rna9715, rna9715 (mRNA) Nannochloropsis gaditana

Overview
Namerna9715
Unique Namerna9715
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2801
Alignment locationKK037255.1:236456..237723 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100211g7.3043.mrna
Orig protein idgnl|cribi|Naga_100211g7.3043
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:236456..237723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100211g7gene9434Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20989.1cds9684Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9715rna9715-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9715 ID=rna9715|Name=rna9715|organism=Nannochloropsis gaditana|type=mRNA|length=2801bp
GCCATCCCGCTAGGAGCTTTAAAATATTCCTCCCCTCGCGTGGATGGTTG
GAAGCGGCCGTCTTCAACCTTGCTTTCCGATGCGTTGCCGTCCTCGCAAA
TGCCTACTGGCCGCGCTGGTACCTGAGTGATTGCGTATTTTTCAGTTTTT
AAACATTAATGTCGGGTAATCGCCTACAATGTTGCTTGTGACGTTGTTAT
TACCCGAGCTCGCAGCTTATAACCTCCTGGCTACATAAGCTATTAGCACC
CGACGGGCAAATATGCTGTGGCACTTCTCTAGGAACGCATGCGGCTCCTG
ATATGGTCACACGTTTCCACGTCAAGCAATTGTAGCATCGGTTCACGCAG
GAATCAATGACTTTTGGGGGGCATTTACGAAGGTGGCCGCCGTTGTCCTC
CTTTTTGGGCTTCGAGCGAGGCGTACGCTGCGCTCTGCGCTGCCAGCCCA
ACACCTACTACATGGCCTAGGCGGGGCAAGAAGTGCCCTTTCATCCCTTT
CAACGGGCCTGAGACAAAACCATGGTGTTTAAAATGCTGGCATCATTGGA
GATTGTTAGGTGGTCGAATTATTTTTAAGAACGCATGGGAAACTTTTCTT
GTTGAACTACTCGCTCATCTAACTAGTCTACTAATGTGGGCGTGCATGTT
GGCTTAATTGCCCATAATCACGAGGATTTTCGAGCAGACAAGCCTTGTGG
TTATCATTATTTACTTGGCATGGAACGTTACCACTGTGGATCCCCAGGCC
CCTGCGAAAGACATCAAAAACAGACATATTTTGTGGGAGAGTCACGCGCA
GGCAAGATTGCTGAATGCAGATCGGAGTCTTGATGGTGTACGACAGAGTA
GTTGCTAGTTTGCGGCAGAGTGTATGGTTCCCGATTGAGGCAGCCCAGGA
ATGGGGAGGCCGCGGTCAAATCCATGGGGTCCAGGGTACCGCCGATGCCA
TGTGAAGAAGCTAGGGCGCTAGGGCCGTGGGTGTGCTCGACGCGAGCCGA
CGATGTTCGTACATGTCTCGTGTATCTATGGCACGAGTGTTCTTAATGTC
CAGTGTCTTGGCGGGGACACTCCGGGAAAGCCTTAAATGACCCCGCCTTC
TTGCTTGTGGGCTAGCGTACCCACGACATACACATTCACATGTATGACAC
CACGCTCAGAAAAGTCTCCCCTCCTGCTACAGTGCCCGGCCTCGGTCATG
CGGAGAACGGCTGGCTTCCTCCCATGGATGTCGATAGTTTGCAGCAGCAG
TCCCCAGACCGGTCTTCCTCCCCCTTCCCCGCCACGGCCAACCTGAGGCT
GGAGACCGGAGGGTCCTTGTGCCTGCACGTGGACGTCCTGGGCGACGACG
GCCAAGGAGGGCCCTCGATGGGAACCGGGGGCGGCGAGTCCTTCCTCCTT
CAAGCGCATCGCCTGGACGCGGGCGGGGGGGAGCCGCGGGTCTGGGGAGC
GGTGGTGGGGGAGGACGGGGGAAGGCGGCGGAGGGAGCTAGTCGCCCTGG
GGGGGGTCTTGCGGAGGCCCGTGGGGGGAAGGGCTCTGGACGTGGCGGCG
GTGGAGGAGGCAGACGGTGCGCTCTCTCTCAGCATCAAGGAGCGGGTGGA
GAAGGGGAAGAAGCTAGTGCTCCGGACCACAAGGTTGGTCCCCGCCCTGT
CGCCTGGGGACAGCCTGGGGAGGGCCTTGTCGGGGGCGGCGGCCCAGCTC
GCTCGGGCGTGGGGGCAGCTGGAGGAGGCGGAGAGGGAAAAGGCGGTCTT
GCGGGGGGAGCACGAGAAGATGCAGGAGGTGTTGCGCATGCGGGTGGCGG
ACAAGGACTGGGTACAGAGCGAGCTCCTCGCCAAGTTCAACCTGGTGCTG
AACGCCAAGAGGGCCAAGATTGCTGAGCTACAAGAGCGCTTGAGGTCAAA
GGGGGAGGGAGGCGCTGAGCTCGAGGAGGGAGACGACCGAAGAGGCGCCG
GGGGGAAGCCCGAGGGGGCTCGGACGGCGTCGAAGAAGAAGCGGGGCCGT
GGGCGGGAGAGCGCGGTGTCACAGGGTCCCACGGGCGTGGTGGGGGACGA
GGGCGAGGACGCGAAGGAGGGTGGAGGCTCTGGAAGGAGACCGTTCTGGA
GGAGGGCACCCGTGCGTGGTGGCAGAGGGTCAGCCGCTGGGGGCGGTGCC
GGGGATGGGAGTCATGGAGGCGGGGAGGATTCAGGGGGGGAGGGCGCGGA
GGAAGGAATTTGGGGGTGCCACACAGGGCATGCCGACGTTCTGCCGGCGC
CAGTGGGTACGACCGAGGTGCATGGGGGGCTGGAAGAGCTCTTCAAGGCC
AGGAGGGGACCCCGGAGCGGCAGCCTGACTACTGCCAGCACCGGCGACGG
CGGTCGCGGGGATGGTCGGCTGCCCGAGTCAAAGGGTGACCTTGGCGAGC
ATGGAGCAGGCAGAGGAGGGAGAACGGAATTTCTTGGGCGGCGGGAGGCA
CCCGGCCGCTCAGCTGCCCCTCGAGCTACGCCCGGCGTGACCGAAGAGCT
GGCACGGACCCCGAAGAAATCCTACGGATTGTTAGACTCGGACTCGGATT
AGCCGGAGGCCACGATATGGGAAAGGGAATAAGAGATATGTGGGTGCTTA
ATCATAGAGACCACTGCAAGACAAGCCATGTATAGCCGCATGTGTGGATT
TAAATACGACGAGACATACGCCACATTAGTTGTGCAGCTTACTTGCCTGG
ATGCTGACCACATTGTTCCAGATGTGTCAGCTTTTGCCGGTGCTGCAACA
TTCCTTTTATAATACGATACTTCAAAAAAAGAAGAGGAATACAAGATATG
C
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protein sequence of rna9715

>rna9715-protein ID=rna9715-protein|Name=rna9715|organism=Nannochloropsis gaditana|type=polypeptide|length=337bp
MALCACLPASRPPAFLGSRTTAAGFIIPPFSLDPPNLQSLRRHESRSLRT
LRWVESPRPPPRSGGVSADGKAQKSSFYKRPSKAIEMGGGFFIPGLEGYK
LRLATALLVLLLLALNRYPGYTPAASQLTSEAIGAGAAVILLAQALIEKL
ITEAGVAQQEEEDNGGLKPKIGGRSGRTGGMEEEYLGPGPGSAMEDDVRW
VGYALDENLNCPAVALLDSERGLLYYRRRRRISSPFPPSSSPLKELALAL
AQALPAQSRRAVGMSDALASLGGAGGTTGMGLAQVLGMSKVEGAVVVRVG
PRAVLAVAPPAGGIMRDQAVWVERAAALLEASGLGEG
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mRNA from alignment at KK037255.1:236456..237723-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9715 ID=rna9715|Name=rna9715|organism=Nannochloropsis gaditana|type=mRNA|length=1268bp|location=Sequence derived from alignment at KK037255.1:236456..237723- (Nannochloropsis gaditana)
TGTCACCCTGTGAAGCATCGCAATCCAGCCTACGTACCACTCCCCTCCTT
CACAGCTAGAGCTGCCCGTGACATTAAACAAATCGTTGCAGCCCGCGACT
TTCTATAAAACTGTGAAGTAAATACACGTGTACGCTCACTATCTGCTATC
CCCGGCCTCAGGTGCCATCAGGCGCGGGTTCCTTTCCCCTTGACCGCCCC
TCGTGACTCCTACTACATTGAGACGGTCCAAACCCCTCCTTGTCAGCCGG
CATGGCCCTTTGCGCCTGCCTCCCCGCTTCACGCCCCCCTGCTTTTTTGG
GTTCGCGTACCACTGCCGCGGGCTTCATCATACCTCCTTTCTCCTTGGAC
CCCCCAAATTTGCAATCTTTACGCCGACACGAAAGCAGAAGCCTGCGCAC
ATTGCGATGGGTTGAGTCCCCTCGACCTCCCCCCCGCAGCGGCGGCGTCA
GCGCCGATGGCAAAGCCCAGAAATCAAGCTTTTACAAGCGTCCTTCGAAA
GCGATTGAAATGGGTGGAGGATTCTTCATTCCGGGCTTGGAGGGCTACAA
GTTGCGCCTGGCCACCGCGCTACTGGTCCTACTCCTTCTCGCCCTGAACC
GCTACCCGGGGTACACCCCTGCGGCCTCCCAGTTGACGAGCGAGGCGATC
GGTGCCGGCGCGGCAGTTATACTCCTGGCACAGGCTCTTATAGAAAAACT
GATAACAGAAGCCGGCGTTGCCCAGCAGGAGGAAGAGGACAATGGCGGGC
TTAAACCCAAAATTGGCGGCAGAAGCGGTCGGACCGGGGGGATGGAGGAA
GAATACTTGGGGCCGGGGCCGGGCTCGGCGATGGAAGACGACGTAAGATG
GGTGGGATACGCGCTAGACGAGAATTTGAACTGCCCAGCTGTGGCTTTGC
TGGATAGCGAGAGAGGGCTCCTGTACTATCGGCGGCGACGCCGCATCTCC
AGCCCTTTCCCCCCCTCTTCCTCTCCCCTGAAAGAGCTCGCTCTGGCACT
GGCGCAGGCCTTGCCCGCACAATCTCGACGCGCCGTGGGCATGAGCGACG
CACTGGCCTCGCTAGGGGGGGCGGGCGGCACCACTGGGATGGGGCTGGCG
CAAGTCCTGGGTATGAGCAAAGTCGAGGGGGCGGTGGTGGTGAGGGTAGG
ACCGCGGGCGGTGCTGGCTGTGGCACCGCCAGCGGGAGGGATCATGCGGG
ACCAAGCCGTGTGGGTGGAAAGAGCAGCAGCGTTGCTGGAGGCGTCGGGG
CTGGGGGAAGGATAGCGA
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Coding sequence (CDS) from alignment at KK037255.1:236456..237723-

>rna9715 ID=rna9715|Name=rna9715|organism=Nannochloropsis gaditana|type=CDS|length=1014bp|location=Sequence derived from alignment at KK037255.1:236456..237723- (Nannochloropsis gaditana)
ATGGCCCTTTGCGCCTGCCTCCCCGCTTCACGCCCCCCTGCTTTTTTGGG
TTCGCGTACCACTGCCGCGGGCTTCATCATACCTCCTTTCTCCTTGGACC
CCCCAAATTTGCAATCTTTACGCCGACACGAAAGCAGAAGCCTGCGCACA
TTGCGATGGGTTGAGTCCCCTCGACCTCCCCCCCGCAGCGGCGGCGTCAG
CGCCGATGGCAAAGCCCAGAAATCAAGCTTTTACAAGCGTCCTTCGAAAG
CGATTGAAATGGGTGGAGGATTCTTCATTCCGGGCTTGGAGGGCTACAAG
TTGCGCCTGGCCACCGCGCTACTGGTCCTACTCCTTCTCGCCCTGAACCG
CTACCCGGGGTACACCCCTGCGGCCTCCCAGTTGACGAGCGAGGCGATCG
GTGCCGGCGCGGCAGTTATACTCCTGGCACAGGCTCTTATAGAAAAACTG
ATAACAGAAGCCGGCGTTGCCCAGCAGGAGGAAGAGGACAATGGCGGGCT
TAAACCCAAAATTGGCGGCAGAAGCGGTCGGACCGGGGGGATGGAGGAAG
AATACTTGGGGCCGGGGCCGGGCTCGGCGATGGAAGACGACGTAAGATGG
GTGGGATACGCGCTAGACGAGAATTTGAACTGCCCAGCTGTGGCTTTGCT
GGATAGCGAGAGAGGGCTCCTGTACTATCGGCGGCGACGCCGCATCTCCA
GCCCTTTCCCCCCCTCTTCCTCTCCCCTGAAAGAGCTCGCTCTGGCACTG
GCGCAGGCCTTGCCCGCACAATCTCGACGCGCCGTGGGCATGAGCGACGC
ACTGGCCTCGCTAGGGGGGGCGGGCGGCACCACTGGGATGGGGCTGGCGC
AAGTCCTGGGTATGAGCAAAGTCGAGGGGGCGGTGGTGGTGAGGGTAGGA
CCGCGGGCGGTGCTGGCTGTGGCACCGCCAGCGGGAGGGATCATGCGGGA
CCAAGCCGTGTGGGTGGAAAGAGCAGCAGCGTTGCTGGAGGCGTCGGGGC
TGGGGGAAGGATAG
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Synonyms
Publications