rna9690, rna9690 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9690
Unique Name	rna9690
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4014
Alignment location	KK037255.1:168157..169117 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100081g6.760.mrna
Orig protein id	gnl\|cribi\|Naga_100081g6.760
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037255.1	supercontig	KK037255.1:168157..169117 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100081g6	gene9411	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21013.1	cds9659	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9690	rna9690-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037255.1:168157..169117-
coding sequence from alignment at KK037255.1:168157..169117-

mRNA sequence

>rna9690 ID=rna9690|Name=rna9690|organism=Nannochloropsis gaditana|type=mRNA|length=4014bp
ATGCTGGGCACAACTTCTGTGAAGCCACCGACGGTGGGAGGGGCTTGGGC
TCAAGGTTCTCTCTCCCTAAAACCCGAAGACGATGGTAAGGCTTCAGGCG
GCGGAGGAGGAGGCACTCTCGCGACGGGTTCACCCCCAACGGCGGCGAAG
AAGAAAGTCATCCAGTTCTCTCGTGAGCAGCTTTTGGCCCTCCGCCGCCC
CTCACGGCTCCCGACGGACATGGCGGAGATTCCCACCATCATTAGCGTGG
AGCCTTTGGAGCCGATGGGGGGAGGGGGGCCGTTGGACAGGGAGGAGACC
AGCAGGCATTGTGAAGGAAGAGGCCATCCTCTGGGACGACGTGGGGGATG
GGAAGGGGGGGGCGGGGCGGGGGCGGGGGGCGCAGGAGGAAGTGGGGACC
AGGATTTCTTCGAGACCATGGCCGAAAGCACGCGCAAGTTCCACGCGGAG
CGAGAAGCCTTCCTGGCTCAGCAACGGAAGATGGAGGGAAAAGAGGCGGG
CGTGGAGGAGAGAGGAATGGAGCAAGAGTCGCATGATAATGCTGAGACGT
TTGGGGAGGGGGCGATGGGACCAGGGGATGGTGGTGGTGGGGGGTTGGGT
GGGATCCAGGAGGGGCTGCGGGAGCTGGGGGTGCGGGAGGGAGGAGGGCG
AGGCAAGGAGTCGGGGCTACCCCCGGCGACCCCCACCCCCGCGGAGGAGG
GCGAGGCAGGGCTCAGTCTCTTGGCACGCTTCGGTCTCGTTCCGAGTCGG
CCCCCGGGACGCGAGGCCGCGGGCCCCGCCTTCTCCTCCTCCCCCATCGG
GTTCCCAGACCCCGACCAGCATCATCAGACCCCTCCGGTGCACGCCCACG
TCCTAGGTCAAACCGGCTTACCGCAGCCCCAGCAGCCGCCGCAACCAGGG
CATCTGCGGGTAGGGCACCAAGGAGGGGACCCTGTAGCCCCATCGGTCGT
CGGTACCCCCGTTAACCACCTCCAGCGCCTCGGCTTGGCACTGCCGCCAC
AGGGATCAACGGTCCCGGACTCGCAGCAGCAGCGCCTGTTGCAACAGCAG
CAGCTTCAACAAGAGCAGCAACAGCAGCAGCAGCGCATGTATCAGCAGCT
ACGGGCTTTGCAGCAGCAACAACAACAGCAACACCATGAACAACAGGGAC
GACAGCCGCAACCACCACCACAACAGGACCAACAAGAGCGAAAGCAGCAG
CAACAGGAGCAACAACAGCAACAACAGCAGCAACAGCAACAGCAGCAACA
GCAACAGCAGCAACAGCAGCAACAGCAGCAACAACAACTTTTGCAACAAC
ACCTAGCACGAATGCACCAGCAACAACACTCTCAAATGTCCCCTTCTCCT
CAGTCCCCCTCGCAAGCCCTGTCACGACAGCAGCATCCCCCCTCCCGAGG
GCCTCCAGACGCCTGGTTCTACCGTGACCCCCACGGCAAGGTCCAGGGGC
CCTTCAAGACGGCGGATATGCGCCAGTGGCACGAGGCAGGTTACTTCAAG
CCCGGGCTCTGCATGCGCCTGGGAGACACGGAGGGCGAGTTTCGGCCCCT
GCAAGAGCTCTACGCCGACTTGAGCGATGCTTTCATGCGCCCACCCTCCG
