rna9688, rna9688 (mRNA) Nannochloropsis gaditana

Overview
Namerna9688
Unique Namerna9688
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1271
Alignment locationKK037255.1:160971..162639 -

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Properties
Property NameValue
Productribosome biogenesis protein brx1
Orig transcript idgnl|cribi|Naga_100081g4.763.mrna
Orig protein idgnl|cribi|Naga_100081g4.763
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:160971..162639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100081g4gene9409Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21016.1cds9657Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9688rna9688-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9688 ID=rna9688|Name=rna9688|organism=Nannochloropsis gaditana|type=mRNA|length=1271bp
CCGTGATGTTTTTGGAGGCTTTACAATGGGATTCCTCCACGCCTCCCTTG
CTGCTGTGCGTGCATTATGCCAGCCCTTCTCGTGCACTGACGCTCTCCGA
ATCAATTTAACAGGAGGAGTAGAAGGCCTGTTAAATTGGTGGGCCGCAGA
GGGTGACTTTGCTTTGCGAAGTCCGTGCTCGCGACCTTGGCCTTGAACGT
GCACTATGGCAGCTCGCGAAACCTCCCCCTTCCAAGCCGCAGATGCTCCC
ATTTGGAGACCGGAAATGGCGGTGCGGCAAAATCCGTACAGGTACCTGGA
CCATCAGAAAGGCACGATTGGCATCCTAGACATCCGGCTCATAGACGGCC
GTGACCTGGACTCGACGGGAAGAGGCGAGTCCGGGCGGAGTGCGAGCGTC
TCCCCTCAAGTCGTAATACGAGTCCCCGCCGAGGAGGCCAGATCCTCGGT
GGTTCCCAGGAATGCCCACCCGTCCTGGCAAGAGCGCTTCACCATGAATT
TGAAGAAAGGTGTGCTCCAAGAAGGTGCGCCAGTCTTGGTTGTCTTCCAG
GCATTGGATGCCGCATCGTGGCGGAGCCCGCTGGGGGGAAGCAAGGGCCG
CGACCTGGGCTCCGGCTCCTTGGACATTTTGCCCCTCCTGAACGGGTCGC
GCGGTAGCCACGTGATGGACGAGTGGGTCTCGCTCAGTCCGGGGCCCGGG
CGCCTGCACGTGGTGGTGGAGTACGAGCCCGTGGGCATGGTGCCGGAAAT
GGACGACGTGGTCTTCTTCGAGGCCTTCGCGCGCTCTCCTCGCTCCCTGG
TCCTCCCCACGAACGAGCCCATGGTCGTGCGGGCGGTCTCCGGTGCCTAC
CTCCTGGTCGGCTTCCGCACCCCCACCGCCCGACAGGCCCGCGGCCCCGA
GGCGGCGCCCGAGTGCCGGCTCAGGGTGCACCGGCAGACAGTCTTCGTGA
TCGAGCGGCACACCCTCCTGGACGCGGCCTGGCACTCGGTCATAGACGCG
GCCGACATGGTGCAGGCCGTTCCCCCCGTTCGCTGGGCCAAGAAGCAGCT
CCAGCCCTACGCCAAGTACGCCCAGGTGCTCGCGCGGCCTGCCCTCACCT
CCCTCCACGTCACCTTCGCGGCGGCGCGCCTGGCCATGCGGAGCGGGATG
GCGGCCTTGGGGGGGGCGACCAGCACCGTCTTCGGGGATGACTAGGGCGC
GAGGGGGAAGACGGAGGGCGTGTAAATAAGACAAGGTGGGAGGTAGAGAT
GGAGCGGGGGTGGGTCAAGGG
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protein sequence of rna9688

>rna9688-protein ID=rna9688-protein|Name=rna9688|organism=Nannochloropsis gaditana|type=polypeptide|length=474bp
MVRTTQKRKAAMTSAGTTSAKPAKKKQSTTISSKQEQAESRNRRNKDENE
ALTRVEDESEEQEDEQENLVRRSSTRMGGMHGLMLRGRADGSSSSDSGAD
EDENDENSVSDSADATARARNGGGSKKRLLSAASSAGRASNVSKPMTGKK
DPDVQNDFSNTSSHPVVGAASSSTVKYDGSYKNRQRVLVFCSRGVTARYR
HLLEDLRKLIPHHKKDVKLDCKGDLQVINEIAEVKSCNNCLYLEARKRQD
LYLWLSKTPLGPSIKFSVLNVHTLDELRLTGNAMLGSRPVLSFDEAFDAR
PHTRVMRALLVDAFGTPRGHPKSKPFVDRVLAFALADGKVWVRNYQIVDA
APAATAADPEAAAKAEAKAAARAAAGRKKEGGKGEAGEGELTSLVEIGPR
FVLNPIRVFAGSFGGPTLYQNPDFTSPNFVRAEKKRAEGARLSAKMKADG
LRKERKAQAVLPKDELQELFRVKV
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mRNA from alignment at KK037255.1:160971..162639-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9688 ID=rna9688|Name=rna9688|organism=Nannochloropsis gaditana|type=mRNA|length=1669bp|location=Sequence derived from alignment at KK037255.1:160971..162639- (Nannochloropsis gaditana)
CATGCCTGCGTACCTCTCACAGAGGTGTCGGTGTACACATATATACAGGT
ATCCAAGTTTTTCAAGGGGATTTGCTGGTGTCGTTTGTGGTCTCAAATAT
GGTCAGAACGACACAGAAACGGAAGGCGGCTATGACTTCTGCTGGTACAA
CATCTGCGAAGCCTGCCAAAAAAAAACAAAGTACCACTATCAGCAGCAAG
CAAGAGCAAGCAGAATCCCGAAATAGACGGAATAAGGACGAAAATGAGGC
TCTCACTCGGGTAGAAGACGAATCCGAGGAGCAGGAAGACGAACAAGAGA
ACCTTGTTAGGCGCTCCTCTACCCGCATGGGTGGAATGCACGGTTTGATG
CTACGGGGCCGCGCGGATGGAAGCAGCAGCAGCGACAGTGGAGCCGACGA
GGATGAGAATGATGAGAATAGTGTCAGCGACAGCGCGGATGCAACGGCGC
GTGCCAGGAACGGTGGGGGGAGCAAAAAACGCTTGCTCTCTGCCGCCTCT
TCCGCAGGGCGGGCGTCGAACGTATCCAAGCCGATGACAGGAAAGAAGGA
CCCTGACGTACAAAATGATTTCTCCAATACATCCAGTCACCCTGTCGTTG
GAGCCGCTTCGTCAAGTACGGTCAAATACGACGGTTCTTACAAGAATCGA
CAGCGTGTCCTGGTCTTTTGTTCGCGGGGCGTGACGGCGCGCTACCGCCA
CTTGCTGGAGGACCTGCGGAAGCTCATTCCCCACCACAAAAAGGACGTCA
AGCTCGACTGCAAAGGGGACTTGCAGGTCATCAACGAGATCGCGGAGGTC
AAAAGCTGCAACAATTGTCTGTACTTGGAGGCTCGGAAGCGGCAAGATCT
CTATCTGTGGCTAAGTAAGACACCCTTGGGGCCTTCTATCAAGTTCAGCG
TCCTCAACGTGCACACCCTCGACGAGCTCCGCCTCACGGGCAACGCCATG
CTCGGTTCCCGACCCGTGCTTTCCTTCGACGAGGCCTTCGATGCCCGCCC
CCACACCCGCGTGATGAGAGCCCTCCTGGTCGACGCCTTTGGGACCCCCC
GGGGGCACCCCAAGAGCAAGCCCTTTGTGGACCGAGTCCTGGCCTTCGCG
CTCGCGGACGGCAAGGTGTGGGTGAGAAACTACCAGATCGTGGATGCGGC
TCCGGCGGCGACGGCGGCGGACCCTGAGGCGGCCGCGAAGGCCGAGGCCA
AGGCCGCCGCCAGGGCGGCCGCAGGGAGGAAAAAGGAAGGGGGAAAGGGA
GAGGCGGGGGAGGGGGAGCTGACCAGCCTGGTAGAGATCGGGCCTCGCTT
TGTCTTGAACCCGATCCGCGTCTTCGCCGGCAGCTTCGGGGGGCCCACCC
TCTACCAGAACCCGGACTTCACCTCTCCTAACTTCGTGCGGGCGGAGAAG
AAGCGGGCAGAGGGGGCGAGGCTGTCGGCAAAAATGAAAGCGGATGGGCT
GAGGAAGGAGAGGAAGGCACAGGCAGTGCTGCCCAAGGACGAGCTCCAGG
AGCTTTTCCGGGTTAAGGTGTGAGGGCGGGCAGGGAAGGGGAAGCGAGAG
ACATGGAGGGCAGAGACTGCGCGCGACAGGCGGTCAGGGAGAGGACCGCG
CCCATACTTTGTGTCGCTGGCACGCCAACGGGAGCGCGAGTGAAAAGAAA
AACGTCACGCCTAATTGCA
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Coding sequence (CDS) from alignment at KK037255.1:160971..162639-

>rna9688 ID=rna9688|Name=rna9688|organism=Nannochloropsis gaditana|type=CDS|length=1425bp|location=Sequence derived from alignment at KK037255.1:160971..162639- (Nannochloropsis gaditana)
ATGGTCAGAACGACACAGAAACGGAAGGCGGCTATGACTTCTGCTGGTAC
AACATCTGCGAAGCCTGCCAAAAAAAAACAAAGTACCACTATCAGCAGCA
AGCAAGAGCAAGCAGAATCCCGAAATAGACGGAATAAGGACGAAAATGAG
GCTCTCACTCGGGTAGAAGACGAATCCGAGGAGCAGGAAGACGAACAAGA
GAACCTTGTTAGGCGCTCCTCTACCCGCATGGGTGGAATGCACGGTTTGA
TGCTACGGGGCCGCGCGGATGGAAGCAGCAGCAGCGACAGTGGAGCCGAC
GAGGATGAGAATGATGAGAATAGTGTCAGCGACAGCGCGGATGCAACGGC
GCGTGCCAGGAACGGTGGGGGGAGCAAAAAACGCTTGCTCTCTGCCGCCT
CTTCCGCAGGGCGGGCGTCGAACGTATCCAAGCCGATGACAGGAAAGAAG
GACCCTGACGTACAAAATGATTTCTCCAATACATCCAGTCACCCTGTCGT
TGGAGCCGCTTCGTCAAGTACGGTCAAATACGACGGTTCTTACAAGAATC
GACAGCGTGTCCTGGTCTTTTGTTCGCGGGGCGTGACGGCGCGCTACCGC
CACTTGCTGGAGGACCTGCGGAAGCTCATTCCCCACCACAAAAAGGACGT
CAAGCTCGACTGCAAAGGGGACTTGCAGGTCATCAACGAGATCGCGGAGG
TCAAAAGCTGCAACAATTGTCTGTACTTGGAGGCTCGGAAGCGGCAAGAT
CTCTATCTGTGGCTAAGTAAGACACCCTTGGGGCCTTCTATCAAGTTCAG
CGTCCTCAACGTGCACACCCTCGACGAGCTCCGCCTCACGGGCAACGCCA
TGCTCGGTTCCCGACCCGTGCTTTCCTTCGACGAGGCCTTCGATGCCCGC
CCCCACACCCGCGTGATGAGAGCCCTCCTGGTCGACGCCTTTGGGACCCC
CCGGGGGCACCCCAAGAGCAAGCCCTTTGTGGACCGAGTCCTGGCCTTCG
CGCTCGCGGACGGCAAGGTGTGGGTGAGAAACTACCAGATCGTGGATGCG
GCTCCGGCGGCGACGGCGGCGGACCCTGAGGCGGCCGCGAAGGCCGAGGC
CAAGGCCGCCGCCAGGGCGGCCGCAGGGAGGAAAAAGGAAGGGGGAAAGG
GAGAGGCGGGGGAGGGGGAGCTGACCAGCCTGGTAGAGATCGGGCCTCGC
TTTGTCTTGAACCCGATCCGCGTCTTCGCCGGCAGCTTCGGGGGGCCCAC
CCTCTACCAGAACCCGGACTTCACCTCTCCTAACTTCGTGCGGGCGGAGA
AGAAGCGGGCAGAGGGGGCGAGGCTGTCGGCAAAAATGAAAGCGGATGGG
CTGAGGAAGGAGAGGAAGGCACAGGCAGTGCTGCCCAAGGACGAGCTCCA
GGAGCTTTTCCGGGTTAAGGTGTGA
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Synonyms
Publications