rna9696, rna9696 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9696
Unique Name	rna9696
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	622
Alignment location	KK037255.1:180576..182694 +

Link to JBrowse

Properties


Property Name	Value
Product	cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
Orig transcript id	gnl\|cribi\|Naga_100081g13.751.mrna
Orig protein id	gnl\|cribi\|Naga_100081g13.751
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037255.1	supercontig	KK037255.1:180576..182694 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100081g13	gene9417	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9696	rna9696-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21004.1	cds9665	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037255.1:180576..182694+
coding sequence from alignment at KK037255.1:180576..182694+

mRNA sequence

>rna9696 ID=rna9696|Name=rna9696|organism=Nannochloropsis gaditana|type=mRNA|length=622bp
GACGGCAGACTCTCAGTCCCGCTCAAAATCCTTCATTCCTTGTGTGCCAT
TCCTGCTCAATCAGGCCTTGGGTACGCGCGAATCTGAGAACAAAGTACGT
CGAGGATGGCTTTGCCGTCGGCACACGCAGCAACGCTCAAGAACGTTGCT
GGAAAAAGCAGTGTCCAGTTGTACCGAGATTGTCTCCGCGTCGCCGACCA
CATTGCCAGTAAGAGCCCGAAAGGAATTGCACTCAGGAAGATGCTTCGCT
CTGAGTTCAAAAAGAATGCCGCGGTGGATGATGCCAAGCAAGTGGAACAG
CTAAAGATGAATGCGGCCAGGGGGTTAGCTAATTATTTGCTTTATGAGTC
AGGAAGCAAGGAGCCCAAGATACGGGCACGGATGAATAAAACCACCTCGG
ATATGATTAAGCAATGCATGAACAATGCCAAGCGAGAACGAGAACGAAAA
GAGAAGGCTGAGAGAGGAGAAGGGGCAGAATTGGAGCACTTCCACGTAAA
GATTTAACAAGTGAATAGCTAATGCATGTCTATGAAGATGGCGAGAAGGC
AGTGTAAATTCACCGAATGAAGAACTTTAAACGGGTATTTTGGGTACCTT
GGATTTTTTTTTGAAATACGCA

protein sequence of rna9696

>rna9696-protein ID=rna9696-protein|Name=rna9696|organism=Nannochloropsis gaditana|type=polypeptide|length=347bp
MNRTVAYPSTSKLTYQICCAGLISLCKAFLRPCVQDVPTSRKTRMRVEGA
LFTCTLAFYFASTGAAAGSSSAALAFQTPGLPSRSPSALLGLVVPQSFTA
STRPFSHLAYLADRKAWQGRTAVVTESNGGEVSWSRLARMAGGGNAASNR
GNEPSLWNLPNILTLLRVISIPVLIIIYYTSASWRNAACSGLFVFAAMTD
WLDGYLARRMNLSSPLGAFLDPVADKLMVATALVLMADRLNSPVVTVSTA
IIICREIGVSALREWMASQGARDTVAVGWWGKFKTATQMLALSVLLYVQP
PLASHDALAHKLLEVGVGLLAFSAVLTVYSAVGYVQAAWPALTGKAK

mRNA from alignment at KK037255.1:180576..182694+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9696 ID=rna9696|Name=rna9696|organism=Nannochloropsis gaditana|type=mRNA|length=2119bp|location=Sequence derived from alignment at KK037255.1:180576..182694+ (Nannochloropsis gaditana)
ATTGCTTACCTTACTGGCAATGTGGTCGGCGACGCGGAGACAATCTCGGT
ACAACTATTTTTTGCGAATTATAATATACTAGCTGTGAGCTTTGTGCTGG
GTCAGCGGGGTGGCATTTGTGACGGCGTTACCCTTCTTTCCTAACCTCAC
CTGGACACTGCTTTTTCCAGCAACGTTCTTGAGCGTTGCTGCGTGTGCCG
ACGGCAAAGCCATCCTCGACGTACTTTGTTCTCAGATTCGCGCGTACCCA
AGGCCTGATTGAGCAGGAATGGCACACAAGGAATGAAGGATTTTGAGCGG
GACTGAGAGTCTGCCGTCGCACCAAGGCTTTGACGGTAAAGACTCTCCGA
GGGCCCTTCGCCGTGAGGCTGCCATAGCGAGCTCGCGTCGAAGCCGCGAC
TTGCTTGAAACCGCGTGAATGAACCGGACGGTCGCCTATCCAAGCACTTC
GAAGCTTACTTACCAAATTTGTTGCGCAGGCTTAATTTCTTTATGCAAAG
CATTTCTTCGCCCGTGTGTACAGGACGTGCCCACCAGCAGGAAGACCCGA
ATGAGGGTTGAAGGAGCGCTTTTTACTTGTACACTAGCTTTTTATTTCGC
TTCTACGGGCGCGGCAGCAGGCAGTTCCAGGTATGTATGGCACAGTTAAG
TCAGTTTCTGTGGATTGATGGCTCTCTGTCTGACCTGACCCCTCCGACAT
GCACAGCGCGGCCCTCGCTTTCCAGACACCTGGActcccctcccgcagcc
CCTCTGCGTTGCTAGGTCTAGTGGTGCCTCAGTCGTTCACTGCTTCCACT
CGACCCTTCTCACATTTGGCCTACCTGGCGGATAGAAAGGCCTGGCAGGG
ACGCACCGCAGTCGTAACAGAAAGcaacgggggggaggtctcCTGGTCAC
GGCTTGCGCGCATGGCGGGGGGTGGAAACGCCGCCTCCAATCGGGGCAAC
GAGCCCTCTTTATGGAATCTGCCTAATATCCTAACGTTGCTGCGCGTCAT
TTCTATCCCtgtcctcatcatcatctaCTACACGAGCGCGGTACGTGGGA
GACACGCCAGGCGTTGGGGCGCTCTCGTCTCATCTTTGTCGTGCGCGTGG
CCGTGTCATGTGTCCTAATAAAGCGAAACCATTGAGCTTGCGCTTCAGCT
GAGAAAAGAACGTCAAGCAACTTACGAGCCTgcgctctcccgccttcctc
catcccccaaTCCCGACACCATCAGAGCTGGCGGAACGCGGCCTGCTCGG
GGCTCTTCGTCTTTGCGGCCATGACGGACTGGCTAGACGGCTATCTAGCC
CGACGTATGAACCTGAGCTCCCCTCTGGGCGCTTTCCTCGACCCCGTTGC
TGACAAGGTGAGGcgcctggaaggagggctccgggagggaggtcgggttT
TGTCCCGGAAGGGGTGTCTCTCCCGTTGTCTGCCACCGTCCCGTGATCGC
AGCGGCTGATGAAATGAACACTACCTGCCCTGTACACTCCTTTCATCGCA
CAGCTCATGGTGGCCACGGCTTTGGTCCTCATGGCGGATAGGTTGAACTC
GCCGGTCGTCACCGTCTCCACCGCCATCATTATCTGCCGTGAGATAGGAG
TCTCCGCTCTCCGCGAATGGATGGCGTCGCAAGGGGCTCGAGACACCGTA
GCGGTGGGCTGGTGGGGTAAATTTAAGACGGCCACGCAGATGCTAGCCCT
CTCTGTCTTGCTCTACGTTCAGCCCCCCTTGGCCAGCCACGATGCGCTGG
CGCACAAGCTTCTGGAGGTGGGCGTGGGTCTGTTGGCTTTTTCGGCTGTA
TTGACTGTGTATTCTGCTGTTGGATACGTGCAGGCAGCCTGGCCCGCTTT
AACAGGCAAGGCTAAATGAGGAGTGAGGACTttgccgcggaggaggttaa
tTTCGACGAGTGCAACAGTGTGACGAGCATAATCGCATCTCAAACTGACT
ATTGATCGGCATTCAAAAATAAACAAAACTTGAACAAAGCATCGATTTTC
CAAAAAAAAGTGTTCATTCGCCCATAGGTACGACCCAGTAACGAATGTGA
TGCCTTCGCTTCCGAGTCTGTGCTCGGTCCTTTCCACAATCTCAGTACAT
GACACCCGCCTCTCACTGT

Coding sequence (CDS) from alignment at KK037255.1:180576..182694+

>rna9696 ID=rna9696|Name=rna9696|organism=Nannochloropsis gaditana|type=CDS|length=4176bp|location=Sequence derived from alignment at KK037255.1:180576..182694+ (Nannochloropsis gaditana)
ATGAACCGGACGGTCGCCTATCCAAGCACTTCGAAGCTTACTTACCAAAT
TTGTTGCGCAGGCTTAATTTCTTTATGCAAAGCATTTCTTCGCCCGTGTG
TACAGGACGTGCCCACCAGCAGGAAGACCCGAATGAGGGTTGAAGGAGCG
CTTTTTACTTGTACACTAGCTTTTTATTTCGCTTCTACGGGCGCGGCAGC
AGGCAGTTCCAGCGCGGCCCTCGCTTTCCAGACACCTGGActcccctccc
gcagccCCTCTGCGTTGCTAGGTCTAGTGGTGCCTCAGTCGTTCACTGCT
TCCACTCGACCCTTCTCACATTTGGCCTACCTGGCGGATAGAAAGGCCTG
GCAGGGACGCACCGCAGTCGTAACAGAAAGcaacgggggggaggtctcCT
GGTCACGGCTTGCGCGCATGGCGGGGGGTGGAAACGCCGCCTCCAATCGG
GGCAACGAGCCCTCTTTATGGAATCTGCCTAATATCCTAACGTTGCTGCG
CGTCATTTCTATCCCtgtcctcatcatcatctaCTACACGAGCGCGAGCT
GGCGGAACGCGGCCTGCTCGGGGCTCTTCGTCTTTGCGGCCATGACGGAC
TGGCTAGACGGCTATCTAGCCCGACGTATGAACCTGAGCTCCCCTCTGGG
CGCTTTCCTCGACCCCGTTGCTGACAAGCTCATGGTGGCCACGGCTTTGG
TCCTCATGGCGGATAGGTTGAACTCGCCGGTCGTCACCGTCTCCACCGCC
ATCATTATCTGCCGTGAGATAGGAGTCTCCGCTCTCCGCGAATGGATGGC
GTCGCAAGGGGCTCGAGACACCGTAGCGGTGGGCTGGTGGGGTAAATTTA
AGACGGCCACGCAGATGCTAGCCCTCTCTGTCTTGCTCTACGTTCAGCCC
CCCTTGGCCAGCCACGATGCGCTGGCGCACAAGCTTCTGGAGGTGGGCGT
GGGTCTGTTGGCTTTTTCGGCTGTATTGACTGTGTATTCTGCTGTTGGAT
ACGTGCAGGCAGCCTGGCCCGCTTTAACAGGCAAGGCTAAATGAATGAAC
CGGACGGTCGCCTATCCAAGCACTTCGAAGCTTACTTACCAAATTTGTTG
CGCAGGCTTAATTTCTTTATGCAAAGCATTTCTTCGCCCGTGTGTACAGG
ACGTGCCCACCAGCAGGAAGACCCGAATGAGGGTTGAAGGAGCGCTTTTT
ACTTGTACACTAGCTTTTTATTTCGCTTCTACGGGCGCGGCAGCAGGCAG
TTCCAGCGCGGCCCTCGCTTTCCAGACACCTGGActcccctcccgcagcc
CCTCTGCGTTGCTAGGTCTAGTGGTGCCTCAGTCGTTCACTGCTTCCACT
CGACCCTTCTCACATTTGGCCTACCTGGCGGATAGAAAGGCCTGGCAGGG
ACGCACCGCAGTCGTAACAGAAAGcaacgggggggaggtctcCTGGTCAC
GGCTTGCGCGCATGGCGGGGGGTGGAAACGCCGCCTCCAATCGGGGCAAC
GAGCCCTCTTTATGGAATCTGCCTAATATCCTAACGTTGCTGCGCGTCAT
TTCTATCCCtgtcctcatcatcatctaCTACACGAGCGCGAGCTGGCGGA
ACGCGGCCTGCTCGGGGCTCTTCGTCTTTGCGGCCATGACGGACTGGCTA
GACGGCTATCTAGCCCGACGTATGAACCTGAGCTCCCCTCTGGGCGCTTT
CCTCGACCCCGTTGCTGACAAGCTCATGGTGGCCACGGCTTTGGTCCTCA
TGGCGGATAGGTTGAACTCGCCGGTCGTCACCGTCTCCACCGCCATCATT
ATCTGCCGTGAGATAGGAGTCTCCGCTCTCCGCGAATGGATGGCGTCGCA
AGGGGCTCGAGACACCGTAGCGGTGGGCTGGTGGGGTAAATTTAAGACGG
CCACGCAGATGCTAGCCCTCTCTGTCTTGCTCTACGTTCAGCCCCCCTTG
GCCAGCCACGATGCGCTGGCGCACAAGCTTCTGGAGGTGGGCGTGGGTCT
GTTGGCTTTTTCGGCTGTATTGACTGTGTATTCTGCTGTTGGATACGTGC
AGGCAGCCTGGCCCGCTTTAACAGGCAAGGCTAAATGAATGAACCGGACG
GTCGCCTATCCAAGCACTTCGAAGCTTACTTACCAAATTTGTTGCGCAGG
CTTAATTTCTTTATGCAAAGCATTTCTTCGCCCGTGTGTACAGGACGTGC
CCACCAGCAGGAAGACCCGAATGAGGGTTGAAGGAGCGCTTTTTACTTGT
ACACTAGCTTTTTATTTCGCTTCTACGGGCGCGGCAGCAGGCAGTTCCAG
CGCGGCCCTCGCTTTCCAGACACCTGGActcccctcccgcagccCCTCTG
CGTTGCTAGGTCTAGTGGTGCCTCAGTCGTTCACTGCTTCCACTCGACCC
TTCTCACATTTGGCCTACCTGGCGGATAGAAAGGCCTGGCAGGGACGCAC
CGCAGTCGTAACAGAAAGcaacgggggggaggtctcCTGGTCACGGCTTG
CGCGCATGGCGGGGGGTGGAAACGCCGCCTCCAATCGGGGCAACGAGCCC
TCTTTATGGAATCTGCCTAATATCCTAACGTTGCTGCGCGTCATTTCTAT
CCCtgtcctcatcatcatctaCTACACGAGCGCGAGCTGGCGGAACGCGG
CCTGCTCGGGGCTCTTCGTCTTTGCGGCCATGACGGACTGGCTAGACGGC
TATCTAGCCCGACGTATGAACCTGAGCTCCCCTCTGGGCGCTTTCCTCGA
CCCCGTTGCTGACAAGCTCATGGTGGCCACGGCTTTGGTCCTCATGGCGG
ATAGGTTGAACTCGCCGGTCGTCACCGTCTCCACCGCCATCATTATCTGC
CGTGAGATAGGAGTCTCCGCTCTCCGCGAATGGATGGCGTCGCAAGGGGC
TCGAGACACCGTAGCGGTGGGCTGGTGGGGTAAATTTAAGACGGCCACGC
AGATGCTAGCCCTCTCTGTCTTGCTCTACGTTCAGCCCCCCTTGGCCAGC
CACGATGCGCTGGCGCACAAGCTTCTGGAGGTGGGCGTGGGTCTGTTGGC
TTTTTCGGCTGTATTGACTGTGTATTCTGCTGTTGGATACGTGCAGGCAG
CCTGGCCCGCTTTAACAGGCAAGGCTAAATGAATGAACCGGACGGTCGCC
TATCCAAGCACTTCGAAGCTTACTTACCAAATTTGTTGCGCAGGCTTAAT
TTCTTTATGCAAAGCATTTCTTCGCCCGTGTGTACAGGACGTGCCCACCA
GCAGGAAGACCCGAATGAGGGTTGAAGGAGCGCTTTTTACTTGTACACTA
GCTTTTTATTTCGCTTCTACGGGCGCGGCAGCAGGCAGTTCCAGCGCGGC
CCTCGCTTTCCAGACACCTGGActcccctcccgcagccCCTCTGCGTTGC
TAGGTCTAGTGGTGCCTCAGTCGTTCACTGCTTCCACTCGACCCTTCTCA
CATTTGGCCTACCTGGCGGATAGAAAGGCCTGGCAGGGACGCACCGCAGT
CGTAACAGAAAGcaacgggggggaggtctcCTGGTCACGGCTTGCGCGCA
TGGCGGGGGGTGGAAACGCCGCCTCCAATCGGGGCAACGAGCCCTCTTTA
TGGAATCTGCCTAATATCCTAACGTTGCTGCGCGTCATTTCTATCCCtgt
cctcatcatcatctaCTACACGAGCGCGAGCTGGCGGAACGCGGCCTGCT
CGGGGCTCTTCGTCTTTGCGGCCATGACGGACTGGCTAGACGGCTATCTA
GCCCGACGTATGAACCTGAGCTCCCCTCTGGGCGCTTTCCTCGACCCCGT
TGCTGACAAGCTCATGGTGGCCACGGCTTTGGTCCTCATGGCGGATAGGT
TGAACTCGCCGGTCGTCACCGTCTCCACCGCCATCATTATCTGCCGTGAG
ATAGGAGTCTCCGCTCTCCGCGAATGGATGGCGTCGCAAGGGGCTCGAGA
CACCGTAGCGGTGGGCTGGTGGGGTAAATTTAAGACGGCCACGCAGATGC
TAGCCCTCTCTGTCTTGCTCTACGTTCAGCCCCCCTTGGCCAGCCACGAT
GCGCTGGCGCACAAGCTTCTGGAGGTGGGCGTGGGTCTGTTGGCTTTTTC
GGCTGTATTGACTGTGTATTCTGCTGTTGGATACGTGCAGGCAGCCTGGC
CCGCTTTAACAGGCAAGGCTAAATGA

Synonyms

Publications