TCGCTCCCACGCCTCAACAGCCCCCAGCACCCCAGATCCTCCATCCATCG
CAGCCACAGCAGCAGCCACCACAGCAGCAGCAAGCGGGTCTGAGTGGCCC
TCTTTCCCCTGCCCAGCAGCAGCACCTGGCGATGCTGCAGCAGATGGACC
TTCTGCAGACACCTCAGCAAATGCAGCAGGCACTCTACCAGGTCCGACAG
ATCGCTCTACGGGATGCACAGCAGCAGGAGCAGCTTCGGCACCTTCTTCA
ACTACAACAACAACAACAATCACAACCACCACAACAACAACAACAGCAAC
AACAACAACAACAACAACAGCAGCAGCAGCAACAACAACACCAACACCAA
CACCAACACCAACAACAACACCACCAACAACAACAACAAAAACAACAACA
ACAACAACAACAAAAACAACAACAACAACAACAATCACCACCACCACCAC
CACCACCACCACAGCAGCACCAACATCAACATCAACAACAGCATCAGCAG
CAACAGCAGTTGTACCAACAGCAACAGCTTCATCACAAAATGCAGCAGCA
GCAACAGCAACGACAACAACAACATCAACAACAACATCAACAACAACAAC
CACAACAAGCACCACAACCACAACAACCACAACCACAGCAGCAACAACAG
GGTCAGGAAGACATTCACGGGCCGCGATCAGGGCAATCGGGGCCTCGCGA
CGATGAGCACCGGAGGGCGGCAGAAGAATATGCAATGTTGGTCAGGCTGG
AGGCTGAGGAGCGTGTCAGGCAAGACACGATGCAACGGCAACGCCAGCAA
GAGCAAGAAGCAGCCAGAGCGGCAGCAGCGGCAGAGGCGGCAGCAGCGGC
GGCGTCAGCGGCGGCAGCAGCAGCAGAGGCAAAAGAGAAGAGGGACTCAC
ACGCGGCGGAGGTGAAGAGGAGGAAGGAGGTGGAGGAAGCTGCCCGCGTG
CTACGTCAAAATCAGCAGAAAGAGAAGGAGGAGGAGAAGGCGAGGCAGAA
GGAAAGAGAGGAAAAGGAGAGGGAGAAGGGGCGACATAGCCAGGTAGGCG
GGGAGAACAGCGACCCATATCACAGGGGTCACCTCGATGACGGGGCCGCG
GGCACCTCGGAAGAAGAACGCGGATCGGCGGACCAGAAACACGCGCCTGT
GGCCCCATGGTCGGGGAGCACTTCCGGGACCCCTCAAAAAAGCTTGACGG
AGATCCAGAAAGAGGAAGAGCGGCGCCAGCGGGCCTTGAAGGAAGCGCGG
ATGGCTGCTTCGGGTGGGAAAGGGGGGGGCATGTCTTGGGCACGCGCCAC
GACCACCCAGGCGGCGCATGCCCGTCCCAAGAGCTTGGCGGAGATCCAGG
AAAAAGAGGCCTCGGCGGCTGCCTACGCCTCGAATCCCGCTGTCTCCGCC
GCCGACAAGCGGGTGGTTTCTCCGGCCATTGCCCGTTCCACGTCTACCTC
TACCAATGGCAGCACGGGAAACGACAGCGACGGCGCTCCGCCCCCTCCGT
CGGGACCCATTCATGTTCAGCTTCCCGTCTCCCAGGGCAAGCTTTCCCAA
CGCGAGAAGAAACTCTTGCTTGCTGAGCAACAGGCAGAGGCGGTCCGACA
GCAGCATCTCTTGCTCCAGCAGCAGCAACAACCGGGTGGGGCCTGGAATA
GGAACAGGGATGCCTCGGCAAAGGGAGGCGGAGGGGGAGGCACGGGTCTT
CTGACCGCCATTCAGGGCCGGAGGCGGTGGGATTGGGGGGGGGAGGCGCC
GGCATGGCAAGCCAAGGGAAAGCCCGTCAAGTCCTTACTAGAGATTCAAG
AGGAGGAGGCGCGACGCGCGGCGCAAGAACCTCACCAAGCGAAAGGCTGG
GCAGCGCGCGCCGGTGTCAACGCTCCTCCTCAGCGGACGTCTGCCCCTCT
TGCCGGTGCCAGCCTTGGGCAGGTAAATGGGAGACGTCCCGGGTGGGTGG
TGCCAGCACGGCCCCCTTCTCATGAGAGAGGGAGCGCTGGTGCGCACGCG
GCCTCACATGAGGATTTCTGGGGACCGAAAGCTGAGGAGAAAGCCAATGC
ACAGCGGGCCCCTGCCCGGCCCGTCCAAGCCCCCGTGCCAGCGCCTGCCC
CGCCTCCCTCCCGCACCGACGACTCCTTCGGCTCCGCTATGCCGTCCGAG
CTGGCAGCATGGTGCGGCAGCGAGCTGCGCCGTATTGCCAACAACGACGA
CCTGACGCTCATGTCATTTCTCTATACGGTCGAGAGCCCGGCGGAGACGC
GGCAGTATCTTTCACAATATCTGGGTTCCAAGCCGGAGGTGGTGAACTTT
GCCTCCGAGTTTATCAAGAGGAGGGCGAGCTCCAGGGATAAGGGCATGTA
CATAGGTGGATGGTGTGAAGGTGGATGGAGACACGATAGAGGTATAATCC
AGCACGTGCATTGA

protein sequence of rna9690

>rna9690-protein ID=rna9690-protein|Name=rna9690|organism=Nannochloropsis gaditana|type=polypeptide|length=240bp
MWVLLRALIEAGKFPLREEAPLVLRLVEEGPLELTEAVLAGPGEVSERTI
VCLLRRLLRPQEHLLTPISASSPATQEHRDAGQPHKGDEEGIPAREVARL
AGLAVRRPCCRAFLRTALAVEMDGPSAALLLVLLQALLEEAVGAGGKGRP
TEEAVLTWLESLLDAKFVALVVEGKRERAGEAWGDEGVLRRVLASTQERI
QAAALSCQALEVVEGYIAQFRRAGESLQVIPDYSLDVLPV

mRNA from alignment at KK037255.1:168157..169117-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9690 ID=rna9690|Name=rna9690|organism=Nannochloropsis gaditana|type=mRNA|length=961bp|location=Sequence derived from alignment at KK037255.1:168157..169117- (Nannochloropsis gaditana)
GCGAGTGGTCATGTGGGTGCTGCTGCGGGCTTTGATCGAAGCCGGCAAGT
TCCCACTCCGAGAGGAAGCACCCCTCGTGCTGCGTTTGGTCGAAGAGGGC
CCGCTAGAGCTCACAGAGGCCGTGTTGGCCGGGCCGGGGGAGGTGTCGGA
GCGGACGATTGTCTGCCTGCTCCGTCGGCTCCTCCGCCCGCAGGAGCACC
TCCTAACCCCCATTAGTGCCTCGTCACCGGCCACGCAAGAGCACAGAGAT
GCTGGGCAACCTCATAAGGGAGATGAGGAGGGGATCCCAGCGCGGGAAGT
GGCGAGACTGGCGGGGCTGGCTGTCCGCAGACCCTGCTGTCGAGCCTTCC
TGCGCACTGCCCTCGCCGTGGAAATGGACGGCCCCAGCGCTGCCTTGCTG
CTCGTGCTGCTACAGGCGCTTTTGGAAGAGGCTGTGGGCGCGGGCGGGAA
AGGAAGGCCAACGGAGGAAGCGGTGTTGACCTGGCTGGAGAGCCTGCTGG
ACGCCAAGTTTGTGGCCTTGGTAGTGGAGGGGAAGCGGGAGAGAGCGGGA
GAGGCATGGGGGGACGAGGGGGTCCTACGCCGGGTGCTGGCCTCGACGCA
AGAAAGAATTCAAGCGGCGGCGCTCTCGTGCCAGGCCTTGGAGGTCGTGG
AGGGCTACATCGCGCAATTCAGACGGGCGGGAGAGAGCCTGCAGGTGATC
CCGGATTACTCCTTGGACGTGCTCCCAGTCTAAGCCCCATGTCAAGGTAA
TGCTTGAACAGGGATGGCACCGGCGGGGCGGGGTAGGATATTTGCATAGG
GGAGCTGCCGCCCTTCATTCCGGAGGGTGGAAGAGACGAGCGTGGTGGTG
GATCGGGAACTTGGTTCACAGACTACGAAATAGAGGGGATCTGTAAGAGG
CATAACAGGTGCCTCCCACAAATCCAGCGCAAAGCATCAGAGAAACGAAA
TGAAATCATCC

Coding sequence (CDS) from alignment at KK037255.1:168157..169117-

>rna9690 ID=rna9690|Name=rna9690|organism=Nannochloropsis gaditana|type=CDS|length=723bp|location=Sequence derived from alignment at KK037255.1:168157..169117- (Nannochloropsis gaditana)
ATGTGGGTGCTGCTGCGGGCTTTGATCGAAGCCGGCAAGTTCCCACTCCG
AGAGGAAGCACCCCTCGTGCTGCGTTTGGTCGAAGAGGGCCCGCTAGAGC
TCACAGAGGCCGTGTTGGCCGGGCCGGGGGAGGTGTCGGAGCGGACGATT
GTCTGCCTGCTCCGTCGGCTCCTCCGCCCGCAGGAGCACCTCCTAACCCC
CATTAGTGCCTCGTCACCGGCCACGCAAGAGCACAGAGATGCTGGGCAAC
CTCATAAGGGAGATGAGGAGGGGATCCCAGCGCGGGAAGTGGCGAGACTG
GCGGGGCTGGCTGTCCGCAGACCCTGCTGTCGAGCCTTCCTGCGCACTGC
CCTCGCCGTGGAAATGGACGGCCCCAGCGCTGCCTTGCTGCTCGTGCTGC
TACAGGCGCTTTTGGAAGAGGCTGTGGGCGCGGGCGGGAAAGGAAGGCCA
ACGGAGGAAGCGGTGTTGACCTGGCTGGAGAGCCTGCTGGACGCCAAGTT
TGTGGCCTTGGTAGTGGAGGGGAAGCGGGAGAGAGCGGGAGAGGCATGGG
GGGACGAGGGGGTCCTACGCCGGGTGCTGGCCTCGACGCAAGAAAGAATT
CAAGCGGCGGCGCTCTCGTGCCAGGCCTTGGAGGTCGTGGAGGGCTACAT
CGCGCAATTCAGACGGGCGGGAGAGAGCCTGCAGGTGATCCCGGATTACT
CCTTGGACGTGCTCCCAGTCTAA

Synonyms

Publications