EWM21013.1, cds9659 (CDS) Nannochloropsis gaditana

Overview
NameEWM21013.1
Unique Namecds9659
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:168385..169107 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21013.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100081g6.760.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:168385..169107 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM21013.1 vs. NCBI_GenBank
Match: gi|553182903|ref|XP_005853804.1| (hypothetical protein NGA_0370420 [Nannochloropsis gaditana CCMP526] >gi|422295253|gb|EKU22552.1| hypothetical protein NGA_0370420 [Nannochloropsis gaditana CCMP526] >gi|585101011|gb|EWM21013.1| hypothetical protein Naga_100081g6 [Nannochloropsis gaditana])

HSP 1 Score: 462.225 bits (1188), Expect = 3.493e-164
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0 
Query:    1 MWVLLRALIEAGKFPLREEAPLVLRLVEEGPLELTEAVLAGPGEVSERTIVCLLRRLLRPQEHLLTPISASSPATQEHRDAGQPHKGDEEGIPAREVARLAGLAVRRPCCRAFLRTALAVEMDGPSAALLLVLLQALLEEAVGAGGKGRPTEEAVLTWLESLLDAKFVALVVEGKRERAGEAWGDEGVLRRVLASTQERIQAAALSCQALEVVEGYIAQFRRAGESLQVIPDYSLDVLPV 240
            MWVLLRALIEAGKFPLREEAPLVLRLVEEGPLELTEAVLAGPGEVSERTIVCLLRRLLRPQEHLLTPISASSPATQEHRDAGQPHKGDEEGIPAREVARLAGLAVRRPCCRAFLRTALAVEMDGPSAALLLVLLQALLEEAVGAGGKGRPTEEAVLTWLESLLDAKFVALVVEGKRERAGEAWGDEGVLRRVLASTQERIQAAALSCQALEVVEGYIAQFRRAGESLQVIPDYSLDVLPV
Sbjct:    1 MWVLLRALIEAGKFPLREEAPLVLRLVEEGPLELTEAVLAGPGEVSERTIVCLLRRLLRPQEHLLTPISASSPATQEHRDAGQPHKGDEEGIPAREVARLAGLAVRRPCCRAFLRTALAVEMDGPSAALLLVLLQALLEEAVGAGGKGRPTEEAVLTWLESLLDAKFVALVVEGKRERAGEAWGDEGVLRRVLASTQERIQAAALSCQALEVVEGYIAQFRRAGESLQVIPDYSLDVLPV 240
[Close]
BLAST of EWM21013.1 vs. NCBI_GenBank
Match: gi|553189085|ref|XP_005854928.1| (hypothetical protein NGA_0370410 [Nannochloropsis gaditana CCMP526] >gi|422294130|gb|EKU21430.1| hypothetical protein NGA_0370410 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 463.381 bits (1191), Expect = 1.337e-163
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0 
Query:    1 MWVLLRALIEAGKFPLREEAPLVLRLVEEGPLELTEAVLAGPGEVSERTIVCLLRRLLRPQEHLLTPISASSPATQEHRDAGQPHKGDEEGIPAREVARLAGLAVRRPCCRAFLRTALAVEMDGPSAALLLVLLQALLEEAVGAGGKGRPTEEAVLTWLESLLDAKFVALVVEGKRERAGEAWGDEGVLRRVLASTQERIQAAALSCQALEVVEGYIAQFRRAGESLQVIPDYSLDVLPV 240
            MWVLLRALIEAGKFPLREEAPLVLRLVEEGPLELTEAVLAGPGEVSERTIVCLLRRLLRPQEHLLTPISASSPATQEHRDAGQPHKGDEEGIPAREVARLAGLAVRRPCCRAFLRTALAVEMDGPSAALLLVLLQALLEEAVGAGGKGRPTEEAVLTWLESLLDAKFVALVVEGKRERAGEAWGDEGVLRRVLASTQERIQAAALSCQALEVVEGYIAQFRRAGESLQVIPDYSLDVLPV
Sbjct:   65 MWVLLRALIEAGKFPLREEAPLVLRLVEEGPLELTEAVLAGPGEVSERTIVCLLRRLLRPQEHLLTPISASSPATQEHRDAGQPHKGDEEGIPAREVARLAGLAVRRPCCRAFLRTALAVEMDGPSAALLLVLLQALLEEAVGAGGKGRPTEEAVLTWLESLLDAKFVALVVEGKRERAGEAWGDEGVLRRVLASTQERIQAAALSCQALEVVEGYIAQFRRAGESLQVIPDYSLDVLPV 304
The following BLAST results are available for this feature:
BLAST of EWM21013.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|553182903|ref|XP_005853804.1|3.493e-164100.00hypothetical protein NGA_0370420 [Nannochloropsis ... [more]
gi|553189085|ref|XP_005854928.1|1.337e-163100.00hypothetical protein NGA_0370410 [Nannochloropsis ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9690rna9690Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications