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Properties
| Property Name | Value |
|---|
| Product | voltage-dependent l-type ca channel alpha 1 subunit |
| Orig transcript id | gnl|cribi|Naga_100478g1.9245.mrna |
| Orig protein id | gnl|cribi|Naga_100478g1.9245 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037255.1 | supercontig | KK037255.1:121598..123553 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9676 ID=rna9676|Name=rna9676|organism=Nannochloropsis gaditana|type=mRNA|length=1703bp
TACTTTCCTCGCCCCCCTCAGGCGCGCGCGGGTGGGAGGCAACTTTCTAA
ACCCTTTACTCCTTCACTCAGGCACCTCGTCTTCATCAGGTCGTGTCGAG
AGCTTTGGGGGAACCTTCGCACGCGACGGTGATTTTCCGGGCCTGGAAAA
CCGACATGCAGTATGCCACTGCTCAGTCTTGTGATTTTGATAGAGACTGC
TCGCGTTCGTTACGTGCTATACGTCTGTCTCTTTGCGGCTTCCCTCTTCA
CGGGAGTGGGTGTGGGCACCCGACAGGGGTGGGCAGGTGGTCAGGTGCGA
TCAGAGAGCGCGTACTCTACACCTCCTGAGCCTGCCCCATGCCCTTCTGA
ACTTAATATCAATAGCAGCATGAGCTGTTCGTCGTCTGAAAAATATACGG
CAACTTTGCAGACTGATTTCACGTATGGGTTGGTGCGAGATTTGGTCTAC
AGAAGCATCTCGACGCAACAAGTGGCAACCAACCTGTACATGGAGAGCAC
CCCGGCAAACCCTACGACATCCCCCGTCCTGGTCCGCACAGACTTCGTCG
ATCAAACTCCTGTGGAACAGGTAGTGATCCAGAAGTCTTACGCCCTGTGG
GCACAAGGAAACCGGGCGGACGGCCGGGCAGTTTACGCCGCTCAAAGCTT
CCTCGTCCTCGCCCTCCTTTTCCTGCTCTTTGCCTGGGTTTCCATCCTCG
CAAGCCTCTCCTTTTTACCCGTTTCCCCCTCCCAAAATTCGTCCTCATCT
CCATCTCCGGCAACGCCTGGGACCCTCTCACGCACATTAAAGCTGGGGCG
GGGGGCGGTTGTCGCCGCGGCGCTTTGTATCCTCCTGACCGTAATGACGT
GGGCCTGGGGGGTGTCTCCCCAGGCCCTGTCGCACATGTGCGTGCAAGCA
GGAGAGTCCCACCTCCTTCCTGTCCTGCGCTCCCAAAGCCGCCATTCCTC
CCCGGGCGTGCCCTCCTCGCCGCTTTCCCCCCCGCGGGTGACTGCCCCCT
TCCAGGGCCTTCCTGCGTCATCCTTTACGGCTCTTGCTTCTCAGCCTCCC
ACCCCCTGGCCTCTGACCAAGCCCTCCACCACGCCCGTCACGTGTTGGCA
GCTTGCAAACGACCCCTGTTCCGCGTTCGATTCCCTGCACCCCCCGCCCT
CCTCGTGCATCACGCGGCCACCCTCCGTCTCCCTCCACGGAGGCCTCTGG
AGCCTGATGCTCTTCGTGGCGCTGCTCCTCGTGCTGACGGGGCGAGTGTG
GAAAGAGCTGGAGGGCATGGTGGGACGGATAGTGGAATGGGAGGGGACAG
GAAGAGGGGGAAGGGAGGGGGAGGGAGAAAGCTTACAGGCCCCTCTCCTC
TCACCCGGGGTCAAGGAAGAGGAAGCGATCGCGAGCGTGGCGTAGTGCGG
GGGGGAATGGGGACTTCACTGCTTCGCGCAAAAAATGTGAGAAGGCGAAG
GGGGAGGGGGCGGTAGCACGTGTTCGGTAATGCAATGGGAGGCCGCCACA
ACTGGAGAAAGCCACGTGCTGTGCCATGGGTGTGAAAGAAGCATGTACAG
AGTGTCTGATTCCCCAACGACCGTGCAACGCCTCTGAGAATGTTTAATTC
TTCATGCGCGCGAGCCCCCTCCCATCCCTGTGCCCTCCTCCGGCCATAGC
CTCGTGACTGTATCTACACGTGCTCGCGTCTCCTCGCCCATGGTAGACTT
AAG back to topprotein sequence of rna9676 >rna9676-protein ID=rna9676-protein|Name=rna9676|organism=Nannochloropsis gaditana|type=polypeptide|length=580bp
MSSPPPTPHKSTRQSFGFDDEDKIEKRRTEPCQISSGGDSPSNPPEARGR
RGTGTSSNHGAADLAQTRDAETRATSLSLASPSPATSVPLPADPLSSSAP
SMPAQGPGAPLPLEFGALTLVPSPPLRGPSPSPTPSSERMEHQGRSGGPT
AQLASLVLPADHDSLIPLARGFLTPPPTPHGTTRSPASSMDPALAPRSSQ
YSFPRPSSASSCARASAGPGARPPALPPSSLPRPRRLPRNLSHAFRKSYP
AFIEFHIPITHPLRLPAVLLFDSVAWDAGILLLVLLNALTLTFWRPTNAF
SSSSQAILLFEIIFQLCFTNEAVVKFIALGLFRHPRSYFRDPWNVFDFFV
LIAAWLALYASFSSSVAPPPDTSPDSPNAAPSLHGPLMVFGVLRVLRPFR
ILNLLPELKRLTGAVYLALPSLTTLMSLTLLVFVTLGVVGLNLLRGTFHQ
QCYRPRGNYFEFTEASTDGLALCSLKGETGGGRECPANFVCRDAPLGPNL
GFTSFDNVWVAFLTIFQCMTQEGWVQVLYWARQSGGRYTTAYFLLIFFLS
FFLFNLIIVFVIVNYSLSQERGAIDRLRER back to topmRNA from alignment at KK037255.1:121598..123553+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9676 ID=rna9676|Name=rna9676|organism=Nannochloropsis gaditana|type=mRNA|length=1956bp|location=Sequence derived from alignment at KK037255.1:121598..123553+ (Nannochloropsis gaditana)
GCTTTTCTGAGTCCATCGCGAACTCTAGCAGTTGCGTtgtctcctttctt
caaAGAATTATTGCCTTTCCCAACAccgccttcatcttcatcgcTACGCA
ATCAGGCAGCCCAACACAATTATGCGCTGCTTTTTATTGAAGTTGCAGAG
CTAAGCAGACGGATACAGCGGTAGTCGAGTCGATTACAGGAGGCAGCACG
AACAGAGGAGCGACTCATGTCGTCgcccccgccgacgccgcATAAAAGTA
CACGCCAGTCCTTTGGCTTTGACGATGAAGACAAAATTGAAAAGAGGCGG
ACAGAACCATGCCAAATCAGCAGTGGTGGAGATTCACCTTCCAATCCGCC
TGAGGCTAGAGGGCGTCGCGGGACAGGCACGAGCAGCAACCATGGCGCGG
CCGACCTCGCCCAGACCCGAGATGCTGAGACGCGTGCcacctcgctttcc
ctcgcttctccttcccctgcaaCGTCCGTCCCACTCCCTGCCGatccctt
gtcctcgtcggCGCCGTCGATGCCCGCACAGGGGCCAggcgcccctctcc
ccctcgagTTTGGCGCCTTGACACTGGTCCCGTCACCTCCCTTGCGTGgc
ccttcgccctcgcccacgccctcctcagAGCGCATGGAGCATCAAGGCAG
AAGCGGGGGCCCGACTGCCCAGCTTGCttctctcgtcctccccgccgacc
acgactccctcatccccctggCTCGAGGCTTCCTcacgccgccgccgacg
ccacACGGGACCACCCGGAGCCCCGCGAGCAGCATGGACCCCGCACTGGC
ACCAAGAAGCTCCCAGtattcctttcctcgcccctcttcgGCGTCTTCCT
GCGCTCGAGCTTCGGCGGGTCCAGGAGcccgccccccggccctccctccc
tccagccttccccgcccccgtcgtcTCCCCCGCAACCTCTCGCACGCGTT
TCGGAAAAGCTACCCTGCCTTCATTGAGTTCCACATTCCTATCacgcacc
ccctccgcctccccgccgtcctcctcttcgactCGGTGGCCTGGGACgct
ggcatcctcctcctcgtcctcctgaaCGCCCTCACCCTCACCTTCTGGCG
CCCCACAaacgccttctcctcctcctcccaggccatcctcctcttcgaga
TCATCTTCCAGCTCTGCTTCACGAACGAAGCCGTGGTCAAATTCATCGCC
CTCGGGCTTTTCCGