EWM20991.1, cds9683 (CDS) Nannochloropsis gaditana

Overview
NameEWM20991.1
Unique Namecds9683
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:229739..231151 +

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Properties
Property NameValue
Protein idEWM20991.1
ProductDNA double-strand break repair and VJ recombination XRCC4
Orig transcript idgnl|cribi|Naga_100211g4.3045.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:229739..231151 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006302double-strand break repair
GO:0006310DNA recombination
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR010585DNA_repair_prot_XRCC4
IPR014751XRCC4_C
Homology
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BLAST of EWM20991.1 vs. NCBI_GenBank
Match: gi|585100987|gb|EWM20991.1| (DNA double-strand break repair and VJ recombination XRCC4 [Nannochloropsis gaditana])

HSP 1 Score: 903.664 bits (2334), Expect = 0.000e+0
Identity = 470/470 (100.00%), Postives = 470/470 (100.00%), Query Frame = 0 
Query:    1 MYDTTLRKVSPPATVPGLGHAENGWLPPMDVDSLQQQSPDRSSSPFPATANLRLETGGSLCLHVDVLGDDGQGGPSMGTGGGESFLLQAHRLDAGGGEPRVWGAVVGEDGGRRRRELVALGGVLRRPVGGRALDVAAVEEADGALSLSIKERVEKGKKLVLRTTRLVPALSPGDSLGRALSGAAAQLARAWGQLEEAEREKAVLRGEHEKMQEVLRMRVADKDWVQSELLAKFNLVLNAKRAKIAELQERLRSKGEGGAELEEGDDRRGAGGKPEGARTASKKKRGRGRESAVSQGPTGVVGDEGEDAKEGGGSGRRPFWRRAPVRGGRGSAAGGGAGDGSHGGGEDSGGEGAEEGIWGCHTGHADVLPAPVGTTEVHGGLEELFKARRGPRSGSLTTASTGDGGRGDGRLPESKGDLGEHGAGRGGRTEFLGRREAPGRSAAPRATPGVTEELARTPKKSYGLLDSDSD 470
            MYDTTLRKVSPPATVPGLGHAENGWLPPMDVDSLQQQSPDRSSSPFPATANLRLETGGSLCLHVDVLGDDGQGGPSMGTGGGESFLLQAHRLDAGGGEPRVWGAVVGEDGGRRRRELVALGGVLRRPVGGRALDVAAVEEADGALSLSIKERVEKGKKLVLRTTRLVPALSPGDSLGRALSGAAAQLARAWGQLEEAEREKAVLRGEHEKMQEVLRMRVADKDWVQSELLAKFNLVLNAKRAKIAELQERLRSKGEGGAELEEGDDRRGAGGKPEGARTASKKKRGRGRESAVSQGPTGVVGDEGEDAKEGGGSGRRPFWRRAPVRGGRGSAAGGGAGDGSHGGGEDSGGEGAEEGIWGCHTGHADVLPAPVGTTEVHGGLEELFKARRGPRSGSLTTASTGDGGRGDGRLPESKGDLGEHGAGRGGRTEFLGRREAPGRSAAPRATPGVTEELARTPKKSYGLLDSDSD
Sbjct:    1 MYDTTLRKVSPPATVPGLGHAENGWLPPMDVDSLQQQSPDRSSSPFPATANLRLETGGSLCLHVDVLGDDGQGGPSMGTGGGESFLLQAHRLDAGGGEPRVWGAVVGEDGGRRRRELVALGGVLRRPVGGRALDVAAVEEADGALSLSIKERVEKGKKLVLRTTRLVPALSPGDSLGRALSGAAAQLARAWGQLEEAEREKAVLRGEHEKMQEVLRMRVADKDWVQSELLAKFNLVLNAKRAKIAELQERLRSKGEGGAELEEGDDRRGAGGKPEGARTASKKKRGRGRESAVSQGPTGVVGDEGEDAKEGGGSGRRPFWRRAPVRGGRGSAAGGGAGDGSHGGGEDSGGEGAEEGIWGCHTGHADVLPAPVGTTEVHGGLEELFKARRGPRSGSLTTASTGDGGRGDGRLPESKGDLGEHGAGRGGRTEFLGRREAPGRSAAPRATPGVTEELARTPKKSYGLLDSDSD 470
The following BLAST results are available for this feature:
BLAST of EWM20991.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585100987|gb|EWM20991.1|0.000e+0100.00DNA double-strand break repair and VJ recombinatio... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9714rna9714Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications