EWM21023.1, cds9650 (CDS) Nannochloropsis gaditana

Overview
NameEWM21023.1
Unique Namecds9650
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:143332..143363 +
Alignment locationKK037255.1:143523..143745 +
Alignment locationKK037255.1:143908..144438 +

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Properties
Property NameValue
Protein idEWM21023.1
Productexpressed unknown protein
Orig transcript idgnl|cribi|Naga_100271g4.8581.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:143332..143363 +
KK037255.1supercontigKK037255.1:143523..143745 +
KK037255.1supercontigKK037255.1:143908..144438 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM21023.1 vs. NCBI_GenBank
Match: gi|585101026|gb|EWM21023.1| (expressed unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 520.005 bits (1338), Expect = 0.000e+0
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0
Query:    1 MGDTRGFMFCLSIQRGLLAAFSLSGRMAIYEGEQPNAYMQSTGRSGSNPWQLFLYFIFPIPLVFLVLISLPFPARYRAKIRVGILNALNRISFLRFDYGGASISLIAIIILIALLGLIFSANDSLNARRAENQAHFFAEKKELRCKRWRAERNFWLSVLGCVLWVVLLRIQTLLMDVGPLEERLKRAEEERDAAAKESKEKEGVLRRLREAVEQGVREGKEKEGVILTLREKMGEVEGLKKRVVILEEEKEALRKGSKKTS 261
            MGDTRGFMFCLSIQRGLLAAFSLSGRMAIYEGEQPNAYMQSTGRSGSNPWQLFLYFIFPIPLVFLVLISLPFPARYRAKIRVGILNALNRISFLRFDYGGASISLIAIIILIALLGLIFSANDSLNARRAENQAHFFAEKKELRCKRWRAERNFWLSVLGCVLWVVLLRIQTLLMDVGPLEERLKRAEEERDAAAKESKEKEGVLRRLREAVEQGVREGKEKEGVILTLREKMGEVEGLKKRVVILEEEKEALRKGSKKTS
Sbjct:    1 MGDTRGFMFCLSIQRGLLAAFSLSGRMAIYEGEQPNAYMQSTGRSGSNPWQLFLYFIFPIPLVFLVLISLPFPARYRAKIRVGILNALNRISFLRFDYGGASISLIAIIILIALLGLIFSANDSLNARRAENQAHFFAEKKELRCKRWRAERNFWLSVLGCVLWVVLLRIQTLLMDVGPLEERLKRAEEERDAAAKESKEKEGVLRRLREAVEQGVREGKEKEGVILTLREKMGEVEGLKKRVVILEEEKEALRKGSKKTS 261          
BLAST of EWM21023.1 vs. NCBI_GenBank
Match: gi|299470147|emb|CBN78175.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 65.4698 bits (158), Expect = 8.106e-10
Identity = 46/141 (32.62%), Postives = 71/141 (50.35%), Query Frame = 0
Query:   45 SGSNPWQLFLYFIFPIPLVFLVLISLPFPARYRAKIRVGILNALNRISFLRFDYGGASISLIAIIILIALLGLIFSANDSLNARRAENQAHFFAEKKELRCKRWRAERNFWLSVLGCVLWVVLLRIQTLLMDVGPLEERLK 185
            + +N W L +  IFPIP  FL+LI LP   + R      I+    R+    F +   SI LI +I+  +         ++   R  E  A  F EK  LR +RWRAERNF++S +     V+  R++ +L +V  L E+++
Sbjct:    2 ASNNLWPLLIKIIFPIPASFLLLICLPLSTQSR------IMRWTRRLYDKIFSFQVMSIPLIYLIMAASCALFAAMCLETYGLRVREVNATHFDEKMNLRGRRWRAERNFYISFMFLSCSVLANRVRLMLKEVDSLNEQIR 136          
BLAST of EWM21023.1 vs. NCBI_GenBank
Match: gi|698779309|ref|XP_009822698.1| (hypothetical protein H257_01274 [Aphanomyces astaci] >gi|574122359|gb|ETV87835.1| hypothetical protein H257_01274 [Aphanomyces astaci])

HSP 1 Score: 57.7658 bits (138), Expect = 4.723e-7
Identity = 36/125 (28.80%), Postives = 66/125 (52.80%), Query Frame = 0
Query:   50 WQLFLYFIFPIPLVFLVLISLPFPARYRAKIRVGILNALNRISFLRFDYGGASI-SLIAIIILIALLGLIFSANDSLNARRAENQAHFFAEKKELRCKRWRAERNFWLSVLGCVLWVVLLRIQTL 173
            W  + Y + P  ++ LVL+++PFP      I  G++  +N   FL F+  G  + SL+     +AL G  +      N + +  + H+ A+ +  +  RWR+ERN+W+S L   ++ +LL  Q++
Sbjct:    4 WAAWAYVLLPPAVILLVLLTIPFPK----AIAKGVVR-MNDF-FLNFEVAGVPVVSLVTFFAFVALAGQSYDLQKRYNYQISGMEKHYEADLQH-KATRWRSERNWWISALTFTIYWMLLAFQSM 121          
The following BLAST results are available for this feature:
BLAST of EWM21023.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585101026|gb|EWM21023.1|0.000e+0100.00expressed unknown protein [Nannochloropsis gaditan... [more]
gi|299470147|emb|CBN78175.1|8.106e-1032.62expressed unknown protein [Ectocarpus siliculosus][more]
gi|698779309|ref|XP_009822698.1|4.723e-728.80hypothetical protein H257_01274 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9681rna9681Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications