rna9714, rna9714 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9714
Unique Name	rna9714
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2832
Alignment location	KK037255.1:228600..231400 +

Link to JBrowse

Properties


Property Name	Value
Product	DNA double-strand break repair and VJ recombination XRCC4
Orig transcript id	gnl\|cribi\|Naga_100211g4.3045.mrna
Orig protein id	gnl\|cribi\|Naga_100211g4.3045
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037255.1	supercontig	KK037255.1:228600..231400 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100211g4	gene9433	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9714	rna9714-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20991.1	cds9683	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037255.1:228600..231400+
coding sequence from alignment at KK037255.1:228600..231400+

mRNA sequence

>rna9714 ID=rna9714|Name=rna9714|organism=Nannochloropsis gaditana|type=mRNA|length=2832bp
CCGTCGAGTGCCCACGACTTCTTGAGGCGGCACCCAGACTTTTTGTTCAT
AGTGGCGGGGGAACTCAACAGGAGCATTGGACGGGGCGCAGACAGGGAAG
GAAACCCTATGCTCGCGGCCGCCTTGTCGAACCTGACCGCCATCCACGTC
GCGGCCCTGTTGCCCCCCCCAGATGAGGAGAGATGCCGCTCAGACGTCGC
CTTGCCTCTTTCCCCTTATCTTGCTCCTGTCTCGTCTGCGGCCCCCTTCC
GAACACGTTGCAGAAAACGAGACTAGTGGAGCTTTGGACGAGTCGTTGAA
GCAATGCCTCCCCTCCGTCGTCCGATGCGCATGCTTGCCCGATGGACTCA
TGCGTCTGACGGCGGCGCGTGCCTTCGCTTCTTTGGTGGGCCCCCTTCGC
GCGGCCGCGGTGGTGCTTGCTCTCCTTTCTGCGCTCCCTCCCTCATGCGG
TGCTGCGCATCCCGCGCTCGACCCAGCTTTTAGAGGAGCCAGCCATGAAT
ATTACAATACCCTTCACGGCATCCTGCTCATGATCAATTCACTCTTGCGA
AGCGTTCCTCAGGCTGTGTGTCGCCTGCGTCATGACGATGGAGGCGAGGT
CCTAGGCAGTCTGCCCCACTTCCTTCCGCTTTGCTCGGATTCAGGTCTAA
GCCTCGTCGAAGAGAGACGTTGGTTGACGGGCCCAGGAATGACCTGTCCG
CCCGTCCGGGAGGAAGCTTTGCAAATGTTTCTGTACATTAACCATCTCTT
GGAGAGTTTGGAACCGGCGCAAGCACCCATTGCAGCATCGGAACGGTCAG
CCGCACAAGTATTTCGGCACACGCATAGACACCCGTTACATGCGGCAGGC
GATGGGGTTATTTCCACGACTCTTCAACATCGACGGTCTGAGCCGAGAGA
GGGAGCGCGGTCCGTGAAGTCTTTGCGCGGGGTCATTCAGGCATCCGTGA
AAGATTTACTGGACTTGATCGAGGCAGGTGCCTCGCTCGACAAAGCGCTA
CCAGGGTTTGCTAGCCTCATCGCCTGGGCCACGCGCTGGAGCCTTCCCCT
CTCCTTGTCGTGTGAGAGCCTCGAATCTAGAACGCCTTGCATGCTGGAGA
AGGTTCTCGCAACCTGGCTGCGTCACCGCATAGTCGAGGTCCGTCGAGAG
GCCCTCCGCGTCCTTCTCTTCCTTCTGAACCGGCGAGCGGACCTTGGGGA
CGGACAAACCCAGGAGGACGGGGCGGCCGACGACAAGTTTCTGGAGCAGA
CACTGCGCGTGGCCTGCAGAGAGCCGTGTAACGCTCTCTGGCAGGAAGTT
AAAGTGGCCTTGGTGGCGCAGGTGCAAGAACGCGAGCGAAACCCGAGCCT
GCTCAAAGGCCAGATGGAGGCCCTCTGTTCCCTGTTGGGAGAGAAGAGGC
GCACGCGCTCTTTCTCCGTTCCGCTAGCGGAGTCGTGCGCGCATGTTTCG
AAAGGAGATGTCCGTGTTTTGGCTCAGAATGCGGCACCGCGCGATCTTGA
AACGTCTGGGAAGCTTTTGTGCTGTATCTTCCGGCACGAGCCCCAGGCTT
TTTCGTCCGTCTGTTTGGCCTCAGGGGGGGGAGGTGGCATTCTTGCGCGG
AAACTGGAGTTGATGGGCCATGTGGTTGGTGAAGAGGTCAGGAGAGCGCA
GCAGTATGAGCTGGATCGCAACACGGCGAAGATTTCGTATGATCGAGGCC
TTAAGAATGTTGAGGAATGGATGTGTCTCATTGAAAGCGCTGCCTTGCCT
ACACAGACATCAGCCATGCGCCAGGCGGCTCTGAGCTCTCTTCGGGCCTC
GGGTCTGGGCGTCCTACCAGAGAGCTCGGACGCCCCCCACTTCGGCCCTT
TCCGTGTCCGAGCGCTCTTCGCGGTCTCTGTGCTGGCCCAGGACGACGAG
GATGCGATCCGCGAGGGGGCGCGCAGCGTCTTGGAGGCAGCTGTTGCGGG
GAAGCGACTGGCGAGGCCGGCTGCCCAAATTGGTCCTACGAGTTCAGCGA
CCCCCTGCCTGGACCCTCTCATCAGCTACAGGCTCTCCCAGTTGGCTCGG
TGCAGCCAAGGCGTCGCCGAGGAGTGGGGTCGGGCCGTCGTCCGCGTGGT
GATCCTGCGGATCCGAGGGCTGGAAGCGGTGCTCAGAATCTCGGTGACAC
CCCCTCATTTGGGCCTCTCTCAACAAATATTTCGGCCGGAGCCTGACAAC
GTCTTCGAGGAGCCAGCCCTGGTCAGTTACTGGGCTGTTCGCTCGCTCAT
AGTGTCATTGGCAGAAATAGAGGAGCCGAGCTCGTTCTACGAGGTGGGCC
AAGGACCGGAGGGGCAGGGGGGTGGGAAAGGGGGTTGCTCCAGTGCCTTG
CCTACAGGCTGGTTTGAGAATGCGGAATTGGCTGAGCTGGACGCGCTCTG
GGAGCACGCGGGGCTGGTCACTGAGGCCTTTGAGTCCTCCGCCTGGCCTG
GAGGCCTGACTTACCATCCCGACGTCTTCGGTACGCTCTTCGTGGCTGCG
CTTGGACAGCTACTCAAAACAGTCCTTGCGCCGGTCTCCGGAGAAATGGA
GGATCGCAGAACTCTCTGGAAGCGTCTCCAGGAGGTGGGAGAATCTCACC
CGCTCATGGCATGGGCGCTGTCGAGTCTGCAGGCGGTAACCGGTAAGGAG
GAGCCCAAAACGGTCCAAGCACGCGCGAAAATGGTGTTGGATGCAGTGAA
TTGGACGGTGGTGGACAAATACACGCCTTTCGCCAGGCCCGGTCTGGAGA
CGGACACCTTCCTTTCTGTACAGAGGGCGACTTGGGAAAAAGCAATGTAA
AAAGTCTACAAATAGCCGCCCTTTTTATGTGC

protein sequence of rna9714

>rna9714-protein ID=rna9714-protein|Name=rna9714|organism=Nannochloropsis gaditana|type=polypeptide|length=470bp
MYDTTLRKVSPPATVPGLGHAENGWLPPMDVDSLQQQSPDRSSSPFPATA
NLRLETGGSLCLHVDVLGDDGQGGPSMGTGGGESFLLQAHRLDAGGGEPR
VWGAVVGEDGGRRRRELVALGGVLRRPVGGRALDVAAVEEADGALSLSIK
ERVEKGKKLVLRTTRLVPALSPGDSLGRALSGAAAQLARAWGQLEEAERE
KAVLRGEHEKMQEVLRMRVADKDWVQSELLAKFNLVLNAKRAKIAELQER
LRSKGEGGAELEEGDDRRGAGGKPEGARTASKKKRGRGRESAVSQGPTGV
VGDEGEDAKEGGGSGRRPFWRRAPVRGGRGSAAGGGAGDGSHGGGEDSGG
EGAEEGIWGCHTGHADVLPAPVGTTEVHGGLEELFKARRGPRSGSLTTAS
TGDGGRGDGRLPESKGDLGEHGAGRGGRTEFLGRREAPGRSAAPRATPGV
TEELARTPKKSYGLLDSDSD

mRNA from alignment at KK037255.1:228600..231400+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9714 ID=rna9714|Name=rna9714|organism=Nannochloropsis gaditana|type=mRNA|length=2801bp|location=Sequence derived from alignment at KK037255.1:228600..231400+ (Nannochloropsis gaditana)
GCCATCCCGCTAGGAGCTTTAAAAtattcctcccctcgcgtGGATGGTTG
GAAGCGGCCGTCTTCAACCTTGCTTTCCGATGCGTTGCCGTCCTCGCAAA
TGCCTACTGGCCGCGCTGGTACCTGAGTGATTGCGTATTTTTCAGTTTTT
AAACATTAATGTCGGGTAATCGCCTACAATGTTGCTTGTGACGTTGTTAT
TACCCGAGCTCGCAGCTTATAACCTCCTGGCTACATAAGCTATTAGCACC
CGACGGGCAAATATGCTGTGGCACTTCTCTAGGAACGCATGCGGCTCCTG
ATATGGTCACACGTTTCCACGTCAAGCAATTGTAGCATCGGTTCACGCAG
GAATCAATGACTTTTGGGGGGCATTTACGAAGGTGGCCGCCgttgtcctc
ctttttggGCTTCGAGCGAGGCGTACGCTGCGCTCTGCGCTGCCAGCCCA
ACACCTACTACATGGCCTAGGCGGGGCAAGAAGTGCCCTTTCATCCCTTT
CAACGGGCCTGAGACAAAACCATGGTGTTTAAAATGCTGGCATCATTGGA
GATTGTTAGGTGGTCGAATTATTTTTAAGAACGCATGGGAAACTTTTCTT
GTTGAACTACTCGCTCATCTAACTAGTCTACTAATGTGGGCGTGCATGTT
GGCTTAATTGCCCATAATCACGAGGATTTTCGAGCAGACAAGCCTTGTGG
TTATCATTATTTACTTGGCATGGAACGTTACCACTGTGGATCCCCAGGCC
CCTGCGAAAGACATCAAAAACAGACATATTTTGTGGGAGAGTCACGCGCA
GGCAAGATTGCTGAATGCAGATCGGAGTCTTGATGGTGTACGACAGAGTA
GTTGCTAGTTTGCGGCAGAGTGTATGGTTCCCGATTGAGGCAGCCCAGGA
ATGGGGAGGCCGCGGTCAAATCCATGGGGTCCAGGGTACCGCCGATGCCA
TGTGAAGAAGCTAGGGCGCTAGGGCCGTGGGTGTGCTCGACGCGAGCCGA
CGATGTTCGTACATGTCTCGTGTATCTATGGCACGAGTGTTCTTAATGTC
CAGTGTCTTGGCGGGGACACTCCGGGAAAGCCTTAAATGACCCCGCCTTC
TTGCTTGTGGGCTAGCGTACCCACGACATACACATTCACATGTATGACAC
CACGCTCAGAAAAGTCTCCCCTCCTGCTACAGTGCCCGGCCTCGGTCATG
CGGAGAACGGCTGGCTTCCTCCCATGGATGTCGATAGTTTGCAGCAGCAG
TCCCCAGAccggtcttcctcccccttccccgccacggCCAACCTGAGGCT
GGAGACCGGAGGGTCCTTGTGCCTGCACGTGGACGTCCTGGGCGAcgacg
gccaaggagggcccTCGATGGGAACCGGGGGCGGcgagtccttcctcctt
caagcgCATCGcctggacgcgggcgggggggagccgCGGGTCTGGGGagc
ggtggtgggggaggacgggggaaggcggcggagggagctAGTCGCCCTGG
GGGGGGTCTTGCGGAGGCccgtggggggaagggctctggacgtggcggcg
gtggaggaggcagacggTGCGCTCTCTCTCAGCATCAAGGAGcgggtgga
gaaggggaagaagctaGTGCTCCGGACCACAAGGTTGGTCCCCGCCCTGT
CGCCTGGGGACAGCCTGGGGAGGGCCTTgtcgggggcggcggcccaGCTC
GCTCGGGCGTGGgggcagctggaggaggcggagagggaaaaggcggtCTT
GCGGGGGGAGCACGAGAAGATGCAGGAGGTGTTGCGCATGCGGGTGGCGG
ACAAGGACTGGGTACAGAGCGAGCTCCTCGCCAAGTTCAACCTGGTGCTG
AACGCCAAGAGGGCCAAGATTGCTGAGCTACAAGAGCGCTTGAGGtcaaa
gggggagggaggcgctgagctcgaggagggagacgaccgAAGAGGCGCCG
GGGGGAAGCCCGAGGGGGCTCGGACGGcgtcgaagaagaagcggggccgt
gggcgggAGAGCGCGGTGTCACAGGGTCCCACGGGCGTGgtgggggacga
gggcgaggacgcgaaggagggtggaggctcTGGAAGGAGACCgttctgga
ggagggcaccCGTGCGTGGTGGCAGAGGGTCAGCCGCTGGGGGCGGTGCC
GGGGATGGGAGtcatggaggcggggaggattcagggggggagggcgcgga
ggaaggaatttGGGGGTGCCACACAGGGCATGCCGACGTTCTGCCGGCGC
CAGTGGGTACGACCGAGGTGCATGGGGGGCTGGAAGAGCTCTtcaaggcc
aggaggggaCCCCGGAGCGGCAGCCTGACTACTGCCAGCACCGGCGACGG
CGGTCGCGGGGATGGTCGGCTGCCCGAGTCAAAGGGTGACCTTGGCGAGC
ATGGagcaggcagaggagggagaacggaATTTCTTGGGCGGCGGGAGGCA
CCCGGCCGCTCAGCTGCCCCTCGAGCTACGCCCGGCGTGACCGAAGAGCT
GGCACGGACCCCGAAGAAATCCTACGGATTGTTAGACTCGGACTCGGATT
AGCCGGAGGCCACGATATGGGAAAGGGAATAAGAGATATGTGGGTGCTTA
ATCATAGAGACCACTGCAAGACAAGCCATGTATAGCCGCATGTGTGGATT
TAAATACGACGAGACATACGCCACATTAGTTGTGCAGCTTACTTGCCTGG
ATGCTGACCACATTGTTCCAGATGTGTCAGCTTTTGCCGGTGCTGCAACA
TTCCTTTTATAATACGATACTtcaaaaaaagaagaggaatacAAGATATG
C

Coding sequence (CDS) from alignment at KK037255.1:228600..231400+

>rna9714 ID=rna9714|Name=rna9714|organism=Nannochloropsis gaditana|type=CDS|length=1413bp|location=Sequence derived from alignment at KK037255.1:228600..231400+ (Nannochloropsis gaditana)
ATGTATGACACCACGCTCAGAAAAGTCTCCCCTCCTGCTACAGTGCCCGG
CCTCGGTCATGCGGAGAACGGCTGGCTTCCTCCCATGGATGTCGATAGTT
TGCAGCAGCAGTCCCCAGAccggtcttcctcccccttccccgccacggCC
AACCTGAGGCTGGAGACCGGAGGGTCCTTGTGCCTGCACGTGGACGTCCT
GGGCGAcgacggccaaggagggcccTCGATGGGAACCGGGGGCGGcgagt
ccttcctccttcaagcgCATCGcctggacgcgggcgggggggagccgCGG
GTCTGGGGagcggtggtgggggaggacgggggaaggcggcggagggagct
AGTCGCCCTGGGGGGGGTCTTGCGGAGGCccgtggggggaagggctctgg
acgtggcggcggtggaggaggcagacggTGCGCTCTCTCTCAGCATCAAG
GAGcgggtggagaaggggaagaagctaGTGCTCCGGACCACAAGGTTGGT
CCCCGCCCTGTCGCCTGGGGACAGCCTGGGGAGGGCCTTgtcgggggcgg
cggcccaGCTCGCTCGGGCGTGGgggcagctggaggaggcggagagggaa
aaggcggtCTTGCGGGGGGAGCACGAGAAGATGCAGGAGGTGTTGCGCAT
GCGGGTGGCGGACAAGGACTGGGTACAGAGCGAGCTCCTCGCCAAGTTCA
ACCTGGTGCTGAACGCCAAGAGGGCCAAGATTGCTGAGCTACAAGAGCGC
TTGAGGtcaaagggggagggaggcgctgagctcgaggagggagacgaccg
AAGAGGCGCCGGGGGGAAGCCCGAGGGGGCTCGGACGGcgtcgaagaaga
agcggggccgtgggcgggAGAGCGCGGTGTCACAGGGTCCCACGGGCGTG
gtgggggacgagggcgaggacgcgaaggagggtggaggctcTGGAAGGAG
ACCgttctggaggagggcaccCGTGCGTGGTGGCAGAGGGTCAGCCGCTG
GGGGCGGTGCCGGGGATGGGAGtcatggaggcggggaggattcagggggg
gagggcgcggaggaaggaatttGGGGGTGCCACACAGGGCATGCCGACGT
TCTGCCGGCGCCAGTGGGTACGACCGAGGTGCATGGGGGGCTGGAAGAGC
TCTtcaaggccaggaggggaCCCCGGAGCGGCAGCCTGACTACTGCCAGC
ACCGGCGACGGCGGTCGCGGGGATGGTCGGCTGCCCGAGTCAAAGGGTGA
CCTTGGCGAGCATGGagcaggcagaggagggagaacggaATTTCTTGGGC
GGCGGGAGGCACCCGGCCGCTCAGCTGCCCCTCGAGCTACGCCCGGCGTG
ACCGAAGAGCTGGCACGGACCCCGAAGAAATCCTACGGATTGTTAGACTC
GGACTCGGATTAG

Synonyms

Publications