EWM21004.1, cds9665 (CDS) Nannochloropsis gaditana

Overview
NameEWM21004.1
Unique Namecds9665
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:180994..181205 +
Alignment locationKK037255.1:181282..181615 +
Alignment locationKK037255.1:181801..181932 +
Alignment locationKK037255.1:182079..182444 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21004.1
Productcdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
Orig transcript idgnl|cribi|Naga_100081g13.751.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:180994..181205 +
KK037255.1supercontigKK037255.1:181282..181615 +
KK037255.1supercontigKK037255.1:181801..181932 +
KK037255.1supercontigKK037255.1:182079..182444 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
GO:0008654phospholipid biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0016780phosphotransferase activity, for other substituted phosphate groups
GO:0008444CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR000462CDP-OH_P_trans
IPR004570Phosphatidylglycerol_P_synth
Homology
BLAST of EWM21004.1 vs. NCBI_GenBank
Match: gi|585101002|gb|EWM21004.1| (cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 700.279 bits (1806), Expect = 0.000e+0
Identity = 347/347 (100.00%), Postives = 347/347 (100.00%), Query Frame = 0
Query:    1 MNRTVAYPSTSKLTYQICCAGLISLCKAFLRPCVQDVPTSRKTRMRVEGALFTCTLAFYFASTGAAAGSSSAALAFQTPGLPSRSPSALLGLVVPQSFTASTRPFSHLAYLADRKAWQGRTAVVTESNGGEVSWSRLARMAGGGNAASNRGNEPSLWNLPNILTLLRVISIPVLIIIYYTSASWRNAACSGLFVFAAMTDWLDGYLARRMNLSSPLGAFLDPVADKLMVATALVLMADRLNSPVVTVSTAIIICREIGVSALREWMASQGARDTVAVGWWGKFKTATQMLALSVLLYVQPPLASHDALAHKLLEVGVGLLAFSAVLTVYSAVGYVQAAWPALTGKAK 347
            MNRTVAYPSTSKLTYQICCAGLISLCKAFLRPCVQDVPTSRKTRMRVEGALFTCTLAFYFASTGAAAGSSSAALAFQTPGLPSRSPSALLGLVVPQSFTASTRPFSHLAYLADRKAWQGRTAVVTESNGGEVSWSRLARMAGGGNAASNRGNEPSLWNLPNILTLLRVISIPVLIIIYYTSASWRNAACSGLFVFAAMTDWLDGYLARRMNLSSPLGAFLDPVADKLMVATALVLMADRLNSPVVTVSTAIIICREIGVSALREWMASQGARDTVAVGWWGKFKTATQMLALSVLLYVQPPLASHDALAHKLLEVGVGLLAFSAVLTVYSAVGYVQAAWPALTGKAK
Sbjct:    1 MNRTVAYPSTSKLTYQICCAGLISLCKAFLRPCVQDVPTSRKTRMRVEGALFTCTLAFYFASTGAAAGSSSAALAFQTPGLPSRSPSALLGLVVPQSFTASTRPFSHLAYLADRKAWQGRTAVVTESNGGEVSWSRLARMAGGGNAASNRGNEPSLWNLPNILTLLRVISIPVLIIIYYTSASWRNAACSGLFVFAAMTDWLDGYLARRMNLSSPLGAFLDPVADKLMVATALVLMADRLNSPVVTVSTAIIICREIGVSALREWMASQGARDTVAVGWWGKFKTATQMLALSVLLYVQPPLASHDALAHKLLEVGVGLLAFSAVLTVYSAVGYVQAAWPALTGKAK 347          
BLAST of EWM21004.1 vs. NCBI_GenBank
Match: gi|298705481|emb|CBJ28756.1| (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Ectocarpus siliculosus])

HSP 1 Score: 212.231 bits (539), Expect = 2.195e-63
Identity = 107/192 (55.73%), Postives = 141/192 (73.44%), Query Frame = 0
Query:  155 SLWNLPNILTLLRVISIPVLIIIYYTSASWRNAACSGLFVFAAMTDWLDGYLARRMNLSSPLGAFLDPVADKLMVATALVLMADRLNSPVVTVSTAIIICREIGVSALREWMASQGARDTVAVGWWGKFKTATQMLALSVLLYVQPPLASHDALAHKLLEVGVGLLAFSAVLTVYSAVGYVQAAWPALTGKA 346
            +LWN+PNILT+ RV++IPV   I+Y S   RN  CS +F  AA TDWLDGY+ARR  + +P G+FLDPVADKL+V+TAL+L+++RL  P +TV +AII+CRE+G+SALREWMA  G R+TV VG  GK+KTATQM+A+++LL ++P            + +  GLL  S VLTV S  GY++AAWPAL GKA
Sbjct:   89 TLWNVPNILTMARVMAIPVFATIFYASLPRRNIWCSAIFAGAAFTDWLDGYIARRQGIVTPFGSFLDPVADKLLVSTALILLSERLG-PWMTVCSAIILCRELGISALREWMAQLGLRETVKVGNAGKWKTATQMMAITMLLLLEPGATVTLVNPATYMPIAKGLLYVSTVLTVTSGSGYLKAAWPALMGKA 279          
BLAST of EWM21004.1 vs. NCBI_GenBank
Match: gi|1054552666|ref|WP_066322061.1| (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Halomonas sp. G11] >gi|1036581209|gb|OAZ89925.1| CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Halomonas sp. G11])

HSP 1 Score: 189.889 bits (481), Expect = 4.253e-56
Identity = 96/186 (51.61%), Postives = 130/186 (69.89%), Query Frame = 0
Query:  158 NLPNILTLLRVISIPVLIIIYYTSASWRNAACSGLFVFAAMTDWLDGYLARRMNLSSPLGAFLDPVADKLMVATALVLMADRLNSPVVTVSTAIIICREIGVSALREWMASQGARDTVAVGWWGKFKTATQMLALSVLLYVQPPLASHDALAHKLLEVGVGLLAFSAVLTVYSAVGYVQAAWPALT 343
            N+PNILTL R+  IP+L++++Y   SW     +G+F  A++TDWLDGYLARR N S+P GAFLDPVADKLMVA AL L+ +R ++ ++T+   +II REI +SALREWMA  G R  VAV W GK KT  QM+A+ VLL   P        AH L +VGV +L  +A+LT++S + Y+++AWP L+
Sbjct:    2 NIPNILTLARIAFIPLLVVLFYLPFSWSMPIAAGMFALASVTDWLDGYLARRWNQSTPFGAFLDPVADKLMVAVALALLIERFDTALLTLPALVIIGREIVISALREWMAEMGKRGMVAVSWVGKLKTTLQMVAILVLLAFPP--------AHPLAQVGVLILYVAAMLTLWSMIQYLKSAWPHLS 179          
BLAST of EWM21004.1 vs. NCBI_GenBank
Match: gi|1178480742|ref|WP_083002578.1| (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Halomonas sp. GT])

HSP 1 Score: 189.504 bits (480), Expect = 5.944e-56
Identity = 96/186 (51.61%), Postives = 128/186 (68.82%), Query Frame = 0
Query:  158 NLPNILTLLRVISIPVLIIIYYTSASWRNAACSGLFVFAAMTDWLDGYLARRMNLSSPLGAFLDPVADKLMVATALVLMADRLNSPVVTVSTAIIICREIGVSALREWMASQGARDTVAVGWWGKFKTATQMLALSVLLYVQPPLASHDALAHKLLEVGVGLLAFSAVLTVYSAVGYVQAAWPALT 343
            N+PNILTL R++ IP+L++++Y   SW     +GLF  A++TDWLDGYLARR N S+P GAFLDPVADKLMVA AL L+ +R ++ V+T+   +II REI +SALREWMA  G R  VAV W GK KT  QM+AL +LL   P         H+   +GV +L  +A+LT++S   Y++AAWP L+
Sbjct:    2 NIPNILTLARIVFIPLLVVLFYLPFSWSMPVAAGLFALASITDWLDGYLARRWNQSTPFGAFLDPVADKLMVAVALALLIERFDTLVLTLPALVIIGREIVISALREWMAEMGKRGMVAVSWIGKLKTTLQMVALLILLAFPP--------GHEFALIGVVVLYAAAILTLWSMAQYLKAAWPHLS 179          
BLAST of EWM21004.1 vs. NCBI_GenBank
Match: gi|497408521|ref|WP_009722719.1| (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Halomonas sp. TD01] >gi|338765330|gb|EGP20274.1| CDP-diacylglycerol--glycerol-3-phosphate3-phospha tidyltransferase [Halomonas sp. TD01])

HSP 1 Score: 189.504 bits (480), Expect = 6.140e-56
Identity = 96/186 (51.61%), Postives = 129/186 (69.35%), Query Frame = 0
Query:  158 NLPNILTLLRVISIPVLIIIYYTSASWRNAACSGLFVFAAMTDWLDGYLARRMNLSSPLGAFLDPVADKLMVATALVLMADRLNSPVVTVSTAIIICREIGVSALREWMASQGARDTVAVGWWGKFKTATQMLALSVLLYVQPPLASHDALAHKLLEVGVGLLAFSAVLTVYSAVGYVQAAWPALT 343
            N+PNILTL R++ IP+L++++Y   +W     +GLF  A++TDWLDGYLARR N S+P GAFLDPVADKLMVA AL L+ +R ++ V+T+   +II REI +SALREWMA  G R  VAV W GK KT  QM+AL +LL   P         H+L  +GV +L  +A+LT++S   Y++AAWP L+
Sbjct:    2 NIPNILTLARIVFIPLLVVLFYLPFNWSMPVAAGLFALASITDWLDGYLARRWNQSTPFGAFLDPVADKLMVAVALALLIERFDTLVLTLPALVIIGREIVISALREWMAEMGKRGMVAVSWIGKLKTTLQMVALLILLAFPP--------GHELAIIGVVVLYAAAILTLWSMAQYLKAAWPHLS 179          
BLAST of EWM21004.1 vs. NCBI_GenBank
Match: gi|740697597|ref|WP_038482886.1| (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Halomonas campaniensis] >gi|641742290|gb|AIA75568.1| CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Halomonas campaniensis])

HSP 1 Score: 188.734 bits (478), Expect = 1.212e-55
Identity = 96/186 (51.61%), Postives = 128/186 (68.82%), Query Frame = 0
Query:  158 NLPNILTLLRVISIPVLIIIYYTSASWRNAACSGLFVFAAMTDWLDGYLARRMNLSSPLGAFLDPVADKLMVATALVLMADRLNSPVVTVSTAIIICREIGVSALREWMASQGARDTVAVGWWGKFKTATQMLALSVLLYVQPPLASHDALAHKLLEVGVGLLAFSAVLTVYSAVGYVQAAWPALT 343
            N+PNILTL R++ IP+L++++Y   SW     +GLF  A++TDWLDGYLARR N S+P GAFLDPVADKLMVA AL L+ +R ++ V+T+   +II REI +SALREWMA  G R  VAV W GK KT  QM+AL +LL   P         H+   +GV +L  +A+LT++S   Y++AAWP L+
Sbjct:    2 NIPNILTLARIVFIPLLVVLFYLPFSWSMPVAAGLFALASITDWLDGYLARRWNQSTPFGAFLDPVADKLMVAVALALLIERFDTLVLTLPALVIIGREIVISALREWMAEMGKRGMVAVSWIGKLKTTLQMVALLILLAFPP--------GHEFALMGVVVLYAAAILTLWSMAQYLKAAWPHLS 179          
BLAST of EWM21004.1 vs. NCBI_GenBank
Match: gi|662116697|ref|WP_030070301.1| (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Halomonas alkaliantarctica])

HSP 1 Score: 188.734 bits (478), Expect = 1.239e-55
Identity = 97/186 (52.15%), Postives = 128/186 (68.82%), Query Frame = 0
Query:  158 NLPNILTLLRVISIPVLIIIYYTSASWRNAACSGLFVFAAMTDWLDGYLARRMNLSSPLGAFLDPVADKLMVATALVLMADRLNSPVVTVSTAIIICREIGVSALREWMASQGARDTVAVGWWGKFKTATQMLALSVLLYVQPPLASHDALAHKLLEVGVGLLAFSAVLTVYSAVGYVQAAWPALT 343
            N+PNILTL R+  IP+L++++Y   SW     +GLF  A++TDWLDGYLARR N S+P GAFLDPVADKLMVA AL L+ +R ++ V+T+   +II REI +SALREWMA  G R  VAV W GK KT  QM+AL +LL   P         H+L  +GV +L  +A+LT++S   Y++AAWP L+
Sbjct:    2 NIPNILTLARIAFIPLLVVLFYLPFSWSMPVAAGLFALASVTDWLDGYLARRWNQSTPFGAFLDPVADKLMVAVALALLIERFDTLVLTLPALVIIGREIVISALREWMAEMGKRGMVAVSWIGKLKTTLQMVALLILLAFPP--------GHELALIGVVVLYAAAILTLWSMAQYLKAAWPHLS 179          
BLAST of EWM21004.1 vs. NCBI_GenBank
Match: gi|751597730|ref|WP_041065910.1| (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Thiolapillus brandeum] >gi|574954965|dbj|BAO43808.1| CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Thiolapillus brandeum])

HSP 1 Score: 188.734 bits (478), Expect = 1.613e-55
Identity = 99/192 (51.56%), Postives = 130/192 (67.71%), Query Frame = 0
Query:  156 LWNLPNILTLLRVISIPVLIIIYYTSASWRNAACSGLFVFAAMTDWLDGYLARRMNLSSPLGAFLDPVADKLMVATALVLMADRLNSPVVTVSTAIIICREIGVSALREWMASQGARDTVAVGWWGKFKTATQMLALSVLLYVQPPLASHDALAHKLLEVGVGLLAFSAVLTVYSAVGYVQAAWPALTGKAK 347
            +W++PN+LT  R+I IPV + ++Y  A W +   + +F+ AA TDWLDG+LARRM L+SPLGAFLDPVADKLMV TALVL+     SP + +S A+II REI +SALREWMA  GAR  VAV W GKFKTA QM A+++L+Y       HD        +G  LL  +  LT++S   Y++AAWP+L+   K
Sbjct:    1 MWSIPNLLTFSRIIMIPVFVGMFYLPAPWNHQVAALVFMVAAFTDWLDGFLARRMGLTSPLGAFLDPVADKLMVTTALVLLVADNPSPWMALSAAVIIGREITISALREWMAELGARAKVAVSWVGKFKTAAQMGAITLLIY------RHDLFGLPTYRIGELLLYVAVALTLWSMTVYLRAAWPSLSEDRK 186          
BLAST of EWM21004.1 vs. NCBI_GenBank
Match: gi|1089021516|emb|SDX65942.1| (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Pseudomonas kuykendallii])

HSP 1 Score: 188.348 bits (477), Expect = 1.945e-55
Identity = 105/186 (56.45%), Postives = 130/186 (69.89%), Query Frame = 0
Query:  158 NLPNILTLLRVISIPVLIIIYYTSASWRNAACSGLFVFAAMTDWLDGYLARRMNLSSPLGAFLDPVADKLMVATALVLMADRLNSPVVTVSTAIIICREIGVSALREWMASQGARDTVAVGWWGKFKTATQMLALSVLLYVQPPLASHDALAHKLLEVGVGLLAFSAVLTVYSAVGYVQAAWPALT 343
            N+PN+LT+LRV+ IPV I+ +Y   SW   A SG+F  AA+TDW DGYLARR+  S+P GAFLDPVADKLMVA ALVL+ +   +  +T+  AIII REI VSALREWMA  GAR  VAV  WGK+KTA QM AL +LL   PP+ S+  L      +G  LL  SAVLT++S + Y+ AAWP L+
Sbjct:    2 NIPNLLTVLRVLLIPVFILFFYLPFSWSYWASSGVFAIAAVTDWFDGYLARRLEQSTPFGAFLDPVADKLMVAVALVLLVEEHATLWLTLPAAIIIGREIVVSALREWMAELGARAHVAVSSWGKWKTAAQMAALIILL-ANPPVMSNWVL------LGFVLLIISAVLTLWSMLQYLIAAWPHLS 180          
BLAST of EWM21004.1 vs. NCBI_GenBank
Match: gi|1093545957|ref|WP_070883161.1| (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Pseudomonas punonensis] >gi|1086694037|emb|SDG07983.1| CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Pseudomonas seleniipraecipitans])

HSP 1 Score: 188.348 bits (477), Expect = 2.548e-55
Identity = 107/190 (56.32%), Postives = 131/190 (68.95%), Query Frame = 0
Query:  158 NLPNILTLLRVISIPVLIIIYYTSASWRNAACSGLFVFAAMTDWLDGYLARRMNLSSPLGAFLDPVADKLMVATALVLMADRLNSPVVTVSTAIIICREIGVSALREWMASQGARDTVAVGWWGKFKTATQMLALSVLLYVQPPLASHDALAHKLLEVGVGLLAFSAVLTVYSAVGYVQAAWPALTGKAK 347
            N+PN+LT+LRV+ IP+ I+++Y   SW   A SG+F FAA+TDWLDGYLARR   S+P GAFLDPVADKLMVATALVL+     +  +T+  AIII REI VSALREWMA  GAR  VAV   GK+KTA QM+AL +LL   PPL     L      VG  LL  +AVLT++S   Y+ AAWP L+  A+
Sbjct:    2 NIPNLLTVLRVLLIPIFILLFYMPFSWSYWAASGVFAFAAITDWLDGYLARRWEQSTPFGAFLDPVADKLMVATALVLLVAEHTNLWLTIPAAIIIGREIVVSALREWMAELGARAHVAVSNLGKWKTAAQMVALVILLG-NPPLFGFWVL------VGYALLIIAAVLTLWSMAQYLLAAWPHLSVSAE 184          
The following BLAST results are available for this feature:
BLAST of EWM21004.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101002|gb|EWM21004.1|0.000e+0100.00cdp-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
gi|298705481|emb|CBJ28756.1|2.195e-6355.73CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
gi|1054552666|ref|WP_066322061.1|4.253e-5651.61CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
gi|1178480742|ref|WP_083002578.1|5.944e-5651.61CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
gi|497408521|ref|WP_009722719.1|6.140e-5651.61CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
gi|740697597|ref|WP_038482886.1|1.212e-5551.61CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
gi|662116697|ref|WP_030070301.1|1.239e-5552.15CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
gi|751597730|ref|WP_041065910.1|1.613e-5551.56CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
gi|1089021516|emb|SDX65942.1|1.945e-5556.45CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
gi|1093545957|ref|WP_070883161.1|2.548e-5556.32CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9696rna9696Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications