rna9693, rna9693 (mRNA) Nannochloropsis gaditana

Overview
Namerna9693
Unique Namerna9693
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2915
Alignment locationKK037255.1:176454..177260 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100081g10.743.mrna
Orig protein idgnl|cribi|Naga_100081g10.743
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:176454..177260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100081g10gene9414Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9693rna9693-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20996.1cds9662Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9693 ID=rna9693|Name=rna9693|organism=Nannochloropsis gaditana|type=mRNA|length=2915bp
AATACAAAAGCTACGCTCATGGTTTGCTTATTTGCTTGTTTTTTCTTGTT
CAGAAACACGTCGTTGGCTGACCCCTCTGTCCCTCTCACCTGCCAGGGCA
GGACGCTTATGCCTGGAGTGCCGCCCCAGGTGACGGGGCCTCTCCTGGTC
CTTGGCGCGGCTCTTTTGCTGACTATCACGATAAAAGAGGCCTTGGACCG
GAAAGAGGGCAAACAACGATCCAAAATCCCATTGCATAACCCCAGGGGTC
TTCGCTTCGAGCTGCCGGGCACCTCCTCATCGATACCGGCCCCGAGTTTG
CCCTCAGAACGCTCCTTCATATCCACTTCTTCGGAAAGGGGGCTGTAACA
CCGCACAATAGCCGCAAGAGGTAGCCCTCGGAGTATGAGTGTGGACAACA
TTCATGTTCATCTCGAGCAGGGCGGGATCACGGTCCCATCGGTCGAAGAG
ACTGTTCCCTTCGCCCCCTGCTACCTCCTGCCCCCCATTACTGCCTTGCT
GCTCACACCTCTGCGCGTCGCGGATGGCTCCATTCCCTTGCCCTTCCTTC
CCTCTGAAAGCGTGCTTCTCCATCTGTTACTGGGCCGGCGCGTGCCCGCC
TCAGGGGAGGTGACACTGCTCCTTTTCCTAGGCGACGAAAAGGACGATCA
GGGGGTCGAGCCCCCGCCTTTGTGCCCATGCGCACGCTACAGCATGGTGG
TGCACCGGACCTGGGTATATGACGAAAGCGCCTGGAGCACGATAAAGGAG
GGCGCACCGTGTAGCGAGAAGGGGGGACAACCCGGCGGGAAGGCGGCGCC
CGAACCCCCCGTCGGCCTCGTCACGCCTGGCACCAGGGTCCTCGTGCAGG
GGCAGACGTGCGACTGGCTCGCACCCGACAGGGAGGTCTGGGAGTCGTTT
CTAGGTCCTGGCGTGGGACTCCTTCCCTCGGATCCCCCTGTGCTCACAGA
AATGTGCGCGCGGATTAAGAGGGGTCTGGGTCTCGGTCCGAGGGTTGGGG
GCGGCCGGGCCCTGGCGAGGGAGCAAGCGCCCGGCCTGGTCCTGCTCGAC
GGCCCCAGTGGTTCGGGGAAGACTGCCCTGGTTAGAGCGGCAGCGCTAGC
ACTGGGTCTCGTCACGGTGCTCGTGCGTCCTGGCGGGCTCATGGCCCGTC
ACGACGTGGAAGCAGACCAGGCGCTGGAGCGAGCCGCCGCCGCGGCCGCC
GTCATGGGTCCCGCTCTCCTGTTGCTGGACAACGTAGACTTGCTGGTGCC
GGGCGTGGGCTCGCGGGTCATAGGCGCGAGCAGGGGGGAGGTGGACGGGT
CGCTGGCGCGCTGGGTGGCGAGGGTGGGCGAGCGCGAGGGCTGGGAGGGG
TCGCCGGGCTGGAGCTCGCCATGTGGAGGCAAGCCGGGGAGGGTCATGGT
GGTGATGACGGCCCGCTCCGGCTGGTGCCCTGGCCTCTTCGGGGTGGACT
GCCGCCTCTCCCTGTCGGCCGGCTCGGAGTCTCGGGGCTGCCAGGCCTCC
CTCTTGGCCCGGTGTTGGGAGCAGGGCGGGGTGAGGGCGGGGCAAGGCGA
CCTGGAGGCTTTCCATGCGGGGCGCGACCCTGCGCGTCTTGAGCCAGCCT
ACACCCCCTCGGAGGCGGACTGGGTGGCTGTGGCGCGGCTCTGCCAGGGT
TTCTCCCTGGGGTCCATCGCGGCCATGGCGCGGCGAGCGAAGAGGCGCTT
GGCCAGCCCGGCCCCCGGCAGCAATAGAGGAGCGGCCGAGGACCCTGGAG
AGTCATGGCGGGCCGCTTTCACGCAGGCTGTGGCCGAGAGTCGAGCCCAG
CAGCTGGCGCGTGGAACGGGCATGACAACCGTCCTGAGGGTAGAGCCCCC
GGTGACATGGACCGAGGTGGGGGGCCAGGCGGCGGCCAAGGAGGCAGTGC
GGGAGATGATAGTCTGGCCCATGGCGAGACCCAAGGCTTTCGCGCGCCTC
GGCATCGACCCTCCCGCGGGGCTCCTCCTTTATGGCCCCCCTGGGACTGG
GAAGACGCTGATCGCGAAGGCGGCCGCCTGTCAGTGCGGGGCCGGCTTCA
TGTGGCTGCGGATTACGGACGTGGTGAGGGGCGAGGTAGGTACGGGGGAG
AAGCTCCTGCGAGAGGCCTTCCGGGTAGCCCAGGAGAATCGACCTGTGGT
TATTTTCATTGACGAGTTCCAAGCACTTTTCAGCGCGCGCGGGGGGGGCG
GAGGCGGGGGTCGTCTGGCGTCCCAGTTGCTCCTCTCGATGGACGCACTG
CGCCGGGAGCACGGGCGGGAAGGGGAGGTCGGCGAGGAGGCTGCCGGCTT
TGTCTCGGTGCTGGCGGCGACCAACGCCCCTGAGGCCATCGACTCCGCCT
TTCTGCGGCCCGGGCGCTTCGACAGGCTCGTCTACGTGGGGTTGCCAGAC
CAGCAGGATCGGGCAGACATCTTGGACAGGTGGCGGGAGCGCATGCGGTG
GGCGGAGGACATGGGGGTTACCGAGCTGGCAGAGCAGACGGAGGGCTTTT
CCGGGGCAGACCTGGCGAATTTGATGCGGCGGGCGGCGCTGCATGCCTTG
GCTGCCCATAAATCGCCTCCATGGCCGGACGGAGGCGGCCGCGATGGAAG
GGCTAGCCAGGGCGGAAGTAGTGAGGCTGCTGTCCCCCTGCCCCTGATTA
GGCGCGAGGACGTGCAAGCGGCCCTTAGGACGTGCCGTGCCACGACGTCG
CCGGAGAGCCTGTCCAAATTTGAGGCCTACCGCCGTTTGCACGGTGGATC
GGGAGAGTGAGAGGCTTGGAGGGCCGGGCGAGGGCAGGACAGGCATTCCA
CACAGTTTGCACATAGGACGAGCTACGTGGGAGCATAGGCAGATGCCAAT
TAGTAGTCATTTACAGTCATGAGAACATTGACAAGGCAGTAATAAGTCAC
TTATTAGTCAATTGG
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protein sequence of rna9693

>rna9693-protein ID=rna9693-protein|Name=rna9693|organism=Nannochloropsis gaditana|type=polypeptide|length=114bp
MMAASYPAAYTYGAVEEVHDRTALLKGTIRLTEETNQLAAGIGEDMRGQR
VALEDGSTRIREMKGFAGEARRILNQMARRAAWHRATLWGIIVFLSLCIG
LTLYRLFTNRGHII
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mRNA from alignment at KK037255.1:176454..177260+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9693 ID=rna9693|Name=rna9693|organism=Nannochloropsis gaditana|type=mRNA|length=807bp|location=Sequence derived from alignment at KK037255.1:176454..177260+ (Nannochloropsis gaditana)
gccctcttttcttcctgcaCACAGCCCTGCTCGCACTCTCCTCGTCGCGG
GTTCCGTGGTGGCATGATGGCTGCGAGCTACCCGGCGGCATATACATAcg
gggcagtggaggaggtggtgagttGAAAGTGTGGGGGGGATCGAAGCTCC
TGcagcctccatttccacacCGGTGGCGCCTTCAGTCAGACACGTGCACC
TCGGGCCCTGTTTCTAAAATCCTGACATATCACACGCACACGATAGCATG
ATCGTACTGCCTTGCTGAAAGGCACGATCCGCTtgacggaggagacgaaC
CAGCTGGCGGCGGGGATAGGGGAGGACATGCGCGGTCAGCGGGTTGCCTT
GGAGGACGGTTCCACTCGCATACGGGAGATGAAAGGTTTTGCTGGCGAAG
CCCGCAGGATTCTTAATCAAATGGCACGACGAGCGGCTTGGCATCGTGCA
ACTTTGTGGGGTATCATTGTTTTCCTCTCGCTGTGTATCGGCTTGACGCT
GTATCGTCTCTTCACGAATCGCGGGCACATAATATGACAAGAAAGAGTGC
CAGCCTCGGTCAAACACGGGACTGTGCAGCCATTGAAGGAAACAACCAAA
TCATCCATTTATAACAAATAATCAATGCCTTGGAAAAGAGCGGTTTGTCT
GTTTACTCGATTGGTTCAGTGCTGAAGAAGTCTCCCCTAGCATGGCTAAG
GGACTTCTCATGAGAGCTCTCACGCCATACATAGCTTCTCTGCCGGCTCA
TGCTCGATCTGAACATTGCTTAGCCCCGAACCTTTCGGCGATACGGACGA
ATTTCCC
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Coding sequence (CDS) from alignment at KK037255.1:176454..177260+

>rna9693 ID=rna9693|Name=rna9693|organism=Nannochloropsis gaditana|type=CDS|length=690bp|location=Sequence derived from alignment at KK037255.1:176454..177260+ (Nannochloropsis gaditana)
ATGATGGCTGCGAGCTACCCGGCGGCATATACATAcggggcagtggagga
ggtgCATGATCGTACTGCCTTGCTGAAAGGCACGATCCGCTtgacggagg
agacgaaCCAGCTGGCGGCGGGGATAGGGGAGGACATGCGCGGTCAGCGG
GTTGCCTTGGAGGACGGTTCCACTCGCATACGGGAGATGAAAGGTTTTGC
TGGCGAAGCCCGCAGGATTCTTAATCAAATGGCACGACGAGCGGCTTGGC
ATCGTGCAACTTTGTGGGGTATCATTGTTTTCCTCTCGCTGTGTATCGGC
TTGACGCTGTATCGTCTCTTCACGAATCGCGGGCACATAATATGAATGAT
GGCTGCGAGCTACCCGGCGGCATATACATAcggggcagtggaggaggtgC
ATGATCGTACTGCCTTGCTGAAAGGCACGATCCGCTtgacggaggagacg
aaCCAGCTGGCGGCGGGGATAGGGGAGGACATGCGCGGTCAGCGGGTTGC
CTTGGAGGACGGTTCCACTCGCATACGGGAGATGAAAGGTTTTGCTGGCG
AAGCCCGCAGGATTCTTAATCAAATGGCACGACGAGCGGCTTGGCATCGT
GCAACTTTGTGGGGTATCATTGTTTTCCTCTCGCTGTGTATCGGCTTGAC
GCTGTATCGTCTCTTCACGAATCGCGGGCACATAATATGA
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Synonyms
Publications