EWM20971.1, cds9702 (CDS) Nannochloropsis gaditana

Overview
NameEWM20971.1
Unique Namecds9702
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:287384..287437 +
Alignment locationKK037255.1:287713..287836 +
Alignment locationKK037255.1:287928..288206 +
Alignment locationKK037255.1:288428..288519 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20971.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102070g1.4956.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:287384..287437 +
KK037255.1supercontigKK037255.1:287713..287836 +
KK037255.1supercontigKK037255.1:287928..288206 +
KK037255.1supercontigKK037255.1:288428..288519 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM20971.1 vs. NCBI_GenBank
Match: gi|585100954|gb|EWM20971.1| (hypothetical protein Naga_102070g1 [Nannochloropsis gaditana])

HSP 1 Score: 383.259 bits (983), Expect = 5.996e-135
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0
Query:    1 MKEASAVFAATTAIKMMQENLAKIRYPEDGVTIRWGGGCVPVGLQINHCGFSSIAYLKAVLNAEQQQDIALIQLCLETYLDPMPGRVLPLETVQALWNKDDRFGIFNTERNPETGERYGISLWLKNDPDVREEIMIHFRINMVQYNALQTYISKLYHSPLLEQYVLKTFLKALSPADADMSR 182
            MKEASAVFAATTAIKMMQENLAKIRYPEDGVTIRWGGGCVPVGLQINHCGFSSIAYLKAVLNAEQQQDIALIQLCLETYLDPMPGRVLPLETVQALWNKDDRFGIFNTERNPETGERYGISLWLKNDPDVREEIMIHFRINMVQYNALQTYISKLYHSPLLEQYVLKTFLKALSPADADMSR
Sbjct:    1 MKEASAVFAATTAIKMMQENLAKIRYPEDGVTIRWGGGCVPVGLQINHCGFSSIAYLKAVLNAEQQQDIALIQLCLETYLDPMPGRVLPLETVQALWNKDDRFGIFNTERNPETGERYGISLWLKNDPDVREEIMIHFRINMVQYNALQTYISKLYHSPLLEQYVLKTFLKALSPADADMSR 182          
BLAST of EWM20971.1 vs. NCBI_GenBank
Match: gi|585104049|gb|EWM23168.1| (uncharacterized protein Naga_100043g43 [Nannochloropsis gaditana])

HSP 1 Score: 138.658 bits (348), Expect = 1.402e-34
Identity = 71/178 (39.89%), Postives = 103/178 (57.87%), Query Frame = 0
Query:    1 MKEASAVFAATTAIKMMQENLAKIRYPEDGVTIRWGGGCVPVGLQINHCGFSSIAYLKAVLNAEQQQDIALIQLCLETYLDPMPGRVLPLETVQALWNKDDRFGIFNTERNPETGERYGISLWLKNDPDVREEIMIHFRINMVQYNALQTYISKLYHSPLLEQYVLKTFLKALSPADA 178
            +KE + V A   A+  M + L  ++ P +    RWGGGC    +    CGFS++A   + ++   + D+ L+QLC+ T L       +PL TV+ LW+  D + I N +R     ERYGIS WL  D DVR+ I +HF I + QYNAL+ Y+  +Y SP+LE  V+K FL++L P DA
Sbjct:  428 LKENAVVMAIQMAVDAMTQILNAMQAPSEATATRWGGGCT-SNMFGKICGFSTVATFFSAVDKRNKMDLNLLQLCINTKL--TEAEQIPLATVRRLWDPTDVYSIMNVDRG-SAAERYGISYWLWGDVDVRDTIAMHFGITIRQYNALRAYLLDIYRSPMLEMAVVKIFLESLPPEDA 601          
BLAST of EWM20971.1 vs. NCBI_GenBank
Match: gi|585106442|gb|EWM24842.1| (scavenger receptor class member 2 [Nannochloropsis gaditana])

HSP 1 Score: 81.6481 bits (200), Expect = 5.555e-15
Identity = 35/87 (40.23%), Postives = 52/87 (59.77%), Query Frame = 0
Query:    1 MKEASAVFAATTAIKMMQENLAKIRYPEDGVTIRWGGGCVPVGLQINHCGFSSIAYLKAVLNAEQQQDIALIQLCLETYLDPMPGRV 87
            +KE +    A   + ++ E L K+ Y EDG  IRWGGGC   G+ +  CGF   A+LKA++  E+++D  L  +CL+T L   PG+V
Sbjct:  334 LKERAVAATAVKTLALIDEALTKLNYQEDGTAIRWGGGCASAGM-VQQCGFEKAAFLKAMIGKERKEDAELYHMCLDTGLGSEPGQV 419          
The following BLAST results are available for this feature:
BLAST of EWM20971.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585100954|gb|EWM20971.1|5.996e-135100.00hypothetical protein Naga_102070g1 [Nannochloropsi... [more]
gi|585104049|gb|EWM23168.1|1.402e-3439.89uncharacterized protein Naga_100043g43 [Nannochlor... [more]
gi|585106442|gb|EWM24842.1|5.555e-1540.23scavenger receptor class member 2 [Nannochloropsis... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9733rna9733Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications