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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100114g20.2486.mrna |
| Orig protein id | gnl|cribi|Naga_100114g20.2486 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:866225..868549 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna972 ID=rna972|Name=rna972|organism=Nannochloropsis gaditana|type=mRNA|length=2960bp
GAAGACATGGAAGGTTAACAAGGGACTTTTTGATCAAGGCGACTCTTGTT
TGGAGGAATTTTGTTGCCAGACATGCTGAGTCGTTGATTGTGATCGTGCT
ATTGAAAGAGGGAGTACCATGCACTTTTGTGAGCAACTGGTGATCAACGC
TGACATGGCATTGCGGGATAGGAGTCAGGAGAAAGGGGGTAAACCACATT
GTATCTCGAAGTTTTTGTATGATACTTTTGCAAGTGGGTGTATAAGATTG
GTTATGAGTCCAGCCAGACAAAAGATGAATGCGGCTGCAGTGTTGACTAT
AAGTTCAAGTGTGAGAACGCAGCACGAGCCAGGCGAAAAAAAAGATTTGA
ACAATGCGAGTTCTTTCGATGATCGTTCACTTCTTTCGATCGATTAGAGT
ATAAAATTCATGTTGTTGTTGTGTGTTGAATGGATGAGAGGACTGAGTGT
GCTCGACCTGAGCCACAAGTGAGAGCGATGGTACGTGCCGTGAGCAAGAG
GTTGCTTTTCTGCCGTGTCTTCCAACCAGGTCCTTCGGTCGCGTAACGGA
AGGGAATCCGCATGGTACGCGCATACAACTGAATTTTTATGGCCCCCAAA
GTGGCGAATTTTAAGCCACGGGACGTGGTAGTGCGCTGTCTGCGGCGTGG
ATTGCTTGGATGGAGTGCTCCCAGCAGCGAGCGAGAGGCGGCGAGGCGAG
GCTGTGTACGACTTGAGAGGCGGTGGTTTGCATTACTTATTGCCTCGCTT
GAGTTGGTGAAGGGTTAGATTACGGCAGGACAAAATTTTCAGAGATAATT
TATGCTTTCGCGGCGATTCGAGTGCTTTTCTGGAGCTGCCCTCTGTCCTA
CTGGTCAAAGCCAAAGCATGCGCAAGGCGTCGCGCGTAGCCCCATTGCCT
CGTATCATACCACTCCACAACATTGCAGACTTTTCTGTTCATCGTCTTTT
TATTCCTTCATGCCTGCGTTTTGTCGCTGCCGCTTGCTCTGTGTGTAGAT
GTTATCACCACCCGCTCGTAGTGCAGCTTATCCGTCCTCACACTTAAACA
CAGTCGTTGAGCGACTAGATTTCATATTGACTCCCTTCTGGTTAATTTAC
GACAGGTTACCCTGTAATCTGTTCGGTTTGTGGCGGAGGGGCTTCATTAT
CCTCTCCCTGTGACTCCTGTTGAACTGATACGTAAACGAAAGAGATAAGA
GATATGCTGGCAAACGTCAGGCGCAGCATATGGAGTTTGCGTGGTCAGGT
CGGCATCATTTCGTCCAGGTCGAGCGGAGCAGAAGTAGGCATCGTGGCTT
TCCGTTATTGGAGCTCTCAAAGAGAAAGACGTCATGAGCATTGGTCCACT
TTGATGACCTATTGGTTTGGCGGAGCACTTGCAGTTGGAGCGCTGGGTTC
CATGGATGTTGCTCAGACTGAGGCAGAAGCAGCGCCCAAGGTGGATTCTC
CGGCGAGTACAGAGGCGATGGCCGCGTCGGCGCGGTCGGGAAAGGTTGTG
AAAACAAGTGGAATGAAACTCTTTAGCGGCAATGCCAACACCAGGTTGGC
AGCCGAGATCGCCGGGCAACTGGGCATGAACCTGGGAAAAATTACGGTGT
CACGCTTCGCGGACGGGGAAGTCAACGTGATGGTGCATGAGAACGTGCGC
GGGAAAGACGTGTACATTGTCCAGCCTACATGCTCGCCTGTGAACGAAAA
TCTGATGGAGCTCTTGCTCATGGTTTCCACCATGCGCCGGTCCTCAGCTC
GGCGGATCACTGCGGTCATCCCTTACTACGGCTATGCCCGCCAAGACAGG
AAGATGCAGGCGCGAGTGCCTATCTCCGCAGCAGATGTCGCCCGGCTGCT
TGAGGCCATGGGGGTGGACCGAGTTGTGGCTGTAGATTTGCACTGCGGGC
AGATTCAGGGGTTCTTCGGGCCGCGCGTGCCGGTCGACAATTTGGATGGG
GGGACGGTAGGGGTCTCGTACTTCGGTGACAAGGACTTGCACAATCCTGT
CATCGTGTCGCCGGACGCAGGCGGTGTATACCGCGCCAAAAAGTTTCGCG
AAGGCCTTGCACAGAAGTACGATGTGGACGCCGGCCTAGCGATGATTATC
AAGCAGCGAGCGCGGGCGAACGAGGTGGACCGCATGGACCTGGTTGGCTC
CGTGGTTGACTCGGACGTAGTCATAGTGGATGATATGATTGACACCGCTG
GGACCCTGGCCAAAGCCGCCGACGTGTTGGTCGCCAATGGTGCCCGCCGT
GTCTACTCCTTCGCATCCCATGGGCTCTTCTCTGGCCCTGCTAATGAGCG
GATCTCCCAGTCTAAATTGGAGGAGGTGGTGGTGCTCAACACTATTCCCC
TCACACCCGCGCACGAAGCAAATGCCAAAATCGTACAGCTGTCGGTGGCT
CCGCTCATCGCTCAGGCTATCTATAATATTCATCAGAAAAAGTCGATTTC
CGCTCTATTCAAATGAGATAGCAGCAAGTTGAGACAGGAGAAGGCAATGC
ACTTACGACCTGGACTGAAATTAATTGCCCATTGTTGACTGTTGCTTGTC
ACGATGTGCCTTTTGCGTCGTGCACTTTCTGCTTTAGGAAGTACCGTGAG
ACGTGAGCTGCATAACATGGGATGTGTTCCGTGTGGGCACACGGCATTTG
AAATCGCGGTATGCGTGGAAAGGGAAGACAAATATATATGAATACACATA
GGTAATGATCCAATTTTGCGTGGCCGAAGCCGCTGGAACTGGAAAATTTG
ATATAGTAATTCTTGACTTCACTGGAAATGCATGACATCGCATTTCGTAT
TTCTTAACGAAAGATTGTCACGGACTCTTTGAGATGAGGAAAGAATATTT
TGAAAGCTTAATTTTCGAGTTTTCATTCTTTCCCAGAAGTTCTGTATCTA
ACATGAGGATACAGAAATTGAAATTTCTCAACATCTTTACCCGCTCGACT
TCGCCTTTGC back to topprotein sequence of rna972 >rna972-protein ID=rna972-protein|Name=rna972|organism=Nannochloropsis gaditana|type=polypeptide|length=523bp
MQRPHHTCLAGRGWTWTERALTSVAPAGSDLPPCWPLGTRFRPSPGVRLK
DGEDKLGSKSVIVSKKMSIGARQSVWHRHFSVLWGFMIFTVLTLLQQGAW
GFLAPPRTTLKDSCAIRAGKSLVMMSAEGMGKVAVVVGYEDGTAQLIAAK
MATTLEGVRVRAILETGTSDPVPAMLLPPNVQVTRKSLDSIGSDDLAGAS
VALVSLDKGPKEEAGADPSNYLPLPTILSNIGPLTKVVIAAYANDTAAAG
RVGGGLNLNIFARGVDPKEVVEAARSSGPGSAVIVLAQHGRLFGPPALAT
SPNAAVQVLPFVGGPLQKPVLEESFAKQNILLALGSSLSRNRDAATMRSA
LAESMIRASGLIDSIGDFSVVSLEGQAPSAGDWEQLMAGLDTRGGVTVFE
KVLAASERVDLNVLQEWLVNDFGAGLSTLAISRVLNSPKPSIVINTAVGS
DIVWQFVGKDLKVQGSGRWSIQLDSEARTIKILRENAEGKMLTEALPGEE
ELLQRFSAAINRLVYSRKLSKRR back to topmRNA from alignment at CM002456.1:866225..868549- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna972 ID=rna972|Name=rna972|organism=Nannochloropsis gaditana|type=mRNA|length=2325bp|location=Sequence derived from alignment at CM002456.1:866225..868549- (Nannochloropsis gaditana)
CCAGTCCAGCCCCGGGGAAGCCTGCGGACGAATCCACTTGCGGTAGCCGC
CGCGTTGACGCGAATAGCCTGCGAAAGCATCTCGTCGCGGATTGACGACT
CTTTAAAACGTTGATCTGTGATTCAACAGGATATGTGCTCCAATGATATA
AAGGATGGTGGTTTTTATTTGCGCGATGTGGACAGCAGAAGAGGAGAGCC
TTGAGGTGCACTCTCATCCTCCTCGCCTCCATGTCCGGCTCCCTCCTTAC
ACGCACTTGCCCGGCCACCACCGCGCACGGGTGAGGCAGCAGTGGTTGGC
GCAGGTGTCTCAGGCTCTCTTCGCTGCCTGACCACGCATGCAACGCCCGC
ATCACACCTGCCTGGCGGGGCGGGGCTGGACATGGACGGAGAGAGCGCTC
ACCTCCGTCGCCCCCGCAGGAAGCGACCTCCCCCCTTGCTGGCCCCTGGG
AACCCGCTTTAGACCGTCTCCCGGCGTCCGTCTCAAGGTATCGCGTACCG
CGGGGTGTCTCCTTTTAAGCCCCAATCAGTGAAAGTTGCATGGAAGCGCG
TCGGCGCACGGACATGTCCTTTGTAACACTCGCATGGATGCTGACTGACT
ACTTTCGAAGCATTTCTGGTATCAAACTCAAGTCAACAATGCACGATACA
GGACGGGGAGGACAAGCTGGGATCCAAATCAGTGATAGTGAGTAAAAAAA
TGTCGATAGGCGCAAGACAAAGTGTATGGCACAGGCATTTCTCAGTATTG
TGGGGCTTTATGATCTTCACGGTTCTGACTTTGCTGCAACAAGGAGCATG
GGGCTTTCTAGCTCCACCACGGACAACGCTGAAGGATTCATGTGCAATAA
GGGCAGGGAAAAGCTTAGTGATGATGTCAGCGGAGGGCATGGGAAAAGTA
GCTGTCGTGGTGGGTTATGAGGACGGGACAGCTCAGCTGATTGCGGCGAA
GATGGCAACCACACTTGAAGGCGTCAGAGTGCGCGCCATACTCGAAACAG
GGACGAGCGACCCCGTCCCAGCTATGCTGCTGCCCCCAAACGTACAAGTC
ACACGCAAAAGCCTGGACTCTATTGGCTCCGATGATTTGGCTGGAGCCTC
GGTTGCCCTCGTCAGCCTTGATAAGGGTCCGAAGGAGGAGGCAGGCGCAG
ACCCTAGCAACTACCTGCCGCTACCTACAATACTGTCGAACATCGGGCCG
CTGACCAAGGTTGTAATAGCCGCGTACGCCAATGACACTGCAGCAGCGGG
AAGGGTTGGAGGGGGGTTGAATCTGAACATCTTCGCGAGAGGCGTGGACC
CGAAGGAGGTCGTGGAGGCCGCGAGAAGTTCCGGCCCCGGGTCGGCTGTC
ATTGTCTTGGCACAGCACGGGCGTCTATTCGGACCCCCCGCTCTTGCAAC
GAGTCCCAATGCCGCCGTACAAGTCTTGCCTTTCGTGGGAGGGCCGCTGC
AAAAACCTGTGCTGGAGGAGTCGTTCGCGAAGCAAAACATTTTGCTGGCT
CTGGGAAGCTCTCTCTCACGAAATCGAGACGCGGCAACCATGCGATCGGC
CCTTGCTGAGAGCATGATTCGTGCATCGGGGCTTATTGATAGCATCGGAG
ATTTTTCTGTGGTGAGTCTGGAGGGACAAGCGCCAAGCGCGGGCGACTGG
GAGCAACTGATGGCGGGTCTGGACACGCGAGGGGGCGTGACTGTGTTCGA
GAAGGTCCTGGCTGCCAGCGAGCGGGTGGATTTGAATGTGTTGCAGGAGT
GGCTGGTGAATGATTTCGGTGCGGGCCTGTCGACGCTCGCCATCTCTCGC
GTGCTCAACTCGCCCAAGCCCTCCATTGTAATCAACACGGCCGTCGGCAG
CGACATCGTCTGGCAGTTCGTCGGGAAAGACCTGAAGGTGCAGGGCTCTG
GTCGGTGGTCCATTCAGTTGGACAGCGAGGCCAGAACGATCAAAATCTTG
CGAGAAAATGCCGAGGGGAAAATGTTGACTGAGGCTCTGCCGGGAGAGGA
GGAATTGCTGCAGCGCTTTTCAGCAGCCATCAATCGGTTGGTCTATTCCC
GCAAGCTTTCGAAACGGAGATGATGCGTGAAACCAGAATCTTTAAAGCAT
ACACTTTTGAGGTCTTGCTGGGCTGAAAGCCTGGCAAACGGCCATCCCCC
GTGCGCTATAAGAACTAAGAGACCTTCGAGTCCTGTTGACCCCAACACTG
CTCTGTATGCCCGCGAAGGCAAGATAAAATGCTGTTGTTTTTTCCCATTT
TTCTTTTTTTTAAAACTCTAATTTGTTATGGTTAAGACGACACTCTGTGA
TGCTTTTGCGCTGTCAATGTTTCCC back to topCoding sequence (CDS) from alignment at CM002456.1:866225..868549- >rna972 ID=rna972|Name=rna972|organism=Nannochloropsis gaditana|type=CDS|length=3144bp|location=Sequence derived from alignment at CM002456.1:866225..868549- (Nannochloropsis gaditana)
GACGGGGAGGACAAGCTGGGATCCAAATCAGTGATAGTGAGTAAAAAAAT
GTCGATAGGCGCAAGACAAAGTGTATGGCACAGGCATTTCTCAGTATTGT
GGGGCTTTATGATCTTCACGGTTCTGACTTTGCTGCAACAAGGAGCATGG
GGCTTTCTAGCTCCACCACGGACAACGCTGAAGGATTCATGTGCAATAAG
GGCAGGGAAAAGCTTAGTGATGATGTCAGCGGAGGGCATGGGAAAAGTAG
CTGTCGTGGTGGGTTATGAGGACGGGACAGCTCAGCTGATTGCGGCGAAG
ATGGCAACCACACTTGAAGGCGTCAGAGTGCGCGCCATACTCGAAACAGG
GACGAGCGACCCCGTCCCAGCTATGCTGCTGCCCCCAAACGTACAAGTCA
CACGCAAAAGCCTGGACTCTATTGGCTCCGATGATTTGGCTGGAGCCTCG
GTTGCCCTCGTCAGCCTTGATAAGGGTCCGAAGGAGGAGGCAGGCGCAGA
CCCTAGCAACTACCTGCCGCTACCTACAATACTGTCGAACATCGGGCCGC
TGACCAAGGTTGTAATAGCCGCGTACGCCAATGACACTGCAGCAGCGGGA
AGGGTTGGAGGGGGGTTGAATCTGAACATCTTCGCGAGAGGCGTGGACCC
GAAGGAGGTCGTGGAGGCCGCGAGAAGTTCCGGCCCCGGGTCGGCTGTCA
TTGTCTTGGCACAGCACGGGCGTCTATTCGGACCCCCCGCTCTTGCAACG
AGTCCCAATGCCGCCGTACAAGTCTTGCCTTTCGTGGGAGGGCCGCTGCA
AAAACCTGTGCTGGAGGAGTCGTTCGCGAAGCAAAACATTTTGCTGGCTC
TGGGAAGCTCTCTCTCACGAAATCGAGACGCGGCAACCATGCGATCGGCC
CTTGCTGAGAGCATGATTCGTGCATCGGGGCTTATTGATAGCATCGGAGA
TTTTTCTGTGGTGAGTCTGGAGGGACAAGCGCCAAGCGCGGGCGACTGGG
AGCAACTGATGGCGGGTCTGGACACGCGAGGGGGCGTGACTGTGTTCGAG
AAGGTCCTGGCTGCCAGCGAGCGGGTGGATTTGAATGTGTTGCAGGAGTG
GCTGGTGAATGATTTCGGTGCGGGCCTGTCGACGCTCGCCATCTCTCGCG
TGCTCAACTCGCCCAAGCCCTCCATTGTAATCAACACGGCCGTCGGCAGC
GACATCGTCTGGCAGTTCGTCGGGAAAGACCTGAAGGTGCAGGGCTCTGG
TCGGTGGTCCATTCAGTTGGACAGCGAGGCCAGAACGATCAAAATCTTGC
GAGAAAATGCCGAGGGGAAAATGTTGACTGAGGCTCTGCCGGGAGAGGAG
GAATTGCTGCAGCGCTTTTCAGCAGCCATCAATCGGTTGGTCTATTCCCG
CAAGCTTTCGAAACGGAGATGAATGCAACGCCCGCATCACACCTGCCTGG
CGGGGCGGGGCTGGACATGGACGGAGAGAGCGCTCACCTCCGTCGCCCCC
GCAGGAAGCGACCTCCCCCCTTGCTGGCCCCTGGGAACCCGCTTTAGACC
GTCTCCCGGCGTCCGTCTCAAGGACGGGGAGGACAAGCTGGGATCCAAAT
CAGTGATAGTGAGTAAAAAAATGTCGATAGGCGCAAGACAAAGTGTATGG
CACAGGCATTTCTCAGTATTGTGGGGCTTTATGATCTTCACGGTTCTGAC
TTTGCTGCAACAAGGAGCATGGGGCTTTCTAGCTCCACCACGGACAACGC
TGAAGGATTCATGTGCAATAAGGGCAGGGAAAAGCTTAGTGATGATGTCA
GCGGAGGGCATGGGAAAAGTAGCTGTCGTGGTGGGTTATGAGGACGGGAC
AGCTCAGCTGATTGCGGCGAAGATGGCAACCACACTTGAAGGCGTCAGAG
TGCGCGCCATACTCGAAACAGGGACGAGCGACCCCGTCCCAGCTATGCTG
CTGCCCCCAAACGTACAAGTCACACGCAAAAGCCTGGACTCTATTGGCTC
CGATGATTTGGCTGGAGCCTCGGTTGCCCTCGTCAGCCTTGATAAGGGTC
CGAAGGAGGAGGCAGGCGCAGACCCTAGCAACTACCTGCCGCTACCTACA
ATACTGTCGAACATCGGGCCGCTGACCAAGGTTGTAATAGCCGCGTACGC
CAATGACACTGCAGCAGCGGGAAGGGTTGGAGGGGGGTTGAATCTGAACA
TCTTCGCGAGAGGCGTGGACCCGAAGGAGGTCGTGGAGGCCGCGAGAAGT
TCCGGCCCCGGGTCGGCTGTCATTGTCTTGGCACAGCACGGGCGTCTATT
CGGACCCCCCGCTCTTGCAACGAGTCCCAATGCCGCCGTACAAGTCTTGC
CTTTCGTGGGAGGGCCGCTGCAAAAACCTGTGCTGGAGGAGTCGTTCGCG
AAGCAAAACATTTTGCTGGCTCTGGGAAGCTCTCTCTCACGAAATCGAGA
CGCGGCAACCATGCGATCGGCCCTTGCTGAGAGCATGATTCGTGCATCGG
GGCTTATTGATAGCATCGGAGATTTTTCTGTGGTGAGTCTGGAGGGACAA
GCGCCAAGCGCGGGCGACTGGGAGCAACTGATGGCGGGTCTGGACACGCG
AGGGGGCGTGACTGTGTTCGAGAAGGTCCTGGCTGCCAGCGAGCGGGTGG
ATTTGAATGTGTTGCAGGAGTGGCTGGTGAATGATTTCGGTGCGGGCCTG
TCGACGCTCGCCATCTCTCGCGTGCTCAACTCGCCCAAGCCCTCCATTGT
AATCAACACGGCCGTCGGCAGCGACATCGTCTGGCAGTTCGTCGGGAAAG
ACCTGAAGGTGCAGGGCTCTGGTCGGTGGTCCATTCAGTTGGACAGCGAG
GCCAGAACGATCAAAATCTTGCGAGAAAATGCCGAGGGGAAAATGTTGAC
TGAGGCTCTGCCGGGAGAGGAGGAATTGCTGCAGCGCTTTTCAGCAGCCA
TCAATCGGTTGGTCTATTCCCGCAAGCTTTCGAAACGGAGATGAATGCAA
CGCCCGCATCACACCTGCCTGGCGGGGCGGGGCTGGACATGGACGGAGAG
AGCGCTCACCTCCGTCGCCCCCGCAGGAAGCGACCTCCCCCCTTGCTGGC
CCCTGGGAACCCGCTTTAGACCGTCTCCCGGCGTCCGTCTCAAG back to top
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