rna9726, rna9726 (mRNA) Nannochloropsis gaditana

Overview
Namerna9726
Unique Namerna9726
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1238
Alignment locationKK037255.1:264915..265693 +

Link to JBrowse

Properties
Property NameValue
Productoxygen-independent coproporphyrinogen iii oxidase
Orig transcript idgnl|cribi|Naga_102067g1.5755.mrna
Orig protein idgnl|cribi|Naga_102067g1.5755
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:264915..265693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102067g1gene9445Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9726rna9726-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20978.1cds9695Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9726 ID=rna9726|Name=rna9726|organism=Nannochloropsis gaditana|type=mRNA|length=1238bp
CGTCCTTACTGTATAAAGGCAACGTGTTGCACGAGCAAAAACAAACGGGT
TTGGAGTGCTTCACCAAATTATGAAGGATTTAATTAATTACGTGCCTGAC
ATACCCCCCATCTCGCCTTCGAGCAGAGAAGAGCGAGACAGACAATTTTG
ACACCAGGACAGCGACAACACCATGTAACTGAATGGAGGTAGCCATACCC
ATGTCTATATGCTTCGAAGAGAATGGGCCTGTATCCATTTACTGGCATGC
TTTTTCAATGTGATAGGCTTGAGAGCAAACGTCAAGATACCTTTGGGCCC
AGGCAAAGAGACGTGCTGCCGCCTGCCTCCCGCTTTATGTACGCCCTCCC
CGTGAACGCGATCTATAAGACGACTTCATTCCACGTGTACATCCTCTCCT
TGAATGTCAAAGCAGGGCATCGTGTGTGCGTCCTTTCCACGCCGCTCTTG
CAAACCTGCCAACCGACAAAGAGCACTATCGGGTGCGTGCTCTCCGAGAC
GGGCAGGTTCTTAATCCCTCAAACCACAAAAGGTCATGTAAGGGGCTAGG
GTCCACAATGGAATGCCCATGTCCCACACGTGTCGCGTGCGACGAGGCAT
CTTTGCTATCGATGTCATCGTCGCCTCGTCCTCTCCTCTCTTTAACCTCC
CCCAACCCCTCCCCTTCCCTTCTCGCACACTTCCCTTTCGACCTCCCTCA
GCGCATGGACGCCCCTCCCCCCTCGCTCCCCCTTTCACGCGAAGGCAACC
CTCCTTCTGCCAGTATGGGGCCCGCCCCCGCAACACCCGCTTCGACAACG
TCCCCCCTCACTAGCGCGTGCCGGCTTGCGGCTTTTCCCCTCCCCACCGG
AGCCAATGCTTTTCCCTCCCTGATGGCCAGCCTGGAGGCAGGGAGCGGGG
GAGGGGAGGATCGGGAGGGCGGAGGGACCTGGGCGACGCGTCAGAGTGCT
GCACGCTACGACCACGGGGCCCTCCCTCCAAGGACTCTGACTCCTTCCCC
CGCCTGCCTGTCTCCCGCATCCCTCACCCCCAAGGCCCGAAGCTCCCCCT
CCCCCCCTCCCCCCCTCCCTCCATCCCTCCCTCCCTCCCTCATACCCTCC
CTCGCACGGATACCCCGCAGGGTGTGGAGGGGAAGGAGGGCGGGAGGGAG
GGCGGGGTCGGGGGGCGGTGGGGAGATTGGGTCGGTGCCGTCATGCGCGG
GCCTGCCCTTGCCACGGGCGCCACAGAGCCGTTGGTGA
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protein sequence of rna9726

>rna9726-protein ID=rna9726-protein|Name=rna9726|organism=Nannochloropsis gaditana|type=polypeptide|length=149bp
MRSLRKRRRRGDHSAPRLLLLLCLVLLLLLPSLSFLPFPPCTPSSLLASP
PPTRPSAHSDASPPTPPSLPPSPLPRALYIHLPFCRRRCFYCDFPIKVVG
DGAHAADEYSEAYINLLLREMQAAYRRTAEDGGRAEGGGEGGREGGREG
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mRNA from alignment at KK037255.1:264915..265693+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9726 ID=rna9726|Name=rna9726|organism=Nannochloropsis gaditana|type=mRNA|length=779bp|location=Sequence derived from alignment at KK037255.1:264915..265693+ (Nannochloropsis gaditana)
AGAATGTTTGACATGTGTGCGGGTGTTTTGGAATAAAAGGGGGGTGATTG
CACTCAAAAGTTCTCCCTTTTCAGGCCGTGGTTTTACGCTCCTGTTCAAC
CGCCGTGCTGCCAGTTGTGGCCTCCCCCATGACAAGCGGCTACCGAAGGC
GTGCAAGTCAAATAATGCAATGGAAGGCATGATGTCATGTGGATGGAAGA
CTGACAAACCCTCAGCatcgctctctcccttcttgtgTTTTTCCCCCTGC
TCAAGACTCCTGACaccgcccctcgcccagccCTAGCCCTATCTCCCATC
GCCCGCTCCTCGCGACAGCACGAGCATTGCTATGCGCAGCCTtcggaaaa
gaaggcggaggggcgaTCACTCagctcctcgtctcctcctcctcctctgt
ctcgtccttctcctcctcctcccctccctctccttcctaccctttccacc
ctgtacgccctcctccctcctcgcttctcccccccccacccgtccctccg
cccactccGATGCAAGCCCACccacgccgccctccctccctccttctccg
ctaCCGCGGGCCCTCTACATCCATCTCCCGTTCTGTCGGCGTCGGTGCTT
CTATTGCGACTTTCCCATCAAGGTGGTGGGAGACGGCGCCCATGCGGCCG
ACGAATACAGCGAGGCCTACATAAACCTGCTCCTGCGGGAGATGCAGGCT
GCCTACAGAAGGACAGCGGAGgacggtgggagggcggaaggagggggcga
gggagggcgggagggagggagggaaggag
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Coding sequence (CDS) from alignment at KK037255.1:264915..265693+

>rna9726 ID=rna9726|Name=rna9726|organism=Nannochloropsis gaditana|type=CDS|length=448bp|location=Sequence derived from alignment at KK037255.1:264915..265693+ (Nannochloropsis gaditana)
ATGCGCAGCCTtcggaaaagaaggcggaggggcgaTCACTCagctcctcg
tctcctcctcctcctctgtctcgtccttctcctcctcctcccctccctct
ccttcctaccctttccaccctgtacgccctcctccctcctcgcttctccc
ccccccacccgtccctccgcccactccGATGCAAGCCCACccacgccgcc
ctccctccctccttctccgctaCCGCGGGCCCTCTACATCCATCTCCCGT
TCTGTCGGCGTCGGTGCTTCTATTGCGACTTTCCCATCAAGGTGGTGGGA
GACGGCGCCCATGCGGCCGACGAATACAGCGAGGCCTACATAAACCTGCT
CCTGCGGGAGATGCAGGCTGCCTACAGAAGGACAGCGGAGgacggtggga
gggcggaaggagggggcgagggagggcgggagggagggagggaaggag
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Synonyms
Publications