EWM20996.1, cds9662 (CDS) Nannochloropsis gaditana

Overview
NameEWM20996.1
Unique Namecds9662
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:176517..176570 +
Alignment locationKK037255.1:176700..176990 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20996.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100081g10.743.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:176517..176570 +
KK037255.1supercontigKK037255.1:176700..176990 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM20996.1 vs. NCBI_GenBank
Match: gi|585100994|gb|EWM20996.1| (hypothetical protein Naga_100081g10 [Nannochloropsis gaditana])

HSP 1 Score: 232.261 bits (591), Expect = 2.873e-77
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0
Query:    1 MMAASYPAAYTYGAVEEVHDRTALLKGTIRLTEETNQLAAGIGEDMRGQRVALEDGSTRIREMKGFAGEARRILNQMARRAAWHRATLWGIIVFLSLCIGLTLYRLFTNRGHII 114
            MMAASYPAAYTYGAVEEVHDRTALLKGTIRLTEETNQLAAGIGEDMRGQRVALEDGSTRIREMKGFAGEARRILNQMARRAAWHRATLWGIIVFLSLCIGLTLYRLFTNRGHII
Sbjct:    1 MMAASYPAAYTYGAVEEVHDRTALLKGTIRLTEETNQLAAGIGEDMRGQRVALEDGSTRIREMKGFAGEARRILNQMARRAAWHRATLWGIIVFLSLCIGLTLYRLFTNRGHII 114          
BLAST of EWM20996.1 vs. NCBI_GenBank
Match: gi|298707022|emb|CBJ29830.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 57.7658 bits (138), Expect = 1.353e-8
Identity = 31/91 (34.07%), Postives = 49/91 (53.85%), Query Frame = 0
Query:   24 LLKGTIRLTEETNQLAAGIGEDMRGQRVALEDGSTRIREMKGFAGEARRILNQMARRAAWHRATLWGIIVFLSLCIGLTLYRLFTNRGHII 114
            LL  ++ +  ET+ +A  +   + GQR  LE    R+ +M+G   EAR  L +M ++A   +  L+  I  LS+ I L +YR  TN GH+ 
Sbjct:   17 LLDDSLAVQNETSNMADDVMARLFGQRETLESAQQRLGDMRGMTDEARLHLKEMEQKALRQKICLYLTIALLSILICLVIYREVTNGGHLF 107          
BLAST of EWM20996.1 vs. NCBI_GenBank
Match: gi|673047525|ref|XP_008877723.1| (hypothetical protein H310_12449 [Aphanomyces invadans] >gi|574466654|gb|ETV93682.1| hypothetical protein H310_12449 [Aphanomyces invadans])

HSP 1 Score: 58.151 bits (139), Expect = 8.019e-8
Identity = 27/87 (31.03%), Postives = 49/87 (56.32%), Query Frame = 0
Query:   25 LKGTIRLTEETNQLAAGIGEDMRGQRVALEDGSTRIREMKGFAGEARRILNQMARRAAWHRATLWGIIVFLSLCIGLTLYRLFTNRG 111
            L+ + R+ +ET Q+   + + +  QR  L     ++++ +  AG+ARR+L +M++R   H+ TLW +I+ L + I L  Y  F  R 
Sbjct:  136 LEQSKRIVQETEQIGISVMDTLAQQRETLLSAHDKVKDTRETAGDARRVLQRMSQRMLTHKLTLWFVILVLIVAIVLVFYHDFIKRS 222          
The following BLAST results are available for this feature:
BLAST of EWM20996.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585100994|gb|EWM20996.1|2.873e-77100.00hypothetical protein Naga_100081g10 [Nannochlorops... [more]
gi|298707022|emb|CBJ29830.1|1.353e-834.07conserved unknown protein [Ectocarpus siliculosus][more]
gi|673047525|ref|XP_008877723.1|8.019e-831.03hypothetical protein H310_12449 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9693rna9693Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications