rna9733, rna9733 (mRNA) Nannochloropsis gaditana

Overview
Namerna9733
Unique Namerna9733
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length249
Alignment locationKK037255.1:287366..288519 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102070g1.4956.mrna
Orig protein idgnl|cribi|Naga_102070g1.4956
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:287366..288519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102070g1gene9452Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9733rna9733-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20971.1cds9702Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9733 ID=rna9733|Name=rna9733|organism=Nannochloropsis gaditana|type=mRNA|length=249bp
ATGGACCATCGACATTCCATCTCGTCGTCTGATCAATCGCGAGATGCCCC
AAACGGCGTTCAAGCGGAATCACAAGAAGTAGAATCGGAAACTTCGATGA
TCGAGAGGCAGCTTTCAGGCAGTGTCGTTGCAGAGACTTCCGTCATCGGG
GAAGAGGAGTACGACGACATGGACGAAGAGGAAACAATCCGGGAGGAACG
CGATACCTTCGCCGGGCGTCGCGAGCCTTCACTGCAGCGTTATGAATGA
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protein sequence of rna9733

>rna9733-protein ID=rna9733-protein|Name=rna9733|organism=Nannochloropsis gaditana|type=polypeptide|length=182bp
MKEASAVFAATTAIKMMQENLAKIRYPEDGVTIRWGGGCVPVGLQINHCG
FSSIAYLKAVLNAEQQQDIALIQLCLETYLDPMPGRVLPLETVQALWNKD
DRFGIFNTERNPETGERYGISLWLKNDPDVREEIMIHFRINMVQYNALQT
YISKLYHSPLLEQYVLKTFLKALSPADADMSR
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mRNA from alignment at KK037255.1:287366..288519+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9733 ID=rna9733|Name=rna9733|organism=Nannochloropsis gaditana|type=mRNA|length=1154bp|location=Sequence derived from alignment at KK037255.1:287366..288519+ (Nannochloropsis gaditana)
CAGGACTTCTTGCCCAGCATGAAGGAGGCCAGCGCTGTGTTCGCCGCTAC
TACTGCGATCAAGATGATGCAGGTGCGTGGCGTCTGTGCGGCgagaggag
cgaggaggaaggggaggaagttgaGGGAGCGGGCTTGGGCACCCGGTCTC
CGGAAatgggaggggcgcggggaaattttgaaaaaattGAATTTAAATCG
AAATATAAATTTTCATATTGACCGCTCGTGGCCCAGACCTTTCACTGCCA
TGGCTTCGAGGAGGTTGACGGCAAGCTCATGACATGTCGCAATAGTTGTA
CGCgttccttcacctcccccttccttcccatccctccctccctccaggaa
AACCTGGCCAAGATCCGTTACCCCGAGGATGGCGTCACCATTcgttgggg
aggaggttgcgtGCCTGTGGGCCTCCAAATTAATCACTGCGGGTTCAGCT
CCATCGCCTATTTGAAAGCCGGTGAGGCCGACGAAGACACGTTACGGCCC
GAGAgcctctcttcccacccacccaccctccctccctccctccctccctc
cctccctctcagtATTGAACGCGGAACAGCAGCAGGACATCGCCCTCATT
CAGCTCTGCCTCGAAACTTACCTCGATCCGATGCCGGGGCGGGTCCTTCC
CTTGGAAACCGTCCAAGCCCTCTGGAACAAGGACGACCGTTTCGGGATAT
TTAACACCGAGAGAAACCCCGAGACCGGGGAACGTTACGGGATCTCCCTC
TGGCTGAAAAACGACCCGgacgtgcgggaggagatcaTGATCCATTTTCG
GATCAATATGGTTCAATACAACGCTCTCCAGACCTATATATGTACGTGAC
gataccccccccctcttgaCTCCTACGGGAGCAGGCAGAGCTGATTAATT
GTGTATGTGGGTGTGGAGGTGGatgcgaggacgagggggagggcggaaag
aagggcaatGGAGGCATTTGTGTCGGACGAGGGGGGTCGTGGTCTCCCTC
AATGTGTGCATTGTCAACTTTTTAACGAATCGTTTCAATACACAACGTTC
GCGCGCACCCAGCCAAACTCTACCACAGCCCTTTGCTCGAGCAGTACGTG
CTCAAGACCTTTCTGAAGGCCTTATCGCCAGCCGACGCCGACATGagcag
gtag
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Coding sequence (CDS) from alignment at KK037255.1:287366..288519+

>rna9733 ID=rna9733|Name=rna9733|organism=Nannochloropsis gaditana|type=CDS|length=2196bp|location=Sequence derived from alignment at KK037255.1:287366..288519+ (Nannochloropsis gaditana)
ATGAAGGAGGCCAGCGCTGTGTTCGCCGCTACTACTGCGATCAAGATGAT
GCAGgaaAACCTGGCCAAGATCCGTTACCCCGAGGATGGCGTCACCATTc
gttggggaggaggttgcgtGCCTGTGGGCCTCCAAATTAATCACTGCGGG
TTCAGCTCCATCGCCTATTTGAAAGCCGtATTGAACGCGGAACAGCAGCA
GGACATCGCCCTCATTCAGCTCTGCCTCGAAACTTACCTCGATCCGATGC
CGGGGCGGGTCCTTCCCTTGGAAACCGTCCAAGCCCTCTGGAACAAGGAC
GACCGTTTCGGGATATTTAACACCGAGAGAAACCCCGAGACCGGGGAACG
TTACGGGATCTCCCTCTGGCTGAAAAACGACCCGgacgtgcgggaggaga
tcaTGATCCATTTTCGGATCAATATGGTTCAATACAACGCTCTCCAGACC
TATATATCCAAACTCTACCACAGCCCTTTGCTCGAGCAGTACGTGCTCAA
GACCTTTCTGAAGGCCTTATCGCCAGCCGACGCCGACATGagcaggtagA
TGAAGGAGGCCAGCGCTGTGTTCGCCGCTACTACTGCGATCAAGATGATG
CAGgaaAACCTGGCCAAGATCCGTTACCCCGAGGATGGCGTCACCATTcg
ttggggaggaggttgcgtGCCTGTGGGCCTCCAAATTAATCACTGCGGGT
TCAGCTCCATCGCCTATTTGAAAGCCGtATTGAACGCGGAACAGCAGCAG
GACATCGCCCTCATTCAGCTCTGCCTCGAAACTTACCTCGATCCGATGCC
GGGGCGGGTCCTTCCCTTGGAAACCGTCCAAGCCCTCTGGAACAAGGACG
ACCGTTTCGGGATATTTAACACCGAGAGAAACCCCGAGACCGGGGAACGT
TACGGGATCTCCCTCTGGCTGAAAAACGACCCGgacgtgcgggaggagat
caTGATCCATTTTCGGATCAATATGGTTCAATACAACGCTCTCCAGACCT
ATATATCCAAACTCTACCACAGCCCTTTGCTCGAGCAGTACGTGCTCAAG
ACCTTTCTGAAGGCCTTATCGCCAGCCGACGCCGACATGagcaggtagAT
GAAGGAGGCCAGCGCTGTGTTCGCCGCTACTACTGCGATCAAGATGATGC
AGgaaAACCTGGCCAAGATCCGTTACCCCGAGGATGGCGTCACCATTcgt
tggggaggaggttgcgtGCCTGTGGGCCTCCAAATTAATCACTGCGGGTT
CAGCTCCATCGCCTATTTGAAAGCCGtATTGAACGCGGAACAGCAGCAGG
ACATCGCCCTCATTCAGCTCTGCCTCGAAACTTACCTCGATCCGATGCCG
GGGCGGGTCCTTCCCTTGGAAACCGTCCAAGCCCTCTGGAACAAGGACGA
CCGTTTCGGGATATTTAACACCGAGAGAAACCCCGAGACCGGGGAACGTT
ACGGGATCTCCCTCTGGCTGAAAAACGACCCGgacgtgcgggaggagatc
aTGATCCATTTTCGGATCAATATGGTTCAATACAACGCTCTCCAGACCTA
TATATCCAAACTCTACCACAGCCCTTTGCTCGAGCAGTACGTGCTCAAGA
CCTTTCTGAAGGCCTTATCGCCAGCCGACGCCGACATGagcaggtagATG
AAGGAGGCCAGCGCTGTGTTCGCCGCTACTACTGCGATCAAGATGATGCA
GgaaAACCTGGCCAAGATCCGTTACCCCGAGGATGGCGTCACCATTcgtt
ggggaggaggttgcgtGCCTGTGGGCCTCCAAATTAATCACTGCGGGTTC
AGCTCCATCGCCTATTTGAAAGCCGtATTGAACGCGGAACAGCAGCAGGA
CATCGCCCTCATTCAGCTCTGCCTCGAAACTTACCTCGATCCGATGCCGG
GGCGGGTCCTTCCCTTGGAAACCGTCCAAGCCCTCTGGAACAAGGACGAC
CGTTTCGGGATATTTAACACCGAGAGAAACCCCGAGACCGGGGAACGTTA
CGGGATCTCCCTCTGGCTGAAAAACGACCCGgacgtgcgggaggagatca
TGATCCATTTTCGGATCAATATGGTTCAATACAACGCTCTCCAGACCTAT
ATATCCAAACTCTACCACAGCCCTTTGCTCGAGCAGTACGTGCTCAAGAC
CTTTCTGAAGGCCTTATCGCCAGCCGACGCCGACATGagcaggtag
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Synonyms
Publications