rna9681, rna9681 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9681
Unique Name	rna9681
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3543
Alignment location	KK037255.1:143332..144438 +

Link to JBrowse

Properties


Property Name	Value
Product	expressed unknown protein
Orig transcript id	gnl\|cribi\|Naga_100271g4.8581.mrna
Orig protein id	gnl\|cribi\|Naga_100271g4.8581
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037255.1	supercontig	KK037255.1:143332..144438 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100271g4	gene9401	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9681	rna9681-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21023.1	cds9650	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037255.1:143332..144438+
coding sequence from alignment at KK037255.1:143332..144438+

mRNA sequence

>rna9681 ID=rna9681|Name=rna9681|organism=Nannochloropsis gaditana|type=mRNA|length=3543bp
ATGCCTCTCACAGACAACGAAATGGCCTCCCTGCACTTCTCCCGGACCCA
CGTGCTGCAGCGCCTCGCCTTCAAATACTTTCAAAACAGTCTCAAAGACT
TGGCCTTCGCGTCTTCGGCCGCTGTGGGAGACGCCACCGTCCTCGCTTCC
TTCCTTTCCCGACTCAGCGACGAAGAGCTCGTGGACGTGGCGCGCAAGCT
CCGATTGGTGGGCCGGGCCGAGGGAGGGAAGGAGGAAGGGATGGAGGGCG
GCCGGGCTTTCTGGACGGAGGTCCTGGTCGACTGGCACGCGAAGCGTCAA
AACATGATCCAGGAGATCAACGAACGACCCCTCTACGCAGATGAGCAGGT
TTTGTGGGATCCCAACGTGGTCCCGACGGAGGGCGGGACGGAGGACGGGG
CCGTGGTCGTGGTGGAAGGGCCTCTGTTGGCTTTGCCCAAGCTGAACCTG
CAGTTCCTCACGTTCGTGGACTACCTCCTCAGGAGCTACACGCTCTTTCG
GGTCGAGAGCGCCTACGAGATTCGCGCCGACTTGATGACAACTCTCCGGT
ATCTGCAGCCAGTGAGGCAGGAAGGGCCGGAGGGAGGGGTTGCTTTTCGG
GGTTGGGCGCGCATGGGGGTTCCCCTGAGGAAAGGAGGCAAGGATGGAGG
ACGAGGTGTAGTGATCACGGAGGTTTTGAAACCCAATCTAGGAGAAAGGG
TCCCGGCTGGCGTCAAGGCGGAGATAACGGTAGATCTGAGGGAGGGAGGG
AGGGAGGGAGGGCGGGAGGAATGGGACCTGTTGCGGGAGCACGACGTAGT
GTTTCTCGTTCGCATCGAGAATCCGCAAGGAGGAGGTGCAAGCGGGGCAG
GAAGGGGTGGAGGGCGACAGGGAGGGCGAGGGAACGAGGAGGAGGAAGCA
AGGGTGTTTTGTGAGGAGTTTGGAGTCAAGTATGTGCGCGGGGCGGAGAT
TTGGGAAGTGAGAGATGGCGCCGGGAACCTGATGAATGACCCCTCTGGGC
GGCCAGGGCGGGAGGCAGGAAGGGGGGGAGGACCGGTGGGATCCTTGCGG
ACGTACAAAGTCTTGTTGGACCCGGCCCAGTACCATGCTGATGCAACGAG
GGAGGGAGGGAAGGGGGGCGGGGCAGCGACAGCGGCGGAAGTGTACGAAG
GGATGAACGTCTTAATCCGGCGTAGCGCCAAGGAGAACAATTTCAAGGCC
ATTCTGGCAACCATTCGAGGGTTGATGACCACCGCCTACGTGGGAAATGC
CGTCCCGGCCTGGCTCCATGACGTCTTTCTCGGCTACGGGGATCCCGCCC
AGGCCCACTACAAGAACCTGGCTCTGGAGGAGCAGCTCCTGCGGCGCGTG
GATTTTGGGGACACGTTCTTGGACTGGCGGCACCTGCAAGAGGCCTTTCC
CCACCACAGAGTTTGTCTACAGAGCGAAGCTGGGAAGGAGGGCGGGAGGA
AGGTCGTAGGAAGCGAGGAGCTGGAAGCCTCCCCTTATCCCGCCCTGACT
CTGGATTTCAACGCGGAGGACACGGAAATCGTAGCTCGCCCCTACCAGGC
TCCGAACCCTGGACCCTACCCTCAAGACCACCCCGCCAAGAATAGCGTGC
GCTTCACGCCTGTGCAAGTGGAGGCGATTCGTAGCGGGATGAATCCTGGT
TTGACGATGGTGGTAGGCCCGCCGGGGACGGGCAAGACGGACGTGGCCGT
GCAGATCATCCTAAACCTGTACCGGTTGTTCCCGACCCAGCGCTTCCTTG
TAGTGACCCATTCCAACGCCGCCTTGAACGACATTTTCGAAAAATTGAGG
GGACGGGCGATCGATCCTCGGCACATGCTTCGGTTGGGTGCGGGTGAGAA
GGAGTTGAACGTGGAGGGAAGGGGCCAGGAGGGAGGCTACGATTTCACCA
AATGGGGTCGCGTCAACTACACACTGGCCAGGCGCTTGGAGCTTTTGGGG
GAGGTGACGAGGCTGGCAAGAAGCCTAGGCTTGCAGGAAGGGGAGGGGGG
AAGCGGAGGCGGGACGGAGGGTAATTTCACCTGTGAGACGGCGGAATACT
TTCGCCTATACCAGGTGCAATCCAGGATCGAGGCCTTCGAGGCGGCTATC
AAGGAGGGAGGCAAGGACGGGGGAGTGGTCGCGGCGGCTTTCCCTTTCAC
CGCGTTTTTCTCCACGGCGCCACAACCGTTGTTCCGGTCCACGACGGACT
CTTGGGCCGACGATTTGGAAGTCGCTCGTGGGTGCTTTCGGCACTTGGAC
CGGCTTTTCGAGGAGCTTGCCGACTATCGGGCCTTCGAACTCCTGCGGCA
CCATGGGATGCGGGGGGACTACCTGCTGACCAAGCAAGCGCGGATCGTCG
CCATGACGTGCACGCACGCGGCCCTGACCCGAGGGCGTTTGGTGGAGTTG
GGTTTCAAATTCGACGGATTGGTGATGGAGGAGGCGGCGCAGATCTTGGA
GGTGGAAACCTTCATTCCCATGCTCCTGCAAGAGGTCGACCCGATCGAGG
GCTGTCGGCTCAAGCGCGTCGTCTTGATCGGCGACCACCACCAGCTTCCC
CCCATCGTTCAAAACCAAGCCTTGCAAAAGTATGCCCGTCTGGACCAATC
TCTCTTTGCGCGCTTCGTCCGGCTTGGCGTCAAGACCGTCCAACTCGACA
GACAGGGACGGGCCCGGCCCTCCTTGGCCGCCCTCTACGCCTGGCGGTAT
AAGGACTTGGGGAACCTGCCGAACGTGACGTCCCTCCCTCGCTACTTGTT
GGCGAACCCGGGCATGGCCCACTCTTTCCAGTGCATTAATGTGGAGGACT
TCCGGGGCCAAGGCGAGAGCCAGCCCTCTCCCTACTTCTACCAGAACCTA
GGGGAGGCGGAGTACTGCGTGGCCCTCTATATGTATCTACGTCTGTGCGG
GTATCCCGCGGAGAAGATCTCCATCTTGACCACTTACAACGGACAGAAGA
GTCTTCTGGAGGATGTGCTTCGGCAAAGATGTGGGAGCCAGGGCGGCTTC
TACTTCGGACGCCCGGCGGCCGTTGAAACGGTCGACCGTTACCAGGGGCA
ACAAAACGACTACGTGATCCTCTCCTTGGTCCGCACAAGGAACATCGGTC
ACATCCGGGACGTGCGACGACTGGTGGTGGCCATGTCCCGCGCCCGTTTG
GGCCTGTACGCCTTCTGCCGGCAGAGCCTCTTTGAGTCCTGCCACGAGCT
AACTCCGGCTTTCAGTCGGCTCCTGTCCCGCCCTTCTGTGCTCGAGCTGG
CCATGGGGGAACGATTCGATGGATGGGAGGAAGGGAAGGAAGGAGTAAGG
AAAGAAGGCGAGTCACCTGCTCCCGGGCAGGGCTATCGCGTGCAAGGCCC
CGAGCAATTGGGCTCCCTTTGCCACCAGTTGCTTGCGGACTACCAACATC
AGCAGCAGCTGCAATGGCAATACCACCAGCAACAACTGCTAAATCAGCAA
CAGAAGGAGGAAGCAAGACAGCAGGAGCAGGAACGAGTCGCGCCTGCTTT
GGCGCCTCCCCAACCACTTGAGGAGGGCGAGGAGCGTGAGTAA

protein sequence of rna9681

>rna9681-protein ID=rna9681-protein|Name=rna9681|organism=Nannochloropsis gaditana|type=polypeptide|length=261bp
MGDTRGFMFCLSIQRGLLAAFSLSGRMAIYEGEQPNAYMQSTGRSGSNPW
QLFLYFIFPIPLVFLVLISLPFPARYRAKIRVGILNALNRISFLRFDYGG
ASISLIAIIILIALLGLIFSANDSLNARRAENQAHFFAEKKELRCKRWRA
ERNFWLSVLGCVLWVVLLRIQTLLMDVGPLEERLKRAEEERDAAAKESKE
KEGVLRRLREAVEQGVREGKEKEGVILTLREKMGEVEGLKKRVVILEEEK
EALRKGSKKTS

mRNA from alignment at KK037255.1:143332..144438+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9681 ID=rna9681|Name=rna9681|organism=Nannochloropsis gaditana|type=mRNA|length=1107bp|location=Sequence derived from alignment at KK037255.1:143332..144438+ (Nannochloropsis gaditana)
ATGGGCGATACAAGAGGTTTTATGTTCTGTCTGtgattcccttccttcgg
cAAGAATATGTGCCATGATTATGGCATTTTTTGGCGTAAAGTTGCCGCTT
CTACACCTTGTTAGCTTCCTAAAGCTCGGCTTGTCCATGTTTGACCAGTT
GCACACATTTCtcccattttttcttcctttcgcAACATAAGTTCCATCCA
ACGCGGCCTTTTGGCAGCATTTTCACTCTCAGGACGCATGGCCATCTACG
AGGGGGAGCAACCGAATGCATACATGCAATCCACGGGGCGTTCTGGCTCT
AATCCCTGGCAGCTTTTCCTCTACTTTATTTTTCCAATTCCTCTGGTCTT
CCTGGTGCTGATCTCGCTACCTTTCCCCGCCCGGTATCGAGCCAAGATCC
GTGTGGGCATCCTGGTACGTGCTTGCTCGTCTAGAGGTGGTGCGGAAATG
GTGCTTTGAAAGCACAGTAGCGCCTGTGCTGAATGGGACAGCTCACCTTT
TTCGTATCGGAACATGCGAAGCACTTGTCAACACTGTCATGCAGAACGCT
CTTCATCTCGCTTGCCTTTCACCCAGAATGCCCTCAACAGGATCTCTTTT
TTACGCTTTGACTACGGGGGCGCAAGCATTTCCTTGATCGCCATCATCAT
TTTGATTGCACTGCTGGGCCTGATCTTCTCCGCAAACGACTCCTTGAACg
cgcggagggcggagaaTCAAGCGCATTTCTTCGCCGAGAAAAAGGAACTT
CGGTGCAAGCGCTGGCGGGCAGAGCGGAATTTTTGGCTGTCGGTGCTCGG
CTGTGTGCTTTGGGTGGTGCTTTTGCGGATTCAGACGTTGTTGATGGACG
TGGGTCCTCTGGAAGAGCGGTtgaaaagggcggaggaggagagggacgcg
gcggcgaaggagagcaaggagaaggagggggtccTGAGGCGTTTgcggga
ggcagtggagcaGGGCGtgcgagaggggaaggagaaggaaggggtgatTC
TGACTCTACGGGAGAAGatgggagaggtggagggtctGAAGAAACGTGTG
GTgatcttggaggaggagaaggaggcgctgaGAAAGGGATCGAAGAAGAc
gagctga

Coding sequence (CDS) from alignment at KK037255.1:143332..144438+

>rna9681 ID=rna9681|Name=rna9681|organism=Nannochloropsis gaditana|type=CDS|length=2358bp|location=Sequence derived from alignment at KK037255.1:143332..144438+ (Nannochloropsis gaditana)
ATGGGCGATACAAGAGGTTTTATGTTCTGTCTTTCCATCCAACGCGGCCT
TTTGGCAGCATTTTCACTCTCAGGACGCATGGCCATCTACGAGGGGGAGC
AACCGAATGCATACATGCAATCCACGGGGCGTTCTGGCTCTAATCCCTGG
CAGCTTTTCCTCTACTTTATTTTTCCAATTCCTCTGGTCTTCCTGGTGCT
GATCTCGCTACCTTTCCCCGCCCGGTATCGAGCCAAGATCCGTGTGGGCA
TCCTGAATGCCCTCAACAGGATCTCTTTTTTACGCTTTGACTACGGGGGC
GCAAGCATTTCCTTGATCGCCATCATCATTTTGATTGCACTGCTGGGCCT
GATCTTCTCCGCAAACGACTCCTTGAACgcgcggagggcggagaaTCAAG
CGCATTTCTTCGCCGAGAAAAAGGAACTTCGGTGCAAGCGCTGGCGGGCA
GAGCGGAATTTTTGGCTGTCGGTGCTCGGCTGTGTGCTTTGGGTGGTGCT
TTTGCGGATTCAGACGTTGTTGATGGACGTGGGTCCTCTGGAAGAGCGGT
tgaaaagggcggaggaggagagggacgcggcggcgaaggagagcaaggag
aaggagggggtccTGAGGCGTTTgcgggaggcagtggagcaGGGCGtgcg
agaggggaaggagaaggaaggggtgatTCTGACTCTACGGGAGAAGatgg
gagaggtggagggtctGAAGAAACGTGTGGTgatcttggaggaggagaag
gaggcgctgaGAAAGGGATCGAAGAAGAcgagctgaATGGGCGATACAAG
AGGTTTTATGTTCTGTCTTTCCATCCAACGCGGCCTTTTGGCAGCATTTT
CACTCTCAGGACGCATGGCCATCTACGAGGGGGAGCAACCGAATGCATAC
ATGCAATCCACGGGGCGTTCTGGCTCTAATCCCTGGCAGCTTTTCCTCTA
CTTTATTTTTCCAATTCCTCTGGTCTTCCTGGTGCTGATCTCGCTACCTT
TCCCCGCCCGGTATCGAGCCAAGATCCGTGTGGGCATCCTGAATGCCCTC
AACAGGATCTCTTTTTTACGCTTTGACTACGGGGGCGCAAGCATTTCCTT
GATCGCCATCATCATTTTGATTGCACTGCTGGGCCTGATCTTCTCCGCAA
ACGACTCCTTGAACgcgcggagggcggagaaTCAAGCGCATTTCTTCGCC
GAGAAAAAGGAACTTCGGTGCAAGCGCTGGCGGGCAGAGCGGAATTTTTG
GCTGTCGGTGCTCGGCTGTGTGCTTTGGGTGGTGCTTTTGCGGATTCAGA
CGTTGTTGATGGACGTGGGTCCTCTGGAAGAGCGGTtgaaaagggcggag
gaggagagggacgcggcggcgaaggagagcaaggagaaggagggggtccT
GAGGCGTTTgcgggaggcagtggagcaGGGCGtgcgagaggggaaggaga
aggaaggggtgatTCTGACTCTACGGGAGAAGatgggagaggtggagggt
ctGAAGAAACGTGTGGTgatcttggaggaggagaaggaggcgctgaGAAA
GGGATCGAAGAAGAcgagctgaATGGGCGATACAAGAGGTTTTATGTTCT
GTCTTTCCATCCAACGCGGCCTTTTGGCAGCATTTTCACTCTCAGGACGC
ATGGCCATCTACGAGGGGGAGCAACCGAATGCATACATGCAATCCACGGG
GCGTTCTGGCTCTAATCCCTGGCAGCTTTTCCTCTACTTTATTTTTCCAA
TTCCTCTGGTCTTCCTGGTGCTGATCTCGCTACCTTTCCCCGCCCGGTAT
CGAGCCAAGATCCGTGTGGGCATCCTGAATGCCCTCAACAGGATCTCTTT
TTTACGCTTTGACTACGGGGGCGCAAGCATTTCCTTGATCGCCATCATCA
TTTTGATTGCACTGCTGGGCCTGATCTTCTCCGCAAACGACTCCTTGAAC
gcgcggagggcggagaaTCAAGCGCATTTCTTCGCCGAGAAAAAGGAACT
TCGGTGCAAGCGCTGGCGGGCAGAGCGGAATTTTTGGCTGTCGGTGCTCG
GCTGTGTGCTTTGGGTGGTGCTTTTGCGGATTCAGACGTTGTTGATGGAC
GTGGGTCCTCTGGAAGAGCGGTtgaaaagggcggaggaggagagggacgc
ggcggcgaaggagagcaaggagaaggagggggtccTGAGGCGTTTgcggg
aggcagtggagcaGGGCGtgcgagaggggaaggagaaggaaggggtgatT
CTGACTCTACGGGAGAAGatgggagaggtggagggtctGAAGAAACGTGT
GGTgatcttggaggaggagaaggaggcgctgaGAAAGGGATCGAAGAAGA
cgagctga

Synonyms

Publications