EWM29701.1, cds971 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29701.1 vs. NCBI_GenBank
Match: gi|585112277|gb|EWM29701.1| (hypothetical protein Naga_100114g20 [Nannochloropsis gaditana]) HSP 1 Score: 1050.04 bits (2714), Expect = 0.000e+0 Identity = 523/523 (100.00%), Postives = 523/523 (100.00%), Query Frame = 0 Query: 1 MQRPHHTCLAGRGWTWTERALTSVAPAGSDLPPCWPLGTRFRPSPGVRLKDGEDKLGSKSVIVSKKMSIGARQSVWHRHFSVLWGFMIFTVLTLLQQGAWGFLAPPRTTLKDSCAIRAGKSLVMMSAEGMGKVAVVVGYEDGTAQLIAAKMATTLEGVRVRAILETGTSDPVPAMLLPPNVQVTRKSLDSIGSDDLAGASVALVSLDKGPKEEAGADPSNYLPLPTILSNIGPLTKVVIAAYANDTAAAGRVGGGLNLNIFARGVDPKEVVEAARSSGPGSAVIVLAQHGRLFGPPALATSPNAAVQVLPFVGGPLQKPVLEESFAKQNILLALGSSLSRNRDAATMRSALAESMIRASGLIDSIGDFSVVSLEGQAPSAGDWEQLMAGLDTRGGVTVFEKVLAASERVDLNVLQEWLVNDFGAGLSTLAISRVLNSPKPSIVINTAVGSDIVWQFVGKDLKVQGSGRWSIQLDSEARTIKILRENAEGKMLTEALPGEEELLQRFSAAINRLVYSRKLSKRR 523 MQRPHHTCLAGRGWTWTERALTSVAPAGSDLPPCWPLGTRFRPSPGVRLKDGEDKLGSKSVIVSKKMSIGARQSVWHRHFSVLWGFMIFTVLTLLQQGAWGFLAPPRTTLKDSCAIRAGKSLVMMSAEGMGKVAVVVGYEDGTAQLIAAKMATTLEGVRVRAILETGTSDPVPAMLLPPNVQVTRKSLDSIGSDDLAGASVALVSLDKGPKEEAGADPSNYLPLPTILSNIGPLTKVVIAAYANDTAAAGRVGGGLNLNIFARGVDPKEVVEAARSSGPGSAVIVLAQHGRLFGPPALATSPNAAVQVLPFVGGPLQKPVLEESFAKQNILLALGSSLSRNRDAATMRSALAESMIRASGLIDSIGDFSVVSLEGQAPSAGDWEQLMAGLDTRGGVTVFEKVLAASERVDLNVLQEWLVNDFGAGLSTLAISRVLNSPKPSIVINTAVGSDIVWQFVGKDLKVQGSGRWSIQLDSEARTIKILRENAEGKMLTEALPGEEELLQRFSAAINRLVYSRKLSKRR Sbjct: 1 MQRPHHTCLAGRGWTWTERALTSVAPAGSDLPPCWPLGTRFRPSPGVRLKDGEDKLGSKSVIVSKKMSIGARQSVWHRHFSVLWGFMIFTVLTLLQQGAWGFLAPPRTTLKDSCAIRAGKSLVMMSAEGMGKVAVVVGYEDGTAQLIAAKMATTLEGVRVRAILETGTSDPVPAMLLPPNVQVTRKSLDSIGSDDLAGASVALVSLDKGPKEEAGADPSNYLPLPTILSNIGPLTKVVIAAYANDTAAAGRVGGGLNLNIFARGVDPKEVVEAARSSGPGSAVIVLAQHGRLFGPPALATSPNAAVQVLPFVGGPLQKPVLEESFAKQNILLALGSSLSRNRDAATMRSALAESMIRASGLIDSIGDFSVVSLEGQAPSAGDWEQLMAGLDTRGGVTVFEKVLAASERVDLNVLQEWLVNDFGAGLSTLAISRVLNSPKPSIVINTAVGSDIVWQFVGKDLKVQGSGRWSIQLDSEARTIKILRENAEGKMLTEALPGEEELLQRFSAAINRLVYSRKLSKRR 523
BLAST of EWM29701.1 vs. NCBI_GenBank
Match: gi|298710823|emb|CBJ26332.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 81.2629 bits (199), Expect = 1.429e-13 Identity = 61/184 (33.15%), Postives = 96/184 (52.17%), Query Frame = 0 Query: 343 DAATMRSALAESMIR-ASGLIDSIG-DFSVVSLEGQAPSAGDWEQLMAGLDTRGGVTVFEKVLAASERVDLNVLQEWLVNDFG-AGLSTLAISRVLNSPKPSIVINTAVGSDIVWQFVGKDLKVQGSGRWSIQLDSEARTIKILRENAEGKMLTEALPGEEELLQRFSAAINRLVYSRKLSKRR 523 DAAT R+++AE++ R +G G + SVVS++G A + +WE+ + LD GV VF A R D L WL + +G A L + + +P V T G ++VW+ + DLK +G+ S+ + E I+I+R G+ +AL GEEE++Q IN + Y + KR+ Sbjct: 53 DAATKRASVAEAIERLINGSERKRGLELSVVSVDGFATTDEEWEEELKRLDDSDGVAVFSIEFDAISRKDQ--LMRWLADSWGPAALRKSTAGMLRSGARPVAVAPTESGLELVWETLTDDLKAVQAGKLSLVVTEEPAGIRIVRVAGPGQPQGKALSGEEEIVQSLLEGINTVAYPKSFVKRK 234
BLAST of EWM29701.1 vs. NCBI_GenBank
Match: gi|873221522|emb|CEM33438.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 71.2478 bits (173), Expect = 1.664e-9 Identity = 78/315 (24.76%), Postives = 136/315 (43.17%), Query Frame = 0 Query: 226 TILSNIGPLTKVVIAAYANDTAAAGRVGGGLNLNIFARGVDPKEVVEAARSSGPGSAVIVLAQHGRLFGPPALATSPNAAVQVLPFVGGPLQKPVLEESFAKQNILLALGSSLSR-NRDAATMRSALAESMIRASGLIDSIG---------DFSVVSLEGQA-PSAGDWEQLMAGLDTRGGVTVFEKVLAASERVDLN---VLQEWLVNDFGAGLSTLAISRVLNSPKPSIVINTAVGSDIVWQFVGKDLKVQGSGRWSIQLD---SEARTIKILRENAEGKMLTEALPGEEELLQRFSAAINRLVYSRKLSKRR 523 +ILS L VV A + G GG L + R DP + V + S S V+ ++GRL G T PF+ GPL+ P L+E + KQ + ++ SL + + T R +A++ ++ +DS+ D +V SLE PS W++ ++ LD + V LA +ER + V +EW GA + SR +P+ + A +VW+++ + G L+ + + T+++ R + + + L + L GE E++ F + + + R R+ Sbjct: 141 SILSQASSLKSVV--ATVPQSGETGYKGG--LLKMLKRKQDPLDQVISKYVSSKPSIRPVIVRYGRLIGGLGEPT---------PFLSGPLRAPQLDEFYVKQGVRMSRTVSLGKVTGETVTRRDQVAKAAVQCLENLDSVEYGGDGEAALDVTVFSLEDPTPPSDYVWQEQLSRLDDKYACDVLVMDLAKAERPEAFLAWVREEWGREAIGAATA----SRRSVGARPTAIERKADSVAMVWEYLDESFNAFTEGYLKFALEGAGTGSPTLRVSRYDGDDRPLLKPLFGESEIINLFLEGLTKTAFPRNFIARK 438 The following BLAST results are available for this feature:
BLAST of EWM29701.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|