIGVHETPTAGPGDCHIKGGYIEGKTTFTVKLAT 111
            +P PK +DY T+K ++   +  T +VE+AF+ LA+G+VDVP PMHIG+ ETP AGPGDCHIKGGYIEG  T+TVKLA 
Sbjct:  190 LPAPKLYDYDTIKSSVAPSRELTESVEDAFSQLANGRVDVPLPMHIGIAETPEAGPGDCHIKGGYIEGAPTWTVKLAN 267          
The following BLAST results are available for this feature:
BLAST of EWM20961.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100933|gb|EWM20961.1|2.127e-107100.00ornithine cyclodeaminase [Nannochloropsis gaditana... [more]
gi|1210529218|dbj|GAX12364.1|4.106e-2855.88hypothetical protein FisN_1Hh297 [Fistulifera sola... [more]
gi|219114779|ref|XP_002178185.1|2.285e-2764.29ornithine cyclodeaminase [Phaeodactylum tricornutu... [more]
gi|299116973|emb|CBN75077.1|4.291e-2764.63Ornithine cyclodeaminase [Ectocarpus siliculosus][more]
gi|1210520148|dbj|GAX21031.1|1.761e-2662.82hypothetical protein FisN_1Lh297 [Fistulifera sola... [more]
gi|397640171|gb|EJK73972.1|3.101e-2665.06hypothetical protein THAOC_04380 [Thalassiosira oc... [more]
gi|551540348|ref|XP_005758584.1|9.577e-2665.79ornithine cyclodeaminase [Emiliania huxleyi CCMP15... [more]
gi|223993093|ref|XP_002286230.1|1.043e-2552.29ornithine cyclodeaminase [Thalassiosira pseudonana... [more]
gi|1072230328|gb|OEU15061.1|3.981e-2461.84NAD(P)-binding protein [Fragilariopsis cylindrus C... [more]
gi|255077023|ref|XP_002502166.1|2.893e-2361.54predicted protein [Micromonas commoda] >gi|2265174... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9742rna9742Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications