rna9710, rna9710 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9710
Unique Name	rna9710
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2187
Alignment location	KK037255.1:210740..213133 +

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Properties


Property Name	Value
Product	Protein of unknown function DUF1997
Orig transcript id	gnl\|cribi\|Naga_100081g27.753.mrna
Orig protein id	gnl\|cribi\|Naga_100081g27.753
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037255.1	supercontig	KK037255.1:210740..213133 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100081g27	gene9429	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9710	rna9710-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21006.1	cds9679	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037255.1:210740..213133+
coding sequence from alignment at KK037255.1:210740..213133+

mRNA sequence

>rna9710 ID=rna9710|Name=rna9710|organism=Nannochloropsis gaditana|type=mRNA|length=2187bp
ATGAGCATCTCTTTACCAAGTAAAATTGAGTGCAAAACATCGGCCTCGCA
TTTACCGTCCCGACATTTTCTGCTAGTTCTCTTTCTTATTTTTGGTTTGG
CACCATCAGGCCGGGGATGGTTGCTTGTGTCTCCAGCGCGGAAGCCCTCT
GAAGGGCTCGTCTTGAGACGGGCGACAACCGAAGCATCCAGCGAATTTGT
CTCATCTTCACGCCCGCCAGGATATCACTTTGTGAGATATGATGGCGCTG
CTATTAGCAAGCTGGCTCTGCGGGAATGGTGGCGGGTTCTTGCCCGGTTA
CGGGACGTAGGGTTGCCTATACTTTCTTGGCTGACCCTTGTGAATGTGGA
CGAGATGACCGGACAGAGCGCGTCAGACGAGCGCCGGCGCCTCCACGCGC
GGAAGCTGCGTGAGATGCTGGTCTCGCTAGGGCCCGTCTTCATCAAAGTC
GGACAAGCCCTCAGCAACCGGCCAGACATCGTAGGGCCAGTCTACGTGAC
GGAGCTTGAGAAGCTGCAGGACACGGTAGGACCTTTCCCCGACCATATTG
CGTACCAGATCATCGAGGAGGAGCTGGGGAGACCCGCCTCGGAGGTCTTC
GATATCGAGTCTTTGCGAGCGTCGGCGTCCCTGTGCCAAGTCTACAAGGC
GCGCGTTCGGGCTACCGGGCAAGTGGTCGCCGTGAAGGTGCAGCGACCCA
ACATGTTCCGGACCGCGGAGGCAGACTTAGCCATCCTTCGCACGGGTGCC
GGCTATTTGCAGCGGGCGCGAAAATTGCGCTCAGATCTCCTGGCTATCGT
GGACGAATTCGGGGAAACGCTGTGGGAGGAGCTTGACTTCATTCACGAGG
GCGAGAACTGCAAGAAGTTCCGGGCCTACTACGCGGCGCCTGTCCTGGAG
GGCATCACGGCGCCGCGCGTGGTGGATGAGCTGACCACGAAGCGCGTGCT
GACGATGGAGTGGATCGAGGGAACCAAGCTGCCCTGGGGAGACGACGCCG
AGCGGCTCATCGGACTCGGCTTGGAATGCTCCACCTACCAGTTGCTCGAG
AAGGGCTTCCTCCATGCTGACCCTCACGCCGGCAATCTGCTGCGGACGAC
GAGTGGGGACTTAGCGTACCTGGACCACGGCATGTTGACGCAAATCACGG
AGGAGCAGCGCTTCGCCCTGATCAAGGCCGTCTCCTTTCTCTACAACAAG
GAGTTTGACAAGCTGGCGAGCTCCTTCGTCGACCTGGGCTTTGTTTCGCG
GGAGGGAGACCCCGCGGCCCTGGAGGGCTTCGGCCCGGCCCTGCGCGCAG
CTTTCACTAACGCCTCCACCTCGGGCGACAAGAGTCTCATGGACCTGAAT
TTCGCGCGCCTCTCCGCCAACATCCAGGACGTGGCCTACCGCTTTCCCGT
CCGCATCCCTGCCTACTGGTCGCTCGTGATCAGGACCCTGGCCATCTGCG
AAGGGACGGCGCTCTCCTATAATCCGCGCTTCAAAGTCATTCAGGCCGTG
TACCCCTTCATTCTCAAGTACCTGCTCCAATCCTCGGATACGCCCGCCCT
CCGCTTGGCCCTCCAGGAGATCTTGCTCGTGCCCGTGGAGGAGCCCCCCG
ACCAGTGGGGCGACGGAATCACCACCCGCCCAGGCAGGGTGCGTTACCGC
ATCCGGTGGAACCGGCTGGAGCGTATGCTGGAGGCCTCGTCCCGGCCCAT
GACGGCCATGCTCAGTCTGGAGGCGGGGTCGGCGCCGGAAACGAGGGCAG
AGGACAGCCTGCTGAGCAATCGCGAGACGCTGGACCTGATCTTTACCTAC
GTCCTCTCGGACAGCGGGGCCTTCTTGCGAGAAGCGCTCATCGAAGACAT
TTTGGGCGCGCTGGACGATGCCAATTTGGTGGTAATGCGTGGCCTCTCTC
TCCTCAGCGGGGGTCTCATCCCTCCGCCGGCCTCGCTCCCTGACCGCGAC
CGCCTCGCCATCGTCGGCACCCTGCTGGGCAACCTGAGGAGCCTGGCCGC
GGAGCAGGGACTCTCCTCCCTTCTGCCGTCTTCCTCCCCCAACCCATCGG
GGCCCTCGCCCGTGCAGAGCAAGGCGCTGGCCGACCTCTCTCGGCAGGTC
CTGGCGGCCTACGCGGAGCGGCAGGCGACCAAGGGGAGCAAAGTAGGTAA
GAGAAGGCAGATGTCTGGTCCTTGTTGTATAGGGTAA

protein sequence of rna9710

>rna9710-protein ID=rna9710-protein|Name=rna9710|organism=Nannochloropsis gaditana|type=polypeptide|length=558bp
MVIPRYHHPTRIDMVAYGKRAVFLELVIVLQLCLVYVNLPVEGFLLRGHG
ICVSFKCQHKRLPLPYQVLSTHSFFGTHGAAGATENNDVQQNQHCPITDE
GPLKSVRQAVRVLNSVLHIMFSAGDVFGMYSSPSASVLAPTFKNKRGGAS
RADSRWALGRPGRRALESREHRDTSEKSVAKEDIAEEGSEIQKFVSQRDL
NSWDVWQGVDQNRHRHSEDERQRRQQRRRKKMTLSTRYTCGVSVANASRL
EEYMGLPFDQYSLLDQSFISRVEKGKENPQGNVFRFMVPANELVGLHTVP
IVDVRVDVDMSKRQLAITSISSRFVSRATDGTILGTQAVNVLTNNSLAFS
TRIKWNRPATTKKYSERVQKGMPIADNLPRDVPYFPLGSPPYIEEESIAT
DEISRVSGGNFARLRKRIFSRARLVDDQVVQNATRFQSRDANTQLTDQDA
EVQQKLSCRAHVEISVEVPPPFSLLPGLILRQGASLILSTLVGTLVNRFM
ELLIEDYQSWQDQESRVASAGGLIGYNPQRFDERTIEVSESDDDDNGSAL
LPEPEYMI

mRNA from alignment at KK037255.1:210740..213133+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9710 ID=rna9710|Name=rna9710|organism=Nannochloropsis gaditana|type=mRNA|length=2394bp|location=Sequence derived from alignment at KK037255.1:210740..213133+ (Nannochloropsis gaditana)
ATTTTCATGGTTATTGAAACATCATCAGGCGCGGGAAAGAGGCTGTCGAA
CCGCCAAGGACCTTCGTGTATCCTAAGCCTCTAACTCGACCCCTCTTTTA
CCTTCTGCTATTGCAGGGTCTCCTACGCGGCTCCAGCTCTCTCACCCTCC
AGTCTTGTGCTCTTGGCAAAGATAAAGCGCTTGCGAACCAATCAACTTTG
ATATCTGTTGTGcatgccgcctcctcctacagggaggggcacgtcCAAGT
TTCAGACAGCCTGCGCATGGGAGATGCAAAACAGCCTGAAATGTATGGAA
ACAGGTGACAAGGACAAATGCGCGGACATGATCGAAATGTACAAGGACTG
CagaaaagaggagcaggagaaagtgagaaaggagaggagtggTACAGGAG
GATTTAAATGGTAATACCGAGATATCATCATCCAACGAGGATCGACATGG
TGGCGTACGGAAAACGTGCTGTATTTCTCGAGCTAGTGATCGTTCTGCAG
CTCTGTCTGGTGTATGTCAACTTGCCAGTCGAAGGCTTCCTCTTGCGAGG
ACATGGTATCTGCGTTTCCTTCAAATGTCAGCACAAACGCTTGCCGTTGC
CATATCAAGTGCTATCCACGCATTCCTTTTTCGGAACACATGGTGCAGCG
GGAGCCACAGAGAACAACGATGTTCAACAAAATCAACACTGTCCTATCAC
TGATGAAGGGCCTCTAAAATCTGTGCGACAAGCTGTCAGGGTTTTGAATA
GTGTCCTTCACATAATGTTCTCGGCCGGTGATGTCTTTGGTATGTACTCT
TCACCCTCTGCAAGTGTTCTTGCGCCGACTTTTAAAAATAAGCGCGGTGG
AGCAAGCAGAGCGGACTCTAGATGGGCCCTTGGTCGTCCAGGCCGAAGGG
CGTTGGAAAGTAGAGAACACCGTGACACGTCCGAGAAAAGCGTCGCAAAG
GAGGACAtagcggaggaaggatcAGAAATCCAGAAGTTTGTGAGTCAGCG
CGACTTAAACTCATGGGACGTATGGCAAGGGGTAGACCAAAATCGTCATC
GGCACTCAGAAGATGAACGTCAGAGGCGTCAACAGCGTAGGCGCAAAAAG
ATGACTTTATCGACACGGTATACATGTGGAGTGAGCGTAGCCAATGCCTC
CCGTCTCGAAGAGTATATGGGCCTTCCATTCGACCAATACTCTCTTTTGG
ATCAGTCATTTATTTCCCGCGTGGAAAAGGGCAAAGAGAACCCCCAAGGT
AATGTTTTCCGCTTCATGGTTCCCGCAAACGAGTTGGTGGGCCTTCACAC
AGTACCCATCGTTGATGTACGTGTCGACGTTGACATGAGCAAGCGCCAGC
TTGCTATCACCTCAATTTCCTCGCGTTTCGTCTCCCGAGCAACGGATGGG
ACAATTTTAGGCACGCAAGCTGTGAACGTCCTCACCAATAATTCACTTGC
CTTCTCGACACGCATAAAATGGAATCGCCCAGCTACCACGAAGAAGTATT
CTGAGCGCGTGCAGAAAGGAATGCCAATAGCAGATAATCTCCCTCGTGAT
GTTCCATATTTTCCGCTGGGGTCTCCCCCCTACATCGAAGAGGAGTCGAT
AGCAACAGACGAAATTTCTCGTGTTTCAGGAGGAAATTTCGCACGTCTAC
GAAAACGCATTTTTTCTCGTGCCAGGCTTGTCGATGATCAAGTTGTGCAA
AACGCGACTCGATTTCAAAGTAGAGATGCAAATACTCAATTGACAGACCA
AGATGCAGAGGTACAACAGAAATTGTCTTGTAGGGCTCATGTGGAGATCA
GCGTAGAAGtgccgccgcctttttctctcctACCTGGATTAATTTTACGT
CAGGGTGCATCTCTCATCCTGTCCACGTTGGTCGGTACACTTGTCAATCG
GTTCATGGAGCTTCTTATTGAAGATTACCAATCATGGCAAGATCAGGAAA
GTCGTGTAGCTAGTGCAGGAGGCTTGATCGGCTACAATCCTCAGCGATTT
GATGAGAGAACAATTGAGGTATCTGAATCGGATGATGATGATAATGGATC
CGCCTTACTTCCTGAGCCCGAGTACATGATTTAAGAGGCTTCAGTATGCT
GGTAAATCTCAAAGGTGTACACAGTTACGATAGGTAAATGCTAGTTTTCC
ATACAAAATAAGTCCTGACGCACAAGGCTGATGGAAACAATTCAATTGAC
ACATCAAATGGTAAATCTATAAAATTGCTCGCCTTCCATTTTCGTAAACT
AATCTTGAAGAGGGCAAGCTTGAAGTTTTATTTATCTCTATCACGCGAAA
AACGAGGAAAATCGCAGTAGACCTCTTGTAAATTTATGAAAGTGTAACAT
TGATCTTTGAGTTCCATgccgctcctctttcctgcctGTGTCGT

Coding sequence (CDS) from alignment at KK037255.1:210740..213133+

>rna9710 ID=rna9710|Name=rna9710|organism=Nannochloropsis gaditana|type=CDS|length=1677bp|location=Sequence derived from alignment at KK037255.1:210740..213133+ (Nannochloropsis gaditana)
ATGGTAATACCGAGATATCATCATCCAACGAGGATCGACATGGTGGCGTA
CGGAAAACGTGCTGTATTTCTCGAGCTAGTGATCGTTCTGCAGCTCTGTC
TGGTGTATGTCAACTTGCCAGTCGAAGGCTTCCTCTTGCGAGGACATGGT
ATCTGCGTTTCCTTCAAATGTCAGCACAAACGCTTGCCGTTGCCATATCA
AGTGCTATCCACGCATTCCTTTTTCGGAACACATGGTGCAGCGGGAGCCA
CAGAGAACAACGATGTTCAACAAAATCAACACTGTCCTATCACTGATGAA
GGGCCTCTAAAATCTGTGCGACAAGCTGTCAGGGTTTTGAATAGTGTCCT
TCACATAATGTTCTCGGCCGGTGATGTCTTTGGTATGTACTCTTCACCCT
CTGCAAGTGTTCTTGCGCCGACTTTTAAAAATAAGCGCGGTGGAGCAAGC
AGAGCGGACTCTAGATGGGCCCTTGGTCGTCCAGGCCGAAGGGCGTTGGA
AAGTAGAGAACACCGTGACACGTCCGAGAAAAGCGTCGCAAAGGAGGACA
tagcggaggaaggatcAGAAATCCAGAAGTTTGTGAGTCAGCGCGACTTA
AACTCATGGGACGTATGGCAAGGGGTAGACCAAAATCGTCATCGGCACTC
AGAAGATGAACGTCAGAGGCGTCAACAGCGTAGGCGCAAAAAGATGACTT
TATCGACACGGTATACATGTGGAGTGAGCGTAGCCAATGCCTCCCGTCTC
GAAGAGTATATGGGCCTTCCATTCGACCAATACTCTCTTTTGGATCAGTC
ATTTATTTCCCGCGTGGAAAAGGGCAAAGAGAACCCCCAAGGTAATGTTT
TCCGCTTCATGGTTCCCGCAAACGAGTTGGTGGGCCTTCACACAGTACCC
ATCGTTGATGTACGTGTCGACGTTGACATGAGCAAGCGCCAGCTTGCTAT
CACCTCAATTTCCTCGCGTTTCGTCTCCCGAGCAACGGATGGGACAATTT
TAGGCACGCAAGCTGTGAACGTCCTCACCAATAATTCACTTGCCTTCTCG
ACACGCATAAAATGGAATCGCCCAGCTACCACGAAGAAGTATTCTGAGCG
CGTGCAGAAAGGAATGCCAATAGCAGATAATCTCCCTCGTGATGTTCCAT
ATTTTCCGCTGGGGTCTCCCCCCTACATCGAAGAGGAGTCGATAGCAACA
GACGAAATTTCTCGTGTTTCAGGAGGAAATTTCGCACGTCTACGAAAACG
CATTTTTTCTCGTGCCAGGCTTGTCGATGATCAAGTTGTGCAAAACGCGA
CTCGATTTCAAAGTAGAGATGCAAATACTCAATTGACAGACCAAGATGCA
GAGGTACAACAGAAATTGTCTTGTAGGGCTCATGTGGAGATCAGCGTAGA
AGtgccgccgcctttttctctcctACCTGGATTAATTTTACGTCAGGGTG
CATCTCTCATCCTGTCCACGTTGGTCGGTACACTTGTCAATCGGTTCATG
GAGCTTCTTATTGAAGATTACCAATCATGGCAAGATCAGGAAAGTCGTGT
AGCTAGTGCAGGAGGCTTGATCGGCTACAATCCTCAGCGATTTGATGAGA
GAACAATTGAGGTATCTGAATCGGATGATGATGATAATGGATCCGCCTTA
CTTCCTGAGCCCGAGTACATGATTTAA

Synonyms

Publications