rna9703, rna9703 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9703
Unique Name	rna9703
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2757
Alignment location	KK037255.1:195214..196764 +

Link to JBrowse

Properties


Property Name	Value
Product	conserved c2h2 zinc finger protein
Orig transcript id	gnl\|cribi\|Naga_100081g19.749.mrna
Orig protein id	gnl\|cribi\|Naga_100081g19.749
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037255.1	supercontig	KK037255.1:195214..196764 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100081g19	gene9423	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9703	rna9703-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21002.1	cds9672	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037255.1:195214..196764+
coding sequence from alignment at KK037255.1:195214..196764+

mRNA sequence

>rna9703 ID=rna9703|Name=rna9703|organism=Nannochloropsis gaditana|type=mRNA|length=2757bp
ATGGTATTGGAGGAGGAGCGGCGGCGAGAAGGGATAGAATCAATGATTTT
GGAGACGGTGACTGGCCCGATGGAGCAGGTTGCCCTCTGTGTTCGCAACG
CCCTGGAGCGCGGATGGGAGAAATCGCTGCCAAGTAGCTTGGCGGAGTTT
CGGGAACGGAGGGAGGAGGAGATAGAGCGCGTGTGCAGTCGGTACTACTC
TGAATTTCTAGGGTCCGTGCAAGAGCTTCTGGCTGCCAAAAGCAGATCCG
CTGCTCTGAAAGAAGAGATTTCTCTCTTCGACGAGGATATCAGACGCACG
GGCCAAGACATGCTCAAGATAGGCAACGAGCTCCAGCGGCAGAAGACAGA
CCAGCGGCACATCCAGATCGCCGCGGTGGTAGCCGCACAGTGCCACGACC
TCACCTTGCTACTGGCCAAAGCCAAGCAGCAAATCGAGGAAGGGCGGCAC
TATCCGGCTCTGCGCACCCTGGACAGCATCAGCCAACAGCTGAGGGTGGC
TGTGCAGCACCCTTTTGTCGATCGCGTGGAGTCGTGGCTCCCCGCGCTGG
CCGTCCGCCTGAAGTCCTCGGCCCTGCAGGACGTGTCCGACTGGCTGGTG
GCCATTCGGGGCAAGTCGACCAGCATCGGCAAGGGCGTGTTGCGCAAGTG
CGTGGGCTACCTGACCGGCCAGGCCGCATGCGCAGGAACCGGCTTGGGGG
GCTTTCTGGGGGCCCCGGCCCTCGGGGCGTTGGATGCGCGGTCACTGGCC
CCGACGCCGGCCGAGCTGCTGCTGCGGCAAACGAATCACGTCACGAGCTT
CTCCGCCTGGGTGCAGGACGAGCTACTACAGGCGCTGCCCTACTTTCGGC
AGGCCCCCGCAGGAGACGAGCAGCATGCCCTCTCCTCCCTCGCCGAGAGC
CTGGGTCCGCTGCACCGAGCCCTTCACATCCACGCCCATCTGGGGGCCCT
GGATGAGCTCCAACTCTTCTACGTCAATAACCGCCTGCCGCAAGCCTCGC
TGCCCTCGGGAGGCTCGCTCCCTGCCCAATCCTCCTCGGCCGAAGCCACC
GAGCGGGCACCCAGCCCGGGGGAAGGGAGGGAGGGGCCGGACGAGCGGGC
CGCCCAACTGCAGGAGGCCATGGCTTACTACGCCGGCTTCTTCGTCACCG
AGCACGCGGCCATTCGGTCCACAGAGCACCCAGGGGGCTTGATCCCTGTC
TTCAGACTGGAGGAGGTGTGGCGCGGGATCCAGCGGGACGTGTGCGCCCA
GCTGGAGGCCGTGATAGCGGCCACGGTCGCCTCGCCTGAGGCCCGCTCTC
CCGCCCTCCTCCTGCAGCTTAAGCAGACAGCCTTGCTCCTGGCCTCCACA
CTGGGGGAAGACTGTTTCCGCTTTGACACCCGCCCTCTGATGGAGACACT
GCGAGGCCCCTTGCGCGAAGGATTACAGGCCGCGGAGGAGCTCTCTGTGG
ATGCCAGGTGTCGGCTGGTGCTGGAGCAGCAGGAGTTCCAGCCCTTGAGC
GTGACTTGCGAGGAAGAGTATCGGTCTCTGGTTCTTCCCTACGGCCTGGA
CTGGGAGAACGCGTACGTGCTGGAGGGCGGCGCGGACGTGGGGGAGCAAG
GGGAGGGGCGGAGAGGCGAGTTGGAGGAGTCGAGCACGGTGAGGAGTGCA
ATGCGCGGCTATCGCACCGGAAGAACTCCCAAGAGAGGAGGCACGAAGGT
GGGTAGAGGGGCCCGGTACCCCCGGGCCTTTCCTTTCTCTGTAATGGTCC
CTCGCCTCTCCAGGGAGCTCTACCGCACCGCGTCGCTCTGCTTTCTGTAC
GGGGTCCAGCTTCAGCATCCCGCGGCCATGGAGACGACCTTGCTTGTATT
GATAGAGAAGGGGTTGGCCACCGTTCGCCGGCTCCTGGACGAGGAGCTGG
CGGGCGCCGGTGGCAAGGCGGCGGACATCCCCATCTCCAAGGCCTGCCAG
GTCTCCGTCGACGCCATGGCCCTGGCCCGTGTGACCACAGCCTTCGAGGC
GATGCTGATCTCTGCAGCGGCGCATTTTTTCAACTCGACGGAGGCCGCGT
CCAAGAGTATCCCAGCAATACTGGGGGCAGGGCGCCGGGCGCTGGAGGAT
ACAAGCATTGCTGCACAGCACCTGGTGTATGAGCTGATCCAGAAAAAGAT
TGACGAGCTGCTGGAGGGAATGTGCTTCATCGAATGGGAGCCCACCAAGC
TGGCGAGCGGGGCACGTTCATACGTTGAAGATGTCGTCAGCTACCTGCAG
GTGACTTTCATGTGCCTCACGTACATGCCGAAGGAAGCCAGGGACGGACT
GCATTTTGCGTCCTGCACTCACATCCACGCGGTAATGTTGGCCACGCTTC
TGGACCCCCACAAGGTTCGGGCGGTCAATACGACAGGACTATATAATCTG
AGCTTGGATGTGGCTGCATTGGAAGCCTTTGCTGACGCTTGTGGTGTCCT
CCAGCTCCGCGAGTGCTTCGCCGAGCTCCATCAGACCCTAGGCGCCCTCT
TGCATCAAGACATTCACACTCTCATGCTCGATGCCAGTCTTCGCGAAGGG
GTGTATCCTAAAATCCGAACAGCTCATCTTGTGAATATTCTGGAAAGGTA
CAAACCACTGGGACTCCTGGCCCAGGTAAAGAACCAACAAGGAGGCGCAG
GCCATGGCGGGGGGGGAAGGGGTGTTGATCTTCCGTATCTGGACAAAAAA
AAGGCTGCTGAGTACATAAAATCTCTTCGTAAACAATTACAAGAGGAACG
AGAATAA

protein sequence of rna9703

>rna9703-protein ID=rna9703-protein|Name=rna9703|organism=Nannochloropsis gaditana|type=polypeptide|length=469bp
MEPREAPGDPRGSHRAGMGQQKVSFFQSLIRHLVLDLADCCPPNGAQERH
QFKSKDELDAYLRVAHESVAIGRETLTAVAGQQEALDRSEAVVDSNRYVI
EKSARTLRGMTWWGSLRNYFSEEPEAPRPRTSTWLADRRAGLRGPGQQAG
ERTEAHSSDPPLWRDQPRDGCSNPVKDERQELFARKVNGETADARLKRAH
VAGQGPQSLSEVARMQDEYLESLGKSLDEQRGIGRTLHEALSEQRVQVDR
LEAGSEGLEDATRAVIRKAARASRARGGWGAERPRLYKFVAFREVRSGLF
LSVAGEELRLQEPNMSKACQFAAYTSQALTGLQSVLSRKWLGQHWISGAL
GVRGTGLGKNEEWEVDWRRPEGAFFLLCSANWGSGGYLMAFPKKDERLGQ
TLAYDLRLGGYNGEERGKAALFEIVDCESYRTTDVVTEIIQKKTPAELAA
EEERKRRGSLISLGALRTG

mRNA from alignment at KK037255.1:195214..196764+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9703 ID=rna9703|Name=rna9703|organism=Nannochloropsis gaditana|type=mRNA|length=1551bp|location=Sequence derived from alignment at KK037255.1:195214..196764+ (Nannochloropsis gaditana)
GCCCCTGCGTGCTTTATTACGGAACAAGCACTATCTGAACCCACTCTGAC
CTTCTCGTTGCGAATATTTACATTTAAGTGTCTCAGATGGAGCCAAGAGA
AGCGCCTGGAGATCCGAGGGGCAGCCACCGGGCAGGAATGGGGCAACAAA
AGGTAAGCTTCTTTCAGTCCCTGATCAGACATCTCGTCCTTGACCTAGCT
GACTGCTGCCCACCGAATGGGGCACAGGAACGTCACCAGTTCAAATCAAA
AGACGAGCTGGACGCTTATTTGCGAGTCGCGCATGAGTCTGTGGCCATAG
GGCGCGAGACCCTCACGGCCGTGGCGGGTCAAcaggaggccttggaccgC
TCCGAGGCCGTTGTGGACTCCAACCGCTACGTCATTGAGAAGAGTGCTAG
GACCTTGCGGGGCATGACATGGTGGGGATCTCTGCGGAATTATTTCTCTG
AAGAGCCCGAGGCCCCGCGGCCCCGCACATCGACCTGGCTGGCAGATCGG
CGTGCAGGCCTCCGGGGCCCGGGCCAGCAGGCAGGGGAACGGACAGAGGC
CCATTCCAGCGATCCCCCCTTGTGGAGGGATCAACCACGGGACGGCTGCA
GCAATCCAGTCAAGGATGAACGTCAAGAGCTTTTCGCACGGAAGGTCAAT
GGCGAGACCGCCGACGCTCGCCTCAAACGGGCCCATGTGGCCGGGCAGGG
CCCCCAGAGCCTGAGTGAGGTGGCGCGCATGCAGGACGAGTACCTGGAGA
GCCTTGGAAAGAGTCTGGACGAACAGCGGGGCATCGGAAGAACCTTGCAT
GAAGCCTTGAGTGAGCAAAGAGTGCAGGTAGACCGGCTGGAGGCGGGTAg
cgaggggctggaggacgcGACTCGGGCCGTAATCCGTAAGGCTGCCCGGG
CATCTAGGGCCCGAGGAGGTTGGGGCGCAGAAAGGCCGAGGCTGTACAAG
TTTGTAGCTTTCCGAGAAGTGCGGTCGGGACTCTTCCTAAGCGTGGCCGG
TGAGGAGCTCCGACTGCAGGAGCCGAACATGAGCAAAGCCTGCCAGTTTG
CGGCCTACACAAGCCAGGCCCTGACGGGCCTCCAGTCCGTTCTTTCCCGG
AAATGGCTTGGCCAGCACTGGATTTCTGGGGCTCTGGGTGTGCGAGGAAC
GGGTCTGGGGAAGAACGAGGAATGGGAGGTTGACTGGCGCCGACCTGAAG
GCGCTTTTTTTCTGTTGTGCTCGGCCAACTGGGGTAGTGGCGGGTACTTG
ATGGCGTTCCCTAAAAAGGATGAGAGACTGGGACAAACGCTGGCTTACGA
TTTGCGCTTGGGTGGATACAATGGAGAAgagcgagggaaggccgCGCTTT
TTGAGATTGTTGACTGTGAGAGCTACCGGACTACAGACGTGGTGACAGAA
ATTATACAGAAGAAAACTCCGGCCGAGTTAGccgcagaggaggagcggaa
gcgGCGGGGCTCTCTCATAAGCTTAGGGGCGTTGAGAACAGGGTAATTTA
TGTTAAAAACGCATGTAAAGAAATGTATACATGGCACGTGGATGCTCCAC
T

Coding sequence (CDS) from alignment at KK037255.1:195214..196764+

>rna9703 ID=rna9703|Name=rna9703|organism=Nannochloropsis gaditana|type=CDS|length=1410bp|location=Sequence derived from alignment at KK037255.1:195214..196764+ (Nannochloropsis gaditana)
ATGGAGCCAAGAGAAGCGCCTGGAGATCCGAGGGGCAGCCACCGGGCAGG
AATGGGGCAACAAAAGGTAAGCTTCTTTCAGTCCCTGATCAGACATCTCG
TCCTTGACCTAGCTGACTGCTGCCCACCGAATGGGGCACAGGAACGTCAC
CAGTTCAAATCAAAAGACGAGCTGGACGCTTATTTGCGAGTCGCGCATGA
GTCTGTGGCCATAGGGCGCGAGACCCTCACGGCCGTGGCGGGTCAAcagg
aggccttggaccgCTCCGAGGCCGTTGTGGACTCCAACCGCTACGTCATT
GAGAAGAGTGCTAGGACCTTGCGGGGCATGACATGGTGGGGATCTCTGCG
GAATTATTTCTCTGAAGAGCCCGAGGCCCCGCGGCCCCGCACATCGACCT
GGCTGGCAGATCGGCGTGCAGGCCTCCGGGGCCCGGGCCAGCAGGCAGGG
GAACGGACAGAGGCCCATTCCAGCGATCCCCCCTTGTGGAGGGATCAACC
ACGGGACGGCTGCAGCAATCCAGTCAAGGATGAACGTCAAGAGCTTTTCG
CACGGAAGGTCAATGGCGAGACCGCCGACGCTCGCCTCAAACGGGCCCAT
GTGGCCGGGCAGGGCCCCCAGAGCCTGAGTGAGGTGGCGCGCATGCAGGA
CGAGTACCTGGAGAGCCTTGGAAAGAGTCTGGACGAACAGCGGGGCATCG
GAAGAACCTTGCATGAAGCCTTGAGTGAGCAAAGAGTGCAGGTAGACCGG
CTGGAGGCGGGTAgcgaggggctggaggacgcGACTCGGGCCGTAATCCG
TAAGGCTGCCCGGGCATCTAGGGCCCGAGGAGGTTGGGGCGCAGAAAGGC
CGAGGCTGTACAAGTTTGTAGCTTTCCGAGAAGTGCGGTCGGGACTCTTC
CTAAGCGTGGCCGGTGAGGAGCTCCGACTGCAGGAGCCGAACATGAGCAA
AGCCTGCCAGTTTGCGGCCTACACAAGCCAGGCCCTGACGGGCCTCCAGT
CCGTTCTTTCCCGGAAATGGCTTGGCCAGCACTGGATTTCTGGGGCTCTG
GGTGTGCGAGGAACGGGTCTGGGGAAGAACGAGGAATGGGAGGTTGACTG
GCGCCGACCTGAAGGCGCTTTTTTTCTGTTGTGCTCGGCCAACTGGGGTA
GTGGCGGGTACTTGATGGCGTTCCCTAAAAAGGATGAGAGACTGGGACAA
ACGCTGGCTTACGATTTGCGCTTGGGTGGATACAATGGAGAAgagcgagg
gaaggccgCGCTTTTTGAGATTGTTGACTGTGAGAGCTACCGGACTACAG
ACGTGGTGACAGAAATTATACAGAAGAAAACTCCGGCCGAGTTAGccgca
gaggaggagcggaagcgGCGGGGCTCTCTCATAAGCTTAGGGGCGTTGAG
AACAGGGTAA

Synonyms

Publications