EWM29701.1, cds971 (CDS) Nannochloropsis gaditana

Overview
NameEWM29701.1
Unique Namecds971
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:868063..868212 -
Alignment locationCM002456.1:866477..867898 -

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Properties
Property NameValue
Protein idEWM29701.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100114g20.2486.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:868063..868212 -
CM002456.1supercontigCM002456.1:866477..867898 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM29701.1 vs. NCBI_GenBank
Match: gi|585112277|gb|EWM29701.1| (hypothetical protein Naga_100114g20 [Nannochloropsis gaditana])

HSP 1 Score: 1050.04 bits (2714), Expect = 0.000e+0
Identity = 523/523 (100.00%), Postives = 523/523 (100.00%), Query Frame = 0
Query:    1 MQRPHHTCLAGRGWTWTERALTSVAPAGSDLPPCWPLGTRFRPSPGVRLKDGEDKLGSKSVIVSKKMSIGARQSVWHRHFSVLWGFMIFTVLTLLQQGAWGFLAPPRTTLKDSCAIRAGKSLVMMSAEGMGKVAVVVGYEDGTAQLIAAKMATTLEGVRVRAILETGTSDPVPAMLLPPNVQVTRKSLDSIGSDDLAGASVALVSLDKGPKEEAGADPSNYLPLPTILSNIGPLTKVVIAAYANDTAAAGRVGGGLNLNIFARGVDPKEVVEAARSSGPGSAVIVLAQHGRLFGPPALATSPNAAVQVLPFVGGPLQKPVLEESFAKQNILLALGSSLSRNRDAATMRSALAESMIRASGLIDSIGDFSVVSLEGQAPSAGDWEQLMAGLDTRGGVTVFEKVLAASERVDLNVLQEWLVNDFGAGLSTLAISRVLNSPKPSIVINTAVGSDIVWQFVGKDLKVQGSGRWSIQLDSEARTIKILRENAEGKMLTEALPGEEELLQRFSAAINRLVYSRKLSKRR 523
            MQRPHHTCLAGRGWTWTERALTSVAPAGSDLPPCWPLGTRFRPSPGVRLKDGEDKLGSKSVIVSKKMSIGARQSVWHRHFSVLWGFMIFTVLTLLQQGAWGFLAPPRTTLKDSCAIRAGKSLVMMSAEGMGKVAVVVGYEDGTAQLIAAKMATTLEGVRVRAILETGTSDPVPAMLLPPNVQVTRKSLDSIGSDDLAGASVALVSLDKGPKEEAGADPSNYLPLPTILSNIGPLTKVVIAAYANDTAAAGRVGGGLNLNIFARGVDPKEVVEAARSSGPGSAVIVLAQHGRLFGPPALATSPNAAVQVLPFVGGPLQKPVLEESFAKQNILLALGSSLSRNRDAATMRSALAESMIRASGLIDSIGDFSVVSLEGQAPSAGDWEQLMAGLDTRGGVTVFEKVLAASERVDLNVLQEWLVNDFGAGLSTLAISRVLNSPKPSIVINTAVGSDIVWQFVGKDLKVQGSGRWSIQLDSEARTIKILRENAEGKMLTEALPGEEELLQRFSAAINRLVYSRKLSKRR
Sbjct:    1 MQRPHHTCLAGRGWTWTERALTSVAPAGSDLPPCWPLGTRFRPSPGVRLKDGEDKLGSKSVIVSKKMSIGARQSVWHRHFSVLWGFMIFTVLTLLQQGAWGFLAPPRTTLKDSCAIRAGKSLVMMSAEGMGKVAVVVGYEDGTAQLIAAKMATTLEGVRVRAILETGTSDPVPAMLLPPNVQVTRKSLDSIGSDDLAGASVALVSLDKGPKEEAGADPSNYLPLPTILSNIGPLTKVVIAAYANDTAAAGRVGGGLNLNIFARGVDPKEVVEAARSSGPGSAVIVLAQHGRLFGPPALATSPNAAVQVLPFVGGPLQKPVLEESFAKQNILLALGSSLSRNRDAATMRSALAESMIRASGLIDSIGDFSVVSLEGQAPSAGDWEQLMAGLDTRGGVTVFEKVLAASERVDLNVLQEWLVNDFGAGLSTLAISRVLNSPKPSIVINTAVGSDIVWQFVGKDLKVQGSGRWSIQLDSEARTIKILRENAEGKMLTEALPGEEELLQRFSAAINRLVYSRKLSKRR 523          
BLAST of EWM29701.1 vs. NCBI_GenBank
Match: gi|298710823|emb|CBJ26332.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 81.2629 bits (199), Expect = 1.429e-13
Identity = 61/184 (33.15%), Postives = 96/184 (52.17%), Query Frame = 0
Query:  343 DAATMRSALAESMIR-ASGLIDSIG-DFSVVSLEGQAPSAGDWEQLMAGLDTRGGVTVFEKVLAASERVDLNVLQEWLVNDFG-AGLSTLAISRVLNSPKPSIVINTAVGSDIVWQFVGKDLKVQGSGRWSIQLDSEARTIKILRENAEGKMLTEALPGEEELLQRFSAAINRLVYSRKLSKRR 523
            DAAT R+++AE++ R  +G     G + SVVS++G A +  +WE+ +  LD   GV VF     A  R D   L  WL + +G A L       + +  +P  V  T  G ++VW+ +  DLK   +G+ S+ +  E   I+I+R    G+   +AL GEEE++Q     IN + Y +   KR+
Sbjct:   53 DAATKRASVAEAIERLINGSERKRGLELSVVSVDGFATTDEEWEEELKRLDDSDGVAVFSIEFDAISRKDQ--LMRWLADSWGPAALRKSTAGMLRSGARPVAVAPTESGLELVWETLTDDLKAVQAGKLSLVVTEEPAGIRIVRVAGPGQPQGKALSGEEEIVQSLLEGINTVAYPKSFVKRK 234          
BLAST of EWM29701.1 vs. NCBI_GenBank
Match: gi|873221522|emb|CEM33438.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 71.2478 bits (173), Expect = 1.664e-9
Identity = 78/315 (24.76%), Postives = 136/315 (43.17%), Query Frame = 0
Query:  226 TILSNIGPLTKVVIAAYANDTAAAGRVGGGLNLNIFARGVDPKEVVEAARSSGPGSAVIVLAQHGRLFGPPALATSPNAAVQVLPFVGGPLQKPVLEESFAKQNILLALGSSLSR-NRDAATMRSALAESMIRASGLIDSIG---------DFSVVSLEGQA-PSAGDWEQLMAGLDTRGGVTVFEKVLAASERVDLN---VLQEWLVNDFGAGLSTLAISRVLNSPKPSIVINTAVGSDIVWQFVGKDLKVQGSGRWSIQLD---SEARTIKILRENAEGKMLTEALPGEEELLQRFSAAINRLVYSRKLSKRR 523
            +ILS    L  VV  A    +   G  GG   L +  R  DP + V +   S   S   V+ ++GRL G     T         PF+ GPL+ P L+E + KQ + ++   SL +   +  T R  +A++ ++    +DS+          D +V SLE    PS   W++ ++ LD +    V    LA +ER +     V +EW     GA  +    SR     +P+ +   A    +VW+++ +       G     L+   + + T+++ R + + + L + L GE E++  F   + +  + R    R+
Sbjct:  141 SILSQASSLKSVV--ATVPQSGETGYKGG--LLKMLKRKQDPLDQVISKYVSSKPSIRPVIVRYGRLIGGLGEPT---------PFLSGPLRAPQLDEFYVKQGVRMSRTVSLGKVTGETVTRRDQVAKAAVQCLENLDSVEYGGDGEAALDVTVFSLEDPTPPSDYVWQEQLSRLDDKYACDVLVMDLAKAERPEAFLAWVREEWGREAIGAATA----SRRSVGARPTAIERKADSVAMVWEYLDESFNAFTEGYLKFALEGAGTGSPTLRVSRYDGDDRPLLKPLFGESEIINLFLEGLTKTAFPRNFIARK 438          
The following BLAST results are available for this feature:
BLAST of EWM29701.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585112277|gb|EWM29701.1|0.000e+0100.00hypothetical protein Naga_100114g20 [Nannochlorops... [more]
gi|298710823|emb|CBJ26332.1|1.429e-1333.15conserved unknown protein [Ectocarpus siliculosus][more]
gi|873221522|emb|CEM33438.1|1.664e-924.76unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna972rna972Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications