rna9724, rna9724 (mRNA) Nannochloropsis gaditana

Overview
Namerna9724
Unique Namerna9724
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length571
Alignment locationKK037255.1:255114..256599 +

Link to JBrowse

Properties
Property NameValue
ProductEndonuclease/exonuclease/phosphatase
Orig transcript idgnl|cribi|Naga_100539g1.5851.mrna
Orig protein idgnl|cribi|Naga_100539g1.5851
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:255114..256599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100539g1gene9443Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9724rna9724-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20980.1cds9693Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9724 ID=rna9724|Name=rna9724|organism=Nannochloropsis gaditana|type=mRNA|length=571bp
TGCCCGCTTTGGGAAAAAATGCTACTTTACCATCATATTGGCCTTCACGC
ACATCGTACAGAGACACCAATGGAACAACCGTGGCTTTGTCAATGCCTTT
CTTTCCAAGTTGGGCCGCTCTGACCGGCACTAGCAGCACATTCAGAGATA
GCAAGTCAACGGCGGCTTGAGGCAGCCCCCCTGCCCAAGAATTTTTGACA
TTCCCGGGCCCCGATTAAGCATCTTTCAGAGGCATTGGCGGCCCTTGCAC
GTAAAAGTATGTCCGAGGCCGATGCGAACTCGTCAACTCTCTCCACCCGC
CCGTTCAACCTGCTCCGACCCACTTGTGTGGGCCCCGGGGAGCTGGGCAT
CAAGGTCTTTCTCCTCTGCGTCATCACCCTCTCCATGCTCGCACTCCTCT
TCCTCCTCGCTCGCCTCCTCCAGGCCCGCTACCGCGCCCACGGCACGATA
TTCCCCTGGCCGTTGTGTGGCGGCAAGCAGGGTCGTCGTGGGGACGAGGC
CGCTAGCTTCTTCACGGTCTCGGACCTCTTCAACCACCTGGTGCTCCTCC
TGTGCCTCTACGAGATGAGCT
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protein sequence of rna9724

>rna9724-protein ID=rna9724-protein|Name=rna9724|organism=Nannochloropsis gaditana|type=polypeptide|length=393bp
MHRLESCAYTIRTTAKRPGPQSLPPSTSAYRAASLSSLPPPPPSPPDALL
ERGGSRASVSTEEDLGSWTEESGGEEEEEGEETDWKVVRTPSYTDRVLTH
SLPGQGGSLRLLHYDMCDAVELSDHRPVVATYTLQVDGQVRGFGREVPGE
GGGEDGLAVFSFTVGRPRVEFFLPAVLLGEGEGGEMEGKEMHGKEGGRRP
GGRTRLPSPHRVTFLFPLVPEDPVAEERLASALGDAFASGPFAGNPVWPF
SSLFSTAAGRDRAGSEGSSGSGGAGVGDVPGRGGRRGRRMTASARRDVRW
GKKGFPVRFETVASPRFSQHMLVKLADAKGRDLGEAVLPVSVAVAPEEEE
EGHECPNGGRHLENLKAVRLPLTMGGTFQGWLRLELRVTLTPL
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mRNA from alignment at KK037255.1:255114..256599+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9724 ID=rna9724|Name=rna9724|organism=Nannochloropsis gaditana|type=mRNA|length=1486bp|location=Sequence derived from alignment at KK037255.1:255114..256599+ (Nannochloropsis gaditana)
ATGCACAGGCTGGAGAGCTGCGCCTACACCATCCGCACCACTGCCAAGCG
TCCCGGTCcccaatccctccctccctccacctccgcctaCAGagcggcct
ccctctcctccctccctccccctccgccctcccctcccgacgccctcctc
gagaGGGGCGGATCCCGCGCCTCGGTCAGCACCGAGGAGGACCTGGGCTC
GTGGACGGAGGagtcggggggggaggaggaggaggagggggaggagacgg
actGGAAGGTGGTGCGAACGCCTTCCTACACGGACCGCGTCCTCACGCAC
TCCCTTCCGGGCCAGGGGGGctcgctccgcctcctgcactACGACATGTG
CGACGCCGTGGAGCTCTCCGATCATCGCCCGGTGGTGGCTACCTACACGC
TGCAGGTGGATGGGCAGGTGCGGGGctttgggagggaggtgccgggggag
ggcgggggggaggacgggctcgcGGTCTTTTCCTTCACCGTCGGGCGGCC
CCGGGTCGAGTTCTTCCTGCCGGCGGTTctgctgggggagggggaagggg
gggagatggaaggcaaggagatgcacgggaaggaaggtgggaggcggccg
ggcgGAAGGACACGTCTGCCGTCCCCGCACAGGgtcaccttcctcttccc
cttggtGCCGGAGGACcccgtggcggaggagcggctGGCTTCGGCGCTGG
GCGACGCCTTTGCCTCCGGCCCGTTCGCTGGGAACCCGGTctggcccttc
tcctccctcttctccacggCCGCGGGCCGGGACCGGGCGGGAAGCGAGGG
CAGCTCCGGGTCGGGGGGGGCCGGTGTCGGTGATGTCCCTGGAAGGGGCG
GGCGCAGGGGACGCAGGATGACGGCCAGTGCGCGCCGCGATGTCcggtgg
ggaaagaaaggctTCCCCGTGCGCTTTGAGACGGTGGcctcccctcgctt
ctcCCAACACATGCTTGTCAAGCTCGCCGACGCCAAGGGCCGGGACCTGG
GAGAGGCGGTGTTGCCCGTCTCCGTGGCTGTGGcgccggaagaggaggag
gaggggcacgagTGCCCAAATGGAGGGCGACACTTGGAGAACTTGAAAGC
AGTGCGCTTGCCTCTGACGATGGGAGGGACTTTCCAAGGGTGGTTGCGTC
TAGAACTGCGTGTAACATTGACACCCTTATGAGGGACGGCATTCTACGAG
GGATGTGAAAGCACAACCCAAGAATGGGACGATGAAATGACAAGAAATTG
CATATTTATGCCTTCGATATTCTCGTGTTCATCTTTTTTGCGTATGCGAG
GTTTTTGTTACTGAAGATGTGGGCTACGAAGTGCATGAGgcgaaaggaga
gagagctAGATCGAAGGACATGACGGGCAAGTCCGGGAGGAGTCCGCGAC
TTCTGTTGCTTTCAAGTGCCCAAATAGCCAAAATAGTTCAAAATTTATTG
TACAGAAAATGAACGAACAACCCTCAAGATCGATCT
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Coding sequence (CDS) from alignment at KK037255.1:255114..256599+

>rna9724 ID=rna9724|Name=rna9724|organism=Nannochloropsis gaditana|type=CDS|length=1182bp|location=Sequence derived from alignment at KK037255.1:255114..256599+ (Nannochloropsis gaditana)
ATGCACAGGCTGGAGAGCTGCGCCTACACCATCCGCACCACTGCCAAGCG
TCCCGGTCcccaatccctccctccctccacctccgcctaCAGagcggcct
ccctctcctccctccctccccctccgccctcccctcccgacgccctcctc
gagaGGGGCGGATCCCGCGCCTCGGTCAGCACCGAGGAGGACCTGGGCTC
GTGGACGGAGGagtcggggggggaggaggaggaggagggggaggagacgg
actGGAAGGTGGTGCGAACGCCTTCCTACACGGACCGCGTCCTCACGCAC
TCCCTTCCGGGCCAGGGGGGctcgctccgcctcctgcactACGACATGTG
CGACGCCGTGGAGCTCTCCGATCATCGCCCGGTGGTGGCTACCTACACGC
TGCAGGTGGATGGGCAGGTGCGGGGctttgggagggaggtgccgggggag
ggcgggggggaggacgggctcgcGGTCTTTTCCTTCACCGTCGGGCGGCC
CCGGGTCGAGTTCTTCCTGCCGGCGGTTctgctgggggagggggaagggg
gggagatggaaggcaaggagatgcacgggaaggaaggtgggaggcggccg
ggcgGAAGGACACGTCTGCCGTCCCCGCACAGGgtcaccttcctcttccc
cttggtGCCGGAGGACcccgtggcggaggagcggctGGCTTCGGCGCTGG
GCGACGCCTTTGCCTCCGGCCCGTTCGCTGGGAACCCGGTctggcccttc
tcctccctcttctccacggCCGCGGGCCGGGACCGGGCGGGAAGCGAGGG
CAGCTCCGGGTCGGGGGGGGCCGGTGTCGGTGATGTCCCTGGAAGGGGCG
GGCGCAGGGGACGCAGGATGACGGCCAGTGCGCGCCGCGATGTCcggtgg
ggaaagaaaggctTCCCCGTGCGCTTTGAGACGGTGGcctcccctcgctt
ctcCCAACACATGCTTGTCAAGCTCGCCGACGCCAAGGGCCGGGACCTGG
GAGAGGCGGTGTTGCCCGTCTCCGTGGCTGTGGcgccggaagaggaggag
gaggggcacgagTGCCCAAATGGAGGGCGACACTTGGAGAACTTGAAAGC
AGTGCGCTTGCCTCTGACGATGGGAGGGACTTTCCAAGGGTGGTTGCGTC
TAGAACTGCGTGTAACATTGACACCCTTATGA
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Synonyms
Publications