rna9708, rna9708 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9708
Unique Name	rna9708
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3355
Alignment location	KK037255.1:205499..207487 +

Link to JBrowse

Properties


Property Name	Value
Product	wd40 repeat-containing protein
Orig transcript id	gnl\|cribi\|Naga_100081g25.766.mrna
Orig protein id	gnl\|cribi\|Naga_100081g25.766
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037255.1	supercontig	KK037255.1:205499..207487 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100081g25	gene9427	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9708	rna9708-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21019.1	cds9677	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037255.1:205499..207487+
coding sequence from alignment at KK037255.1:205499..207487+

mRNA sequence

>rna9708 ID=rna9708|Name=rna9708|organism=Nannochloropsis gaditana|type=mRNA|length=3355bp
ACGGCGCTGACCATCCAGTTGGGCTTTCCCGGCAAACCACTGAATCGCTT
CAGGACCCTTGCCGGCGTCATTATTCCACTGGGAACATCATTACCCGAGG
CGGGAAGTAAGGGGCATTCCCACAGGTTGAGCACGCGGTCGTTCCCAACG
GACGCCAAGATAAAGGGACCAGACCTCCCTGACCGTCCCCTCACACCCGA
AGCTCCTTTTCCCGGCAAGTCTGCACCCTGCACATCCAAGAAAGAGACGC
CAGCCACGCTTGTCGAATGTCCCCCCTCGAGGAGGGCGACCATGCTCCCT
TCCACGAAGTCGTACACGCCTACTTCGCCGTTGCCCTTGGCAACTGCTAC
GAAGCGCCCGTCCGCTGAGAAAGACAGGCCATTAATGTAGGGGGGATTGA
AAAGCTGACAAGATGAGACTGCCGACGGAGCAGTGGTGGGATCATCGGCA
TCAGCGTCTTTTGCTCCCGCAGCACTCAGCGATCCCGCCTCCACGGATAT
GGCTCGGCACCCCCTCTGTCCCCGCGAAGAGTCCCACAGGCCCAGGGTAC
TCGTGCTGTGAAAACCACAGGCCAGGTCCCACTGCACGCGTGGCCGAAAC
GCTACACACGTACAAAAATCTTCCCCTCCCGGGAATTGAAAGGTCCGTAT
GGGCTTTGGAGGGCGAAGGCTGGCGTCTAGTAGGGTGACCTTCCCGCTGT
CGTCAGCTACTGCTACCTTCTTGCTGCCGCGTCGAGCTTGCACCGAGATC
TGGTTTATCATATCGTCAGCAATGTCAGGCAGACTTCCCACTGCATTTTT
GACGACTATACCTGGAGCGCGTAGGTCCAATTCGTAAATGGAAGTTTTTG
TCGCAGCGAAGAGGCGATCCTTGTCAAGAAAGGCGACAGCGCTTATCCCC
TGATTGTCGTCGAACATACCCGTGTAACATCGTATGGCCCGCCCCGCAGC
AACATCCCATATTCGGCAGGTAGAATCTTCCCCCCCTGATGCCAGCATGG
ATGCGCCCATGACCGCTGATCCGTTTTCTTGAGGCCCAAGCAAATCCAAA
CTCAGAACCTCCCCTTTATGACCCGTGAAACATGACCAGTGAGAGTCATC
CAATGCGAATGACGGTCGGTTTCGGGTAGTGCACCCATTACGATATTCGA
CCTCGTCCATTCTCTCCCACGGGTCTTGATAGGATAAATTCAGCGCAAGT
TTTTGATGTCCATTTAGAACGCATGAGCAATATGTTCCGACTGCTCTTGT
CCTCGACCCTCAACCTTGAAGATGTAAGTTTACACCGTACCAAATTGGTC
AACTGAGGAATTAACGAGCACGCGCACCTATGTAAAGGTCGTGTAGCACA
GCGTCAGCCAAAAAGGTATAAAAAGGGCCGGTCGTGTGTTTTTTCCTCCC
CGCCTTTCCTCTCGTTGGCAGATCGAGCACCGTCGTTGCTCTCTCCCCGA
GCCTGCTTGCGTGGGCGTGCCCTGTCCTCAGCCGAGTCGCACTTTCGTGC
AAGTACAATCCATTGCCACACCTAAAGAAATCAGACGACGCTTCGCTTGC
ATTGGGCATAAGATACGGGGATGCTTTCCCTGGGGGGTCTTTGGTTCTTT
TCGCGCTATCCTTGCTCTCCCTCGACCCGGCGCCGCGTCATTCCGCGCAC
CCGGGCCGCTTCCCCGCAAAGTGTTGCGCATCACTTGCCCCTGTACATTC
AATCACACGCAGGGTGCTATGACTTCGACCATTCCTAAATTCATGAAGTT
GTTGCCTCTGTACATTTAAGTGTGTGCAAGTTGTTAGGGTCTTGTTTGGC
TGCGTCGTGGTGGCTGAATGAAAGAAAATCTAGAACCATTTGCTCAATCA
CATTCCCTCATCTATAAAGACAGGCTATTGTCAGTCAGTCTCACGCTCCA
CCTTAGAGCACTTGTGGAGCGTATTCTGAGTGCTTGCGTCGGGCAGGTAC
TTTGTCGCAGACACCTCTTTTACCGAGGTCCTACTCTGTTTCTCACCTCT
CCAGTCCCGGCAACGGGGGCGCGGATTCTCATCTGAAGCGCCCTTTTCAA
CGCCATGGGGGGGAGAATCGGAAACGAAAAGCAAGGGAGGAGAATATCCC
GCCCACCTCGTGTGACTCGTCTCCTTATATCTCTCCCTGCCGCAGCCATG
ATAGCTCGGAAGCAACGGACGAGCCCGCATCCTTCTGGCTGGTGGAGGCC
GCGGAAGGGGCCTCCACCCCCGTAAGGGCCCCTGAAACGGCCGCCTGCTC
GGCTGTCTCCTCACTCAAGCGCCGGAGGCACTCCTACCACAATCGGTCCG
CTTCTCCTTCTCCTGCGCGTGGCGATAACTACGGGACGCATGATGGGAAA
GAGATTGACGCGAAAAAGAACGGCGAAGATGACGAGGAGGGCGCCATGAG
GCGAGAAGTAGATGATAGCCTCCGGGGGGAAGAGAACTGGGACCATCCTG
CGAGCATGAACGCGATGTGCCGGCGCACTCTGAAGATTGAATACTGGGAC
CGGTCGAGAGAGTGCAAGGAGAGAAAGTGGGATCACATGGACTACATTGA
TGCAACGTACGCTTCCCGGGAGGAGTGGATCCTCCAATCGGTGCTGCCGC
GCGACGAAATCGTCCTGGAGGAGAACAAGTTCCCGTACAACACTCCCAAG
GGCATTCGGCATATGACATTGTGGGCGCGGCGAGAGCTGTCGCTAGAGGA
GGTGGAGTCCTACATGATAGACTGGATCGAGCGAGAGCGTCCTGGCGTGC
GGCGCTGGAACTTGGACGAGAACGCGTCACGTTCCATTCAAGTCTACCAC
GTCCACATTTACACACAGGAGGTGCCTGACGAGGAAGTGGGCCCCAGTCC
CTCTCGAGGAGACGCAGAGGACTTGGACGACCATATCCTGAGCGAGGATG
CGAAAAACGGAGAGGAATCTGACCCTGATGATGACTTGGAGCACAGGAGC
CGACCAAGACACAAAGCGGGAAGTCTCGGCGAAAGGAGAGAGTGCTGCCT
TATAGATGGGAAAGAAAACCGTATGCAAGCGCAGACGATAATGTCAGGCG
ACGAAACAGGTGTCTAGGCGTGCTCCACACAAATACTTTAAAGCGATGAG
AGAGGTCCTTCAGGTCAAGATACAGGTGCCTGAGGCAATGACCGTGCTGG
TCATTCGTAAATGAGTGAAATATAATGTAGAGCGAGTCGTGAAAACGCAT
GGCATTTTGGCTGGAGATAGCTTTCATAATGCGGGTAGAGCGACGTTTTT
GAATAGTAAAGAAAGCAGAGTAAGCCTGAGGTTGAAATGTGGAATTAAAA
AATAAAAGTTGATAGCGATGAAGGTGTTCGAAAGCATATTTAGTGATTTT
CTTGC

protein sequence of rna9708

>rna9708-protein ID=rna9708-protein|Name=rna9708|organism=Nannochloropsis gaditana|type=polypeptide|length=424bp
MDEVEYRNGCTTRNRPSFALDDSHWSCFTGHKGEVLSLDLLGPQENGSAV
MGASMLASGGEDSTCRIWDVAAGRAIRCYTGMFDDNQGISAVAFLDKDRL
FAATKTSIYELDLRAPGIVVKNAVGSLPDIADDMINQISVQARRGSKKVA
VADDSGKVTLLDASLRPPKPIRTFQFPGGEDFCTCVAFRPRVQWDLACGF
HSTSTLGLWDSSRGQRGCRAISVEAGSLSAAGAKDADADDPTTAPSAVSS
CQLFNPPYINGLSFSADGRFVAVAKGNGEVGVYDFVEGSMVALLEGGHST
SVAGVSFLDVQGADLPGKGASGVRGRSGRSGPFILASVGNDRVLNLWECP
LLPASGNDVPSGIMTPARVLKRFSGLPGKPNWMVSAVRPCQEAREAGVVC
FQIFVATTSAHIAVLNTCLVKQEQ

mRNA from alignment at KK037255.1:205499..207487+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9708 ID=rna9708|Name=rna9708|organism=Nannochloropsis gaditana|type=mRNA|length=1989bp|location=Sequence derived from alignment at KK037255.1:205499..207487+ (Nannochloropsis gaditana)
ACCCCCCAGGGAAAGCATCCCCGTATCTTATGCCCAATGCAAGCGAAGCG
TCGTCTGATTTCTTTAGGTGTGGCAATGGATTGTACTTGCACGAAAGTGC
GACTCGGCTGAGGACAGGGCACGCCCACGCAAGCAGGCTCGGGGAGAGAG
CAACGACGGTGCTCGATCTGCCAacgagaggaaaggcggggaggaaaaaa
caCACGACCGGCCCTTTTTATACCTTTTTGGCTGACGCTGTGCTACACGA
CCTTTACATAGGTGCGCGTGCTCGTTAATTCCTCAGTTGACCAATTTGGT
ACGGTGTAAACTTACATCTTCAAGGTTGAGGGTCGAGGACAAGAGCAGTC
GGAACATATTGCTCATGCGTTCTAAATGGACATCAAAAACTTGCGCTGAA
TTTATCCTATCAAGACCCGTGGGAGAGAATGGACGAGGTCGAATATCGTA
ATGGGTGCACTACCCGAAACCGACCGTCATTCGCATTGGATGACTCTCAC
TGGTCATGTTTCACGGGTCATAAAGGGGAGGTTCTGAGTTTGGATTTGCT
TGGGCCTCAAGAAAACGGATCAGCGGTCATGGGCGCATCCATGCTGGCAT
cagggggggaagattcTACCTGCCGAATATGGGATGTTGCTGCGGGGCGG
GCCATACGATGTTACACGGGTATGTTCGACGACAATCAGGGGATAAGCGC
TGTCGCCTTTCTTGACAAGGATCGCCTCTTCGCTGCGACAAAAACTTCCA
TTTACGAATTGGACCTACGCGCTCCAGGTATAGTCGTCAAAAATGCAGTG
GGAAGTCTGCCTGACATTGCTGACGATATGATAAACCAGATCTCGGTGCA
AGCTCGACGCGGCAGCAAGAAGGTAGCAGTAGCTGACGACAGCGGGAAGG
TCACCCTACTAGACGCCAGCCTTCGCCCTCCAAAGCCCATACGGACCTTT
CAATTcccgggaggggaagatttTTGTACGTGTGTAGCGTTTCGGCCACG
CGTGCAGTGGGACCTGGCCTGTGGTTTTCACAGCACGAGTACCCTGGGCC
TGTGGGACTCTTCGCGGGGACAGAGGGGGTGCCGAGCCATATCCGTGGAG
GCGGGATCGCTGAGTGCTGCGGGAGCAAAAGACGCTGATGCCGATGATCC
CACCACTGCTCCGTCGGCAGTCTCATCTTGTCAGCTTTTCAATCCCCCCT
ACATTAATGGCCTGTCTTTCTCAGCGGACGGGCGCTTCGTAGCAGTTGCC
AAGGGCAACGGCGAAGTAGGCGTGTACGACTTCGTGGAAGGGAGCAtggt
cgccctcctcgaggGGGGACATTCGACAAGCGTGGCTGGCGTCTCTTTCT
TGGATGTGCAGGGTGCAGACTTGCCGGGAAAAGGAGCTTCGGGTGTGAGG
GGACGGTCAGGGAGGTCTGGTCCCTTTATCTTGGCGTCCGTTGGGAACGA
CCGCGTGCTCAACCTGTGGGAATGCCCCTTACTTCCCGCCTCGGGTAATG
ATGTTCCCAGTGGAATAATGACGCCGGCAAGGGTCCTGAAGCGATTCAGT
GGTTTGCCGGGAAAGCCCAACTGGATGGTCAGCGCCGTCCGCCCCTGTCA
GGAGGCgagagaggcgggggtggtTTGCTTCCAGATTTTtgtggccacca
cctccgcgcACATAGCTGTTCTTAACACATGTCTAGTCAAGCAAGAGCAG
TAAAGAAAAAGGCAGTCTGCTGGCCCATGCACCGGCTTGCATGTGTCCAT
TGAAAGCCTGTGTCGTCACACCCACAGAAAGCTCAGACCCCCAGACCAAT
CACCGTGGTCTCGTTTTACTACCTCAGAAACTACGCTCTTTTTATGACCG
CATTTTAATTCTTGTACCTGAGTACTCTAGCATCCGACACAGTGCTGTCA
AAAATTGGCATGATCCATCTGAAGCTGCGGAACATTTCATGTCACGTTTC
CGTCATCAACATTGATTACCCTATACAACAAGGACCAGA

Coding sequence (CDS) from alignment at KK037255.1:205499..207487+

>rna9708 ID=rna9708|Name=rna9708|organism=Nannochloropsis gaditana|type=CDS|length=1275bp|location=Sequence derived from alignment at KK037255.1:205499..207487+ (Nannochloropsis gaditana)
ATGGACGAGGTCGAATATCGTAATGGGTGCACTACCCGAAACCGACCGTC
ATTCGCATTGGATGACTCTCACTGGTCATGTTTCACGGGTCATAAAGGGG
AGGTTCTGAGTTTGGATTTGCTTGGGCCTCAAGAAAACGGATCAGCGGTC
ATGGGCGCATCCATGCTGGCATcagggggggaagattcTACCTGCCGAAT
ATGGGATGTTGCTGCGGGGCGGGCCATACGATGTTACACGGGTATGTTCG
ACGACAATCAGGGGATAAGCGCTGTCGCCTTTCTTGACAAGGATCGCCTC
TTCGCTGCGACAAAAACTTCCATTTACGAATTGGACCTACGCGCTCCAGG
TATAGTCGTCAAAAATGCAGTGGGAAGTCTGCCTGACATTGCTGACGATA
TGATAAACCAGATCTCGGTGCAAGCTCGACGCGGCAGCAAGAAGGTAGCA
GTAGCTGACGACAGCGGGAAGGTCACCCTACTAGACGCCAGCCTTCGCCC
TCCAAAGCCCATACGGACCTTTCAATTcccgggaggggaagatttTTGTA
CGTGTGTAGCGTTTCGGCCACGCGTGCAGTGGGACCTGGCCTGTGGTTTT
CACAGCACGAGTACCCTGGGCCTGTGGGACTCTTCGCGGGGACAGAGGGG
GTGCCGAGCCATATCCGTGGAGGCGGGATCGCTGAGTGCTGCGGGAGCAA
AAGACGCTGATGCCGATGATCCCACCACTGCTCCGTCGGCAGTCTCATCT
TGTCAGCTTTTCAATCCCCCCTACATTAATGGCCTGTCTTTCTCAGCGGA
CGGGCGCTTCGTAGCAGTTGCCAAGGGCAACGGCGAAGTAGGCGTGTACG
ACTTCGTGGAAGGGAGCAtggtcgccctcctcgaggGGGGACATTCGACA
AGCGTGGCTGGCGTCTCTTTCTTGGATGTGCAGGGTGCAGACTTGCCGGG
AAAAGGAGCTTCGGGTGTGAGGGGACGGTCAGGGAGGTCTGGTCCCTTTA
TCTTGGCGTCCGTTGGGAACGACCGCGTGCTCAACCTGTGGGAATGCCCC
TTACTTCCCGCCTCGGGTAATGATGTTCCCAGTGGAATAATGACGCCGGC
AAGGGTCCTGAAGCGATTCAGTGGTTTGCCGGGAAAGCCCAACTGGATGG
TCAGCGCCGTCCGCCCCTGTCAGGAGGCgagagaggcgggggtggtTTGC
TTCCAGATTTTtgtggccaccacctccgcgcACATAGCTGTTCTTAACAC
ATGTCTAGTCAAGCAAGAGCAGTAA

Synonyms

Publications