EWM20980.1, cds9693 (CDS) Nannochloropsis gaditana

Overview
NameEWM20980.1
Unique Namecds9693
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:255114..256295 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20980.1
ProductEndonuclease/exonuclease/phosphatase
Orig transcript idgnl|cribi|Naga_100539g1.5851.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:255114..256295 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Homology
BLAST of EWM20980.1 vs. NCBI_GenBank
Match: gi|585100972|gb|EWM20980.1| (Endonuclease/exonuclease/phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 775.007 bits (2000), Expect = 0.000e+0
Identity = 393/393 (100.00%), Postives = 393/393 (100.00%), Query Frame = 0
Query:    1 MHRLESCAYTIRTTAKRPGPQSLPPSTSAYRAASLSSLPPPPPSPPDALLERGGSRASVSTEEDLGSWTEESGGEEEEEGEETDWKVVRTPSYTDRVLTHSLPGQGGSLRLLHYDMCDAVELSDHRPVVATYTLQVDGQVRGFGREVPGEGGGEDGLAVFSFTVGRPRVEFFLPAVLLGEGEGGEMEGKEMHGKEGGRRPGGRTRLPSPHRVTFLFPLVPEDPVAEERLASALGDAFASGPFAGNPVWPFSSLFSTAAGRDRAGSEGSSGSGGAGVGDVPGRGGRRGRRMTASARRDVRWGKKGFPVRFETVASPRFSQHMLVKLADAKGRDLGEAVLPVSVAVAPEEEEEGHECPNGGRHLENLKAVRLPLTMGGTFQGWLRLELRVTLTPL 393
            MHRLESCAYTIRTTAKRPGPQSLPPSTSAYRAASLSSLPPPPPSPPDALLERGGSRASVSTEEDLGSWTEESGGEEEEEGEETDWKVVRTPSYTDRVLTHSLPGQGGSLRLLHYDMCDAVELSDHRPVVATYTLQVDGQVRGFGREVPGEGGGEDGLAVFSFTVGRPRVEFFLPAVLLGEGEGGEMEGKEMHGKEGGRRPGGRTRLPSPHRVTFLFPLVPEDPVAEERLASALGDAFASGPFAGNPVWPFSSLFSTAAGRDRAGSEGSSGSGGAGVGDVPGRGGRRGRRMTASARRDVRWGKKGFPVRFETVASPRFSQHMLVKLADAKGRDLGEAVLPVSVAVAPEEEEEGHECPNGGRHLENLKAVRLPLTMGGTFQGWLRLELRVTLTPL
Sbjct:    1 MHRLESCAYTIRTTAKRPGPQSLPPSTSAYRAASLSSLPPPPPSPPDALLERGGSRASVSTEEDLGSWTEESGGEEEEEGEETDWKVVRTPSYTDRVLTHSLPGQGGSLRLLHYDMCDAVELSDHRPVVATYTLQVDGQVRGFGREVPGEGGGEDGLAVFSFTVGRPRVEFFLPAVLLGEGEGGEMEGKEMHGKEGGRRPGGRTRLPSPHRVTFLFPLVPEDPVAEERLASALGDAFASGPFAGNPVWPFSSLFSTAAGRDRAGSEGSSGSGGAGVGDVPGRGGRRGRRMTASARRDVRWGKKGFPVRFETVASPRFSQHMLVKLADAKGRDLGEAVLPVSVAVAPEEEEEGHECPNGGRHLENLKAVRLPLTMGGTFQGWLRLELRVTLTPL 393          
BLAST of EWM20980.1 vs. NCBI_GenBank
Match: gi|553195981|ref|XP_005856243.1| (hypothetical protein NGA_2103300, partial [Nannochloropsis gaditana CCMP526] >gi|422292816|gb|EKU20118.1| hypothetical protein NGA_2103300, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 162.155 bits (409), Expect = 7.854e-42
Identity = 114/344 (33.14%), Postives = 160/344 (46.51%), Query Frame = 0
Query:   88 VRTPSYTDRVLTHSLPGQGGSLRLLHYDMCDAVELSDHRPVVATYTLQVDGQVRGF-------GREVPGEG-------------GGEDGLAVFSFTVGRPRVEFFLPAVLLGEGEGGEMEGKEMHGKEGGRRPGGRTRLPSPHRVTFLFPLVPEDPVAEERLASALGDAFASGPFAGNPVWPFSSLFSTAAGRDRAGSEGSSGSGGAGVGDVPGRGGRRGRRMTASARRDVRWGKKGFPVRFETVASPRFSQHMLVKLADAKGRDLGEAVLPVSVAVAPEEE-EEGHECPNG----------------GRH-LENLKAVRLPLTMGGTFQGWLRLELRVTLTPL 393
            +RTPSYTDR+LTHS+PG+G +LR  HYDM DAV LSDHRPV A +TL VD   RGF          VP EG               ++ LA+F+  +  P V                        K G       +    PH  T LFPLV EDP+A ERLAS+LG+    G   G     FSSL         +  E SS                                   FPVR +T+ASPRFS+H+L+K+++ +G+++G+ ++P+++ ++ +E  +E H  P+                 G H  E+ +   LPLT GG+ +GW+ L LR  + P+
Sbjct:  163 LRTPSYTDRILTHSMPGKGANLRWRHYDMMDAVPLSDHRPVCAHFTLFVDANCRGFQTFSTPPHSVVPPEGKFSQVDEPLAMQTANKEELALFTVVLSHPHVTL----------------------KGGSNILSNLSAATIPHEATILFPLVSEDPLAAERLASSLGEVIPGGTSHGQS--SFSSL---------SHHEWSS-----------------------------------FPVRLKTLASPRFSEHLLLKVSNDRGKEIGQTIIPLALGISSKEVPQETHLYPSSYANSSLCSFRVDEIVQGLHGNEDNRRFSLPLTKGGSLRGWITLTLRTKIKPI 438          
BLAST of EWM20980.1 vs. NCBI_GenBank
Match: gi|585103426|gb|EWM22803.1| (inositol polyphosphate phosphatase-like isoform cra_a [Nannochloropsis gaditana])

HSP 1 Score: 162.54 bits (410), Expect = 4.605e-40
Identity = 127/343 (37.03%), Postives = 172/343 (50.15%), Query Frame = 0
Query:   88 VRTPSYTDRVLTHSLPGQGGSLRLLHYDMCDAVELSDHRPVVATYTLQVDGQVRGF----------------GREVPGEGGGEDGLAVFSFTVGRPRVE-----FFLPAVLLGEGEGGEMEGKEMHGKEGGRRPGGRTRLP---SPHRVTFLFPLVPEDPVAEERLASALGDAF-ASGPFAGNPVWPFSSLFSTAAGRDRAG--SEGSSG----SGGAGVGDVPG----RGGRRGRRMTASARRDVRWGKKGFPVRFETVASPRFSQHMLVKLADAKGRDLGEAVLPVSVAVAP--EEEEEGHECPNGGRHLENLKAVRLPLTMGGTFQGWLRLELRVTLTPL 393
            +RTPSYTDR+LTHSLPG+   LR  HYDM D V LSDHRPV A   L VD +VRGF                G     +    D L +F   +GRPR+E       LPA+ +        EG +   K   R  G  + L     P+ VT LFPLV EDP+ E+R   +LG+A  A G  +       + L ++  G  + G  S  SSG    SGG     V G    +GG+ G  +     + V W  + FP     VAS RFS+H+LVK+ D++ +DLG+AV+P+++  +P  +E       P      E    VR+ L+ GG F+G L L+L VT+  L
Sbjct: 1151 LRTPSYTDRILTHSLPGKSHYLRWRHYDMADNVALSDHRPVCAALDLTVDRRVRGFQVVSPPPSLPLSLPSYGSRETDKSSLADDLVLFHIYLGRPRLEGRLASSLLPALGVSRDPASAGEGNKT-SKNKSRFGGASSTLKWAGGPYEVTVLFPLVSEDPLVEQRQLCSLGEAIPAFGGSSRGSQGNTADLQNSRTGLSQQGTCSRSSSGAPLHSGGKSQSPVEGSLSHQGGKGGEEVPMGEVKHVPW--ESFPQIMHVVASRRFSEHVLVKIQDSRLQDLGQAVIPIALGFSPGAKEFAASSIIPPFPVMKER---VRVALSSGGVFKGMLTLDLSVTVQAL 1487          
BLAST of EWM20980.1 vs. NCBI_GenBank
Match: gi|585103427|gb|EWM22804.1| (inositol polyphosphate phosphatase-like isoform cra_a [Nannochloropsis gaditana])

HSP 1 Score: 161.77 bits (408), Expect = 7.382e-40
Identity = 127/343 (37.03%), Postives = 172/343 (50.15%), Query Frame = 0
Query:   88 VRTPSYTDRVLTHSLPGQGGSLRLLHYDMCDAVELSDHRPVVATYTLQVDGQVRGF----------------GREVPGEGGGEDGLAVFSFTVGRPRVE-----FFLPAVLLGEGEGGEMEGKEMHGKEGGRRPGGRTRLP---SPHRVTFLFPLVPEDPVAEERLASALGDAF-ASGPFAGNPVWPFSSLFSTAAGRDRAG--SEGSSG----SGGAGVGDVPG----RGGRRGRRMTASARRDVRWGKKGFPVRFETVASPRFSQHMLVKLADAKGRDLGEAVLPVSVAVAP--EEEEEGHECPNGGRHLENLKAVRLPLTMGGTFQGWLRLELRVTLTPL 393
            +RTPSYTDR+LTHSLPG+   LR  HYDM D V LSDHRPV A   L VD +VRGF                G     +    D L +F   +GRPR+E       LPA+ +        EG +   K   R  G  + L     P+ VT LFPLV EDP+ E+R   +LG+A  A G  +       + L ++  G  + G  S  SSG    SGG     V G    +GG+ G  +     + V W  + FP     VAS RFS+H+LVK+ D++ +DLG+AV+P+++  +P  +E       P      E    VR+ L+ GG F+G L L+L VT+  L
Sbjct: 1083 LRTPSYTDRILTHSLPGKSHYLRWRHYDMADNVALSDHRPVCAALDLTVDRRVRGFQVVSPPPSLPLSLPSYGSRETDKSSLADDLVLFHIYLGRPRLEGRLASSLLPALGVSRDPASAGEGNKT-SKNKSRFGGASSTLKWAGGPYEVTVLFPLVSEDPLVEQRQLCSLGEAIPAFGGSSRGSQGNTADLQNSRTGLSQQGTCSRSSSGAPLHSGGKSQSPVEGSLSHQGGKGGEEVPMGEVKHVPW--ESFPQIMHVVASRRFSEHVLVKIQDSRLQDLGQAVIPIALGFSPGAKEFAASSIIPPFPVMKER---VRVALSSGGVFKGMLTLDLSVTVQAL 1419          
BLAST of EWM20980.1 vs. NCBI_GenBank
Match: gi|585112176|gb|EWM29605.1| (72 kda inositol polyphosphate 5-phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 161.384 bits (407), Expect = 9.860e-40
Identity = 114/344 (33.14%), Postives = 160/344 (46.51%), Query Frame = 0
Query:   88 VRTPSYTDRVLTHSLPGQGGSLRLLHYDMCDAVELSDHRPVVATYTLQVDGQVRGF-------GREVPGEG-------------GGEDGLAVFSFTVGRPRVEFFLPAVLLGEGEGGEMEGKEMHGKEGGRRPGGRTRLPSPHRVTFLFPLVPEDPVAEERLASALGDAFASGPFAGNPVWPFSSLFSTAAGRDRAGSEGSSGSGGAGVGDVPGRGGRRGRRMTASARRDVRWGKKGFPVRFETVASPRFSQHMLVKLADAKGRDLGEAVLPVSVAVAPEEE-EEGHECPNG----------------GRH-LENLKAVRLPLTMGGTFQGWLRLELRVTLTPL 393
            +RTPSYTDR+LTHS+PG+G +LR  HYDM DAV LSDHRPV A +TL VD   RGF          VP EG               ++ LA+F+  +  P V                        K G       +    PH  T LFPLV EDP+A ERLAS+LG+    G   G     FSSL         +  E SS                                   FPVR +T+ASPRFS+H+L+K+++ +G+++G+ ++P+++ ++ +E  +E H  P+                 G H  E+ +   LPLT GG+ +GW+ L LR  + P+
Sbjct: 1056 LRTPSYTDRILTHSMPGKGANLRWRHYDMMDAVPLSDHRPVCAHFTLFVDANCRGFQTFSTPPHSVVPPEGKFSQVDEPLAMQTANKEELALFTVVLSHPHVTL----------------------KGGSNILSNLSAATIPHEATILFPLVSEDPLAAERLASSLGEVIPGGTSHGQS--SFSSL---------SHHEWSS-----------------------------------FPVRLKTLASPRFSEHLLLKVSNDRGKEIGQTIIPLALGISSKEVPQETHLYPSSYANSSLCSFRVDEIVQGLHGNEDNRRFSLPLTKGGSLRGWITLTLRTKIKPI 1331          
BLAST of EWM20980.1 vs. NCBI_GenBank
Match: gi|585102564|gb|EWM22143.1| (endonuclease exonuclease phosphatase family protein [Nannochloropsis gaditana])

HSP 1 Score: 144.821 bits (364), Expect = 4.527e-34
Identity = 125/395 (31.65%), Postives = 166/395 (42.03%), Query Frame = 0
Query:   89 RTPSYTDRVLTHSLPGQGGSLRLLHYDMCDAVELSDHRPVVATYTLQVDGQVRGF----------------------------GREVPGEG----------------GGEDGLAVFSFTVGRPRVEFFLPAVLLGEGEGGEMEGKEMHGKEGG-RRPGGRTR-----------LPSPHRVTFLFPLVPEDPVAEERLASALGDAFASGPFAGNPVWPFSSLFSTAAGRDRAGSEGSSGSGGAGV-----GDVPGRGGRRGRR--MTASARRDVRWGKKGFPVRFETVASPRFSQHMLVKLADAKGRDLGEAVLPVSVAV----APEEEEEGHECPNGGR-----------------------HLENLKAVRLPLTMGGTFQGWLRLELRVTLTPL 393
            RTPSYTDR+LTHS+P +    R L YD  D V  SDHRPV A + L+ D +VRGF                                P EG                G    LAVF+ ++ RP +    P       +  ++E K   G  GG RRP G  R           +  P RV  LFP+V EDP A ER AS LG A        N   P +     A+     G++G       GV        P  G +  RR    AS+ R V W  + FPVRF+ VAS RFS+HML+K++D++  DLGEA++P+ +A+         EE H  P                           H +     R  L+ GG F+G+L ++L+V   P 
Sbjct: 1119 RTPSYTDRILTHSMPAKASQFRWLLYDSADLVGFSDHRPVAAAFELRADERVRGFQTLASVSSSAVAPDGPRLSSISHAPPPSSNVEPQEGNMGPVPKPLSNRTSSQGVWKDLAVFTISMSRPSLRLNSPT-----PQRKKVEHKAFFGGTGGKRRPEGLRRRGSIMVLPEMGVTKPSRVQILFPIVSEDPFAFERKASQLGAALPGLGLEVNE--PGNRENKGASMLKLGGTQGHEQQPPGGVEGPHRASSPSSGSQERRREDAFASSLRTVPW--EDFPVRFQVVASLRFSEHMLLKISDSRNHDLGEAIIPIRIALPHVAGAFSHEERHAMPQSAENEGPFPHPTEIFDVGAGKCHSSVHSKRNHRYRFALSAGGEFKGFLSVDLKVRHRPF 1504          
BLAST of EWM20980.1 vs. NCBI_GenBank
Match: gi|553183523|ref|XP_005853914.1| (hypothetical protein NGA_0460910 [Nannochloropsis gaditana CCMP526] >gi|422295150|gb|EKU22449.1| hypothetical protein NGA_0460910 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 88.5817 bits (218), Expect = 6.159e-16
Identity = 76/216 (35.19%), Postives = 110/216 (50.93%), Query Frame = 0
Query:  194 KEGGRRPGGRTRLP---SPHRVTFLFPLVPEDPVAEERLASALGDAF-ASGPFAGNPVWPFSSLFSTAAGRDRAG--SEGSSG----SGGAGVGDVPG----RGGRRGRRMTASARRDVRWGKKGFPVRFETVASPRFSQHMLVKLADAKGRDLGEAVLPVSVAVAPEEEE--EGHECPNGGRHLENLKAVRLPLTMGGTFQGWLRLELRVTLTPL 393
            K   R PG  + L     P+ VT LFPLV EDP+ E+R   +LG+A  A G  +       + L ++  G  + G  S  SSG    SGG     V G    +GG+ G  +     + V W  + FP     VAS RFS+H+LVK+ D++ +DLG+AV+P+++  +P  +E       P      E    VR+ L+ GG F+G L L+L VT+  L
Sbjct:   62 KNKSRFPGASSTLKWAGGPYEVTVLFPLVSEDPLVEQRQLCSLGEAIPAFGGSSRGSQGNTADLQNSRTGLSQQGTCSRSSSGAPFHSGGKSQSPVEGSLSHQGGKGGEEVPMGEVKHVPW--ESFPQIMHVVASRRFSEHVLVKIQDSRLQDLGQAVIPIALGFSPGAKEFAASSIIPPFPVMKER---VRVALSSGGVFKGMLTLDLSVTVQAL 272          
BLAST of EWM20980.1 vs. NCBI_GenBank
Match: gi|585110784|gb|EWM28400.1| (putative inositol polyphosphate-5-phosphatase inp51p [Nannochloropsis gaditana])

HSP 1 Score: 67.0106 bits (162), Expect = 2.281e-8
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 0
Query:   89 RTPSYTDRVLTHSLPGQGGSLRLLHYDMCDAVELSDHRPVVATYTLQVDGQVRGFGREVPGEGG 152
            R PSYTDR+L HSL    GSL L+ Y++CDA+  SDHRPV A + L+++ +V GF R +P   G
Sbjct:   52 RVPSYTDRILFHSLADVRGSLSLVAYELCDALTGSDHRPVSAAFELRLNKKVIGF-RTMPSLKG 114          
BLAST of EWM20980.1 vs. NCBI_GenBank
Match: gi|553184011|ref|XP_005854011.1| (inositol polyphosphate 5-phosphatase ocrl-1 [Nannochloropsis gaditana CCMP526] >gi|422295049|gb|EKU22348.1| inositol polyphosphate 5-phosphatase ocrl-1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 63.5438 bits (153), Expect = 2.905e-7
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 0
Query:   89 RTPSYTDRVLTHSLPGQGGSLRLLHYDMCDAVELSDHRPVVATYTLQVDGQVRGFG 144
            R PSYTDR+L H+LP  G  + +  YDMCDA+  SDHRPVV    L+++  + GF 
Sbjct:  458 RPPSYTDRILFHALPDVGPRVFIQGYDMCDAITGSDHRPVVCRVDLKLNTDIIGFN 513          
BLAST of EWM20980.1 vs. NCBI_GenBank
Match: gi|585109654|gb|EWM27419.1| (type ii inositol- -trisphosphate 5-phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 63.1586 bits (152), Expect = 4.853e-7
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 0
Query:   89 RTPSYTDRVLTHSLPGQGGSLRLLHYDMCDAVELSDHRPVVATYTLQVDGQVRGFG 144
            R PSYTDR+L H+LP  G  + +  YDMCDA+  SDHRPVV    L+++  + GF 
Sbjct:  968 RPPSYTDRILFHALPDVGPRVFIQGYDMCDAITGSDHRPVVCRVDLKLNTDIIGFN 1023          
The following BLAST results are available for this feature:
BLAST of EWM20980.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100972|gb|EWM20980.1|0.000e+0100.00Endonuclease/exonuclease/phosphatase [Nannochlorop... [more]
gi|553195981|ref|XP_005856243.1|7.854e-4233.14hypothetical protein NGA_2103300, partial [Nannoch... [more]
gi|585103426|gb|EWM22803.1|4.605e-4037.03inositol polyphosphate phosphatase-like isoform cr... [more]
gi|585103427|gb|EWM22804.1|7.382e-4037.03inositol polyphosphate phosphatase-like isoform cr... [more]
gi|585112176|gb|EWM29605.1|9.860e-4033.1472 kda inositol polyphosphate 5-phosphatase [Nanno... [more]
gi|585102564|gb|EWM22143.1|4.527e-3431.65endonuclease exonuclease phosphatase family protei... [more]
gi|553183523|ref|XP_005853914.1|6.159e-1635.19hypothetical protein NGA_0460910 [Nannochloropsis ... [more]
gi|585110784|gb|EWM28400.1|2.281e-851.56putative inositol polyphosphate-5-phosphatase inp5... [more]
gi|553184011|ref|XP_005854011.1|2.905e-750.00inositol polyphosphate 5-phosphatase ocrl-1 [Nanno... [more]
gi|585109654|gb|EWM27419.1|4.853e-750.00type ii inositol- -trisphosphate 5-phosphatase [Na... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9724rna9724Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications