rna9729, rna9729 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9729
Unique Name	rna9729
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1725
Alignment location	KK037255.1:276923..278502 -

Link to JBrowse

Properties


Property Name	Value
Product	FAS1 domain protein
Orig transcript id	gnl\|cribi\|Naga_100442g3.7158.mrna
Orig protein id	gnl\|cribi\|Naga_100442g3.7158
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037255.1	supercontig	KK037255.1:276923..278502 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100442g3	gene9448	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9729	rna9729-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20973.1	cds9698	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037255.1:276923..278502-
coding sequence from alignment at KK037255.1:276923..278502-

mRNA sequence

>rna9729 ID=rna9729|Name=rna9729|organism=Nannochloropsis gaditana|type=mRNA|length=1725bp
ATGGATCGGTTGGGACCTGCCAAGTGGTGCGGACGCCAAAGCATCTTAGT
TACATATAAGGAACAAAAAAGAAAAGGGGCTGATAAAAAAAGTGGCAAAG
ATGACGTACGGGTGCGGGCCTGTGCTCTCCCCTTTCGACCTAGCATGGCC
GGGCTCCCTACCTCCACCGCCCGGGCACCTCAACAACGGCAGCCCAAAAG
GGGACTGCAGGGTCCTGAGACAGAGTTGATAGATGCCAAGCTTTTGGAAA
TGCAATTTAAACTTCTGTCCACGAACGAGCCCGTGACGGAGGTAGAGCTG
TACGCATGCCAACCCTGGTTCCTCCCCGAGCATTTCGCCGGAGTGGTCGA
AGAACTGGCAGCGGAGGGACATTGCGGGCATCCTGTGTGCAAAAAAACTT
TGAACGCGACCCAGGGAGGCTCTGGCGCTAGTGGTGTCAAAGTCGGACAA
AAACGGGTGGATATGAAGGCAAAAAAAGTGGTGGATATCACTCAGGTGCA
TGCCATGTTTTGCAGTGATGTGTGCGAGGGGGCGGCACGCTCCTTTCTGG
CCCAATTGTCCACGGAGGGCATTTGTTTCCGTCCGGTTGCGCGTGCTTAT
CTGGCACAGAAGCGGGCACAGGCCGCGGGGCAAGAACTCGTCACGCCGTC
CCCGTCCTACGTGTACGACCTCGTGGCCAAGAGGCATGAGGCACGAGGGA
ATCCGGTGGATAAAAATGGAATGGACCGGAAAGCAAACAAGGCCATGGCA
TGCGAGGAAAAGAACGAGGAAGGCCCTGGACCTCCAGGCGTGCCCGTCCC
ACCTCCAGGTCAGCCTCGAGGCCCCCCTGGACTAGGCACAGGCCACGAAG
GCTGTGACAGTGAGAAGATGGAGTTGGGAGGGAAGGAAGGTCGGGGCCCC
TTGAAGATGAAGGTGCTAGAGCGAGAGCGACCGGTGGCGCCCCGTCCCTT
AAGCGTGTGGACGACGCGAGGAGACATCGTGGAGGGGCATGCGGTGTCCG
ACATGCTATCGGGTACACAAAAAGAGCGGCGACGTGTCGAGGAAGGAAGG
CCAAGAGATGGGGAGGGGCAGGAAGGAGAGGAAAAGGAGGAGGAGTCGGT
CTCGATGGGCCGCGGGGACGGGGAGGACGCAGACGAAGCATTCGGAGCCC
CGGTGGGGCATCTTCGGAGCCTGGTCCGGGAGGCCCCTGCGATGGTAGCG
GGGGATTTCTTCTTGCAGCTATGGTCAACCCTGAGCAGTTGGGTGTCCCC
CGCCTCGCATCAATACGTCGCCCTTCTCGCATCGAACGGGGGCGACGAGA
ACGCTGCTTTACGGACCGTACATGGCAACCCCACGGATCCCTTGCAGGTA
CAACGGGCACTTCTAGACGTTCAGCAGCGGGAAAGGGCGCTCGGTGGTAT
GTTGGCGCATCACGTGACGGGCGCGATGGAGATAATGGGGTTGACGAAAG
CCCTGGCGCCCTCGACGGGCACTCATCGATTGCAAGGACTCCTTTCTACA
TTTGACTTATACCGCCCATTGCCCTCTTTTCTGTCATCTGCGCATTATAC
GGCGATGGCGTTGCTGTTCATGGAAGTTTTGTTCCAGGGCGAGCTGACGG
AATTGGAGGGAGAGGAGGACGAGCAGGAGCAGAGGGAGAGGTTGAAAGAG
AGTGTCTTGCAGAAACTAAAACTGTCGACGGCGGAGTATGCATCGTTGAA
ACGTGACTTGGAAATATCGCCTTAA

protein sequence of rna9729

>rna9729-protein ID=rna9729-protein|Name=rna9729|organism=Nannochloropsis gaditana|type=polypeptide|length=254bp
MCFGSALATSACLQFYATHGKIQVASFFISSHSFILLLSPKQHIPLPYTM
KFLATTLVALAAPALAFMPMARVPATPATALSAVIKAGGDYYPGQVDYGS
SSIDVYETLKQTGKFNQLAKALEATGLDKALAQENGIFCLYAPTDEAFEK
AGGVDKLLEDKAGLEEVLKYHVVKLFVKDKEHIRSFRLSNKATLQGGKVR
VQVKANPDGESFVIFNNGEAQCVDGLSDIDAVNGHIHGISGILTPQAGGS
IPVK

mRNA from alignment at KK037255.1:276923..278502-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9729 ID=rna9729|Name=rna9729|organism=Nannochloropsis gaditana|type=mRNA|length=1580bp|location=Sequence derived from alignment at KK037255.1:276923..278502- (Nannochloropsis gaditana)
ATGTGTTTTGGCTCGGCTTTGGCAACTTCAGCTTGCCTACAATTCTACGC
CACACATGGCAAGATACAGGTTGCCTCTTTCTTCATCTCGTCCCACTCAT
TCATTCTTCTTCTGTCACCCAAACAGCACATTCCTCTCCCCTACACCATG
AAGTTCTTGGCCACTACCCTCGTCGCTCTCGCCGCCCCGGCCCTGGCTTT
CATGCCCATGGCCCGTAAGTTAACCCAACGCACTGACTGAGTGAGCATCG
AGGAAGACCTTTGTCCGTGTTGATTGTGTGCTGGAGCAGATACTTCAGAT
GAAGCAGTGATTTTTCCGTATGAGCTTCCCCTCATACCCTGATTCTCCCC
GGCGCTCTGGTCTGCTCTCTTCACACCGAGACTGTGGGCCCCGCGTTAGT
CTGCCTCTGACGTCCATTCCACAACAATCTGATATGTATTAACACTGCCT
GTGGTTTCGATCGCAATCGGCCAAACAGGCTCTTTAACAGGGCCCCCCCT
GCACGTCCCTCCATCCTTTGTCTACCCTCATTCCCTCCCCTCCCCCCTCC
CTCACGCCCTCCTCAGGCGTGCCTGCCACCCCTGCCACGGCCCTGTCCGC
GGTGATCAAAGCCGGTGGAGACTACTATCCCGGGCAGGTCGACTACGGTT
CCTCCTCCATCGACGTCTACGAAACCCTGAAGCAGACGGGGAAGTTCAAC
CAGCTTGCCAAGGCCTTGGAAGCGACCGGGTTGGATAAGGCCCTGGCGCA
GGAGAACGGCATTTTTTGCCTGTACGCGCCCACGGACGAGGCCTTCGAGA
AGGCGGGCGGCGTGGACAAGCTTTTGGAGGACAAAGCGGGGCTGGAGGAG
GTGTTGAAGTACCACGTGGTGAAGCTCTTCGTCAAGGACAAGGAGCACAT
CCGCTCGTTCCGCCTCTCCAACAAGGTAGGCAGGACCGGCGAGTCGAACA
GCGAGAGAGGCAAAGGAGGTGGTGTGGATCGTCCAAGATGCGTCTAGGCA
CTTGGAGGAATCCTTCCTCACACAGCGCCTGCCCCGCTGGGCTACCCCCC
CGGTCCCGCATCCTCTTCCTTCCCATTCTAACGTCCCAACCCCTATGTCC
CTCCCTCCCTCCCTCCCTCTCTCCAGGCGACCCTGCAGGGTGGCAAGGTC
CGGGTCCAGGTCAAGGCCAACCCAGATGGGGAATCCTTCGTCATCTTCAA
CAACGGCGAAGCCCAGTGCGTGGACGGCCTCTCCGATATTGACGCGGTCA
ACGGCCACATTCATGGCATCTCTGGTATCCTGGTGAGTTATTGGAGGAGG
AAAGTTTTCAAGACGGATATGGCTGTGTACCAAGAGCTTTTTGGTAGGGG
GAGGTCTGAGGCGAGGAGGAGGGGCTGGAGGAGGATGCGTCCGTCCGGGA
TCTCCATGGCTTCCGTGGCAGAGCCTTGGAACCGGTGATGGCAGATCTGC
GTTGGTCTCTTACTTTCACGCGGTGGCAGGCATTCATGCTTTCCGTACCT
TCTCTCTGCCTGCTTATTCCGCTTCTTTTCGTCACCACCCCCAGACCCCC
CAGGCCGGCGGCTCCATTCCCGTGAAATAA

Coding sequence (CDS) from alignment at KK037255.1:276923..278502-

>rna9729 ID=rna9729|Name=rna9729|organism=Nannochloropsis gaditana|type=CDS|length=3060bp|location=Sequence derived from alignment at KK037255.1:276923..278502- (Nannochloropsis gaditana)
ACCCCCCAGGCCGGCGGCTCCATTCCCGTGAAATAAGCGACCCTGCAGGG
TGGCAAGGTCCGGGTCCAGGTCAAGGCCAACCCAGATGGGGAATCCTTCG
TCATCTTCAACAACGGCGAAGCCCAGTGCGTGGACGGCCTCTCCGATATT
GACGCGGTCAACGGCCACATTCATGGCATCTCTGGTATCCTGGCGTGCCT
GCCACCCCTGCCACGGCCCTGTCCGCGGTGATCAAAGCCGGTGGAGACTA
CTATCCCGGGCAGGTCGACTACGGTTCCTCCTCCATCGACGTCTACGAAA
CCCTGAAGCAGACGGGGAAGTTCAACCAGCTTGCCAAGGCCTTGGAAGCG
ACCGGGTTGGATAAGGCCCTGGCGCAGGAGAACGGCATTTTTTGCCTGTA
CGCGCCCACGGACGAGGCCTTCGAGAAGGCGGGCGGCGTGGACAAGCTTT
TGGAGGACAAAGCGGGGCTGGAGGAGGTGTTGAAGTACCACGTGGTGAAG
CTCTTCGTCAAGGACAAGGAGCACATCCGCTCGTTCCGCCTCTCCAACAA
GATGTGTTTTGGCTCGGCTTTGGCAACTTCAGCTTGCCTACAATTCTACG
CCACACATGGCAAGATACAGGTTGCCTCTTTCTTCATCTCGTCCCACTCA
TTCATTCTTCTTCTGTCACCCAAACAGCACATTCCTCTCCCCTACACCAT
GAAGTTCTTGGCCACTACCCTCGTCGCTCTCGCCGCCCCGGCCCTGGCTT
TCATGCCCATGGCCCACCCCCCAGGCCGGCGGCTCCATTCCCGTGAAATA
AGCGACCCTGCAGGGTGGCAAGGTCCGGGTCCAGGTCAAGGCCAACCCAG
ATGGGGAATCCTTCGTCATCTTCAACAACGGCGAAGCCCAGTGCGTGGAC
GGCCTCTCCGATATTGACGCGGTCAACGGCCACATTCATGGCATCTCTGG
TATCCTGGCGTGCCTGCCACCCCTGCCACGGCCCTGTCCGCGGTGATCAA
AGCCGGTGGAGACTACTATCCCGGGCAGGTCGACTACGGTTCCTCCTCCA
TCGACGTCTACGAAACCCTGAAGCAGACGGGGAAGTTCAACCAGCTTGCC
AAGGCCTTGGAAGCGACCGGGTTGGATAAGGCCCTGGCGCAGGAGAACGG
CATTTTTTGCCTGTACGCGCCCACGGACGAGGCCTTCGAGAAGGCGGGCG
GCGTGGACAAGCTTTTGGAGGACAAAGCGGGGCTGGAGGAGGTGTTGAAG
TACCACGTGGTGAAGCTCTTCGTCAAGGACAAGGAGCACATCCGCTCGTT
CCGCCTCTCCAACAAGATGTGTTTTGGCTCGGCTTTGGCAACTTCAGCTT
GCCTACAATTCTACGCCACACATGGCAAGATACAGGTTGCCTCTTTCTTC
ATCTCGTCCCACTCATTCATTCTTCTTCTGTCACCCAAACAGCACATTCC
TCTCCCCTACACCATGAAGTTCTTGGCCACTACCCTCGTCGCTCTCGCCG
CCCCGGCCCTGGCTTTCATGCCCATGGCCCACCCCCCAGGCCGGCGGCTC
CATTCCCGTGAAATAAGCGACCCTGCAGGGTGGCAAGGTCCGGGTCCAGG
TCAAGGCCAACCCAGATGGGGAATCCTTCGTCATCTTCAACAACGGCGAA
GCCCAGTGCGTGGACGGCCTCTCCGATATTGACGCGGTCAACGGCCACAT
TCATGGCATCTCTGGTATCCTGGCGTGCCTGCCACCCCTGCCACGGCCCT
GTCCGCGGTGATCAAAGCCGGTGGAGACTACTATCCCGGGCAGGTCGACT
ACGGTTCCTCCTCCATCGACGTCTACGAAACCCTGAAGCAGACGGGGAAG
TTCAACCAGCTTGCCAAGGCCTTGGAAGCGACCGGGTTGGATAAGGCCCT
GGCGCAGGAGAACGGCATTTTTTGCCTGTACGCGCCCACGGACGAGGCCT
TCGAGAAGGCGGGCGGCGTGGACAAGCTTTTGGAGGACAAAGCGGGGCTG
GAGGAGGTGTTGAAGTACCACGTGGTGAAGCTCTTCGTCAAGGACAAGGA
GCACATCCGCTCGTTCCGCCTCTCCAACAAGATGTGTTTTGGCTCGGCTT
TGGCAACTTCAGCTTGCCTACAATTCTACGCCACACATGGCAAGATACAG
GTTGCCTCTTTCTTCATCTCGTCCCACTCATTCATTCTTCTTCTGTCACC
CAAACAGCACATTCCTCTCCCCTACACCATGAAGTTCTTGGCCACTACCC
TCGTCGCTCTCGCCGCCCCGGCCCTGGCTTTCATGCCCATGGCCCACCCC
CCAGGCCGGCGGCTCCATTCCCGTGAAATAAGCGACCCTGCAGGGTGGCA
AGGTCCGGGTCCAGGTCAAGGCCAACCCAGATGGGGAATCCTTCGTCATC
TTCAACAACGGCGAAGCCCAGTGCGTGGACGGCCTCTCCGATATTGACGC
GGTCAACGGCCACATTCATGGCATCTCTGGTATCCTGGCGTGCCTGCCAC
CCCTGCCACGGCCCTGTCCGCGGTGATCAAAGCCGGTGGAGACTACTATC
CCGGGCAGGTCGACTACGGTTCCTCCTCCATCGACGTCTACGAAACCCTG
AAGCAGACGGGGAAGTTCAACCAGCTTGCCAAGGCCTTGGAAGCGACCGG
GTTGGATAAGGCCCTGGCGCAGGAGAACGGCATTTTTTGCCTGTACGCGC
CCACGGACGAGGCCTTCGAGAAGGCGGGCGGCGTGGACAAGCTTTTGGAG
GACAAAGCGGGGCTGGAGGAGGTGTTGAAGTACCACGTGGTGAAGCTCTT
CGTCAAGGACAAGGAGCACATCCGCTCGTTCCGCCTCTCCAACAAGATGT
GTTTTGGCTCGGCTTTGGCAACTTCAGCTTGCCTACAATTCTACGCCACA
CATGGCAAGATACAGGTTGCCTCTTTCTTCATCTCGTCCCACTCATTCAT
TCTTCTTCTGTCACCCAAACAGCACATTCCTCTCCCCTACACCATGAAGT
TCTTGGCCACTACCCTCGTCGCTCTCGCCGCCCCGGCCCTGGCTTTCATG
CCCATGGCCC

Synonyms

Publications