EWM20978.1, cds9695 (CDS) Nannochloropsis gaditana

Overview
NameEWM20978.1
Unique Namecds9695
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:265246..265693 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20978.1
Productoxygen-independent coproporphyrinogen iii oxidase
Partialtrue
Orig transcript idgnl|cribi|Naga_102067g1.5755.mrna
GbkeyCDS
End range.
End range265693
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:265246..265693 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Homology
BLAST of EWM20978.1 vs. NCBI_GenBank
Match: gi|585100968|gb|EWM20978.1| (oxygen-independent coproporphyrinogen iii oxidase, partial [Nannochloropsis gaditana])

HSP 1 Score: 290.812 bits (743), Expect = 2.560e-99
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0
Query:    1 MRSLRKRRRRGDHSAPRLLLLLCLVLLLLLPSLSFLPFPPCTPSSLLASPPPTRPSAHSDASPPTPPSLPPSPLPRALYIHLPFCRRRCFYCDFPIKVVGDGAHAADEYSEAYINLLLREMQAAYRRTAEDGGRAEGGGEGGREGGREG 149
            MRSLRKRRRRGDHSAPRLLLLLCLVLLLLLPSLSFLPFPPCTPSSLLASPPPTRPSAHSDASPPTPPSLPPSPLPRALYIHLPFCRRRCFYCDFPIKVVGDGAHAADEYSEAYINLLLREMQAAYRRTAEDGGRAEGGGEGGREGGREG
Sbjct:    1 MRSLRKRRRRGDHSAPRLLLLLCLVLLLLLPSLSFLPFPPCTPSSLLASPPPTRPSAHSDASPPTPPSLPPSPLPRALYIHLPFCRRRCFYCDFPIKVVGDGAHAADEYSEAYINLLLREMQAAYRRTAEDGGRAEGGGEGGREGGREG 149          
BLAST of EWM20978.1 vs. NCBI_GenBank
Match: gi|873218803|emb|CEM38763.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 89.3521 bits (220), Expect = 6.671e-18
Identity = 48/107 (44.86%), Postives = 64/107 (59.81%), Query Frame = 0
Query:   24 LVLLLLLPSLSFLPFPPCTPSSLLASPP----PTRPSAHSDASPPTPPSLPPSPL--PRALYIHLPFCRRRCFYCDFPIKVVGDGAHAADEYSEAYINLLLREMQAA 124
            L L LLL +   +      PS ++ +PP     +RPSA   A      SL PS    PR++Y+H+PFCRRRC+YCDFPI VVGD A A  + +E+Y  +L REM+A 
Sbjct:    5 LHLRLLLITSRLIASVSALPSFIIPTPPLRHGKSRPSARLGAQQSRLHSLRPSSFTQPRSVYVHIPFCRRRCYYCDFPISVVGDSARAQQQQAESYYGVLKREMEAT 111          
BLAST of EWM20978.1 vs. NCBI_GenBank
Match: gi|922867396|gb|KOO34041.1| (oxygen-independent coproporphyrinogen iii oxidase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 73.9442 bits (180), Expect = 1.140e-12
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 0
Query:   72 SPLPRALYIHLPFCRRRCFYCDFPIKVVGDGAHAADEYSEAYINLLLREM 121
            S LPRA+Y+HLPFCRRRCFYCDFPI  VGD   AAD  +E Y  LL RE+
Sbjct:   24 SVLPRAIYVHLPFCRRRCFYCDFPIVAVGDRPGAADAAAERYCALLDREL 73          
BLAST of EWM20978.1 vs. NCBI_GenBank
Match: gi|551597695|ref|XP_005780930.1| (coproporphyrinogen III oxidase [Emiliania huxleyi CCMP1516] >gi|485633630|gb|EOD28501.1| coproporphyrinogen III oxidase [Emiliania huxleyi CCMP1516])

HSP 1 Score: 73.559 bits (179), Expect = 1.616e-12
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 0
Query:   69 LPPSPLPRALYIHLPFCRRRCFYCDFPIKVVGDGAHAADEYSEAYINLLLREMQAA 124
            +PP+  PRA Y+HLPFCRRRCFYCDFPI VVG    AAD  +E Y  LL RE+ A+
Sbjct:    1 MPPAT-PRAAYVHLPFCRRRCFYCDFPISVVGSKPGAADAAAERYCALLHREIAAS 55          
BLAST of EWM20978.1 vs. NCBI_GenBank
Match: gi|551571030|ref|XP_005771426.1| (coproporphyrinogen III oxidase [Emiliania huxleyi CCMP1516] >gi|485622654|gb|EOD18997.1| coproporphyrinogen III oxidase [Emiliania huxleyi CCMP1516])

HSP 1 Score: 73.559 bits (179), Expect = 1.878e-12
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 0
Query:   69 LPPSPLPRALYIHLPFCRRRCFYCDFPIKVVGDGAHAADEYSEAYINLLLREMQAA 124
            +PP+  PRA Y+HLPFCRRRCFYCDFPI VVG    AAD  +E Y  LL RE+ A+
Sbjct:    1 MPPAT-PRAAYVHLPFCRRRCFYCDFPISVVGSKPGAADAAAERYCALLHREIAAS 55          
BLAST of EWM20978.1 vs. NCBI_GenBank
Match: gi|1027784487|ref|WP_063715848.1| (coproporphyrinogen III oxidase [Leptolyngbya valderiana] >gi|1025914003|gb|OAB62495.1| coproporphyrinogen III oxidase [Leptolyngbya valderiana BDU 20041])

HSP 1 Score: 70.8626 bits (172), Expect = 1.305e-11
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 0
Query:   75 PRALYIHLPFCRRRCFYCDFPIKVVGDGAHAADEYS-EAYINLLLREMQAA 124
            PR+ Y+H+PFCRRRCFYCDFPI VVGD  H  +  +  AY+N L  E+QA 
Sbjct:    6 PRSAYVHVPFCRRRCFYCDFPISVVGDRKHGENSQTVRAYVNWLCAEIQAT 56          
BLAST of EWM20978.1 vs. NCBI_GenBank
Match: gi|1098804353|ref|XP_018808048.1| (PREDICTED: uncharacterized protein LOC108981379 [Juglans regia])

HSP 1 Score: 70.0922 bits (170), Expect = 1.378e-11
Identity = 45/121 (37.19%), Postives = 60/121 (49.59%), Query Frame = 0
Query:   15 APRLLLLLCLVLLLLLPSLSFLPFPPCTPS--------SLLASPPPTRPSAHSDASPPTP-PSLPPSPLPRALYIHLPFCRRRCFYCDFPIKVVGDGAHAADEYSEA--YINLLLREMQAA 124
            A  L+ +  ++   L P  S  P  P TP+        +   SPP  R +A  D     P P LPP+    + YIHLPFCR+RC YCDFPI  +G  ++  D+      YI LL RE+ A 
Sbjct:    4 ALHLITIATMLKSTLAPVFSIFPAKPRTPNFVYQVLTNTFTHSPPTVRQNASPDTLTTAPAPQLPPT----SAYIHLPFCRKRCHYCDFPIVALGSSSNQTDDDPRVLNYIQLLCREINAT 120          
BLAST of EWM20978.1 vs. NCBI_GenBank
Match: gi|501728779|ref|WP_012626977.1| (coproporphyrinogen III oxidase [Cyanothece sp. PCC 7425] >gi|219863547|gb|ACL43886.1| oxygen-independent coproporphyrinogen III oxidase [Cyanothece sp. PCC 7425])

HSP 1 Score: 70.4774 bits (171), Expect = 1.839e-11
Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = 0
Query:   67 PSLPPSPLPRALYIHLPFCRRRCFYCDFPIKVVGDGAHAADEYSEAYINLLLREMQAA 124
            PS PP  LP A YIH+PFCRRRCFYCDFPI VVGD +         YI +L +E+Q A
Sbjct:    3 PSSPPD-LPTAAYIHIPFCRRRCFYCDFPISVVGDRSRGETPAINHYIEVLCQEIQLA 59          
BLAST of EWM20978.1 vs. NCBI_GenBank
Match: gi|518339256|ref|WP_019509463.1| (radical SAM protein [Pleurocapsa sp. PCC 7319])

HSP 1 Score: 69.707 bits (169), Expect = 3.393e-11
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 0
Query:   74 LPRALYIHLPFCRRRCFYCDFPIKVVGD-GAHAADEYSEAYINLLLREMQ 122
            +P A YIH+PFCRRRC+YCDFPI VVGD G ++A    E YI  L++++Q
Sbjct:   25 IPTAAYIHIPFCRRRCYYCDFPISVVGDKGVNSAKSMVEDYIAALIKDIQ 74          
BLAST of EWM20978.1 vs. NCBI_GenBank
Match: gi|676386471|ref|XP_009036514.1| (hypothetical protein AURANDRAFT_37383 [Aureococcus anophagefferens] >gi|323452628|gb|EGB08501.1| hypothetical protein AURANDRAFT_37383 [Aureococcus anophagefferens])

HSP 1 Score: 69.707 bits (169), Expect = 3.406e-11
Identity = 30/62 (48.39%), Postives = 41/62 (66.13%), Query Frame = 0
Query:   68 SLPPSPLPRALYIHLPFCRRRCFYCDFPIKVVGDGAHAADEYSEAYINLLLREMQAAYRRTA 129
            +L  +  PR+LY+HLPFCRRRCFYCDFP+ V G+ +   D  +  Y++LL  EM +   R A
Sbjct:   17 ALQSTAPPRSLYVHLPFCRRRCFYCDFPVVVAGEASATRDRATARYVDLLEHEMASWDARAA 78          
The following BLAST results are available for this feature:
BLAST of EWM20978.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100968|gb|EWM20978.1|2.560e-99100.00oxygen-independent coproporphyrinogen iii oxidase,... [more]
gi|873218803|emb|CEM38763.1|6.671e-1844.86unnamed protein product [Vitrella brassicaformis C... [more]
gi|922867396|gb|KOO34041.1|1.140e-1268.00oxygen-independent coproporphyrinogen iii oxidase ... [more]
gi|551597695|ref|XP_005780930.1|1.616e-1262.50coproporphyrinogen III oxidase [Emiliania huxleyi ... [more]
gi|551571030|ref|XP_005771426.1|1.878e-1262.50coproporphyrinogen III oxidase [Emiliania huxleyi ... [more]
gi|1027784487|ref|WP_063715848.1|1.305e-1158.82coproporphyrinogen III oxidase [Leptolyngbya valde... [more]
gi|1098804353|ref|XP_018808048.1|1.378e-1137.19PREDICTED: uncharacterized protein LOC108981379 [J... [more]
gi|501728779|ref|WP_012626977.1|1.839e-1158.62coproporphyrinogen III oxidase [Cyanothece sp. PCC... [more]
gi|518339256|ref|WP_019509463.1|3.393e-1158.00radical SAM protein [Pleurocapsa sp. PCC 7319][more]
gi|676386471|ref|XP_009036514.1|3.406e-1148.39hypothetical protein AURANDRAFT_37383 [Aureococcus... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9726rna9726Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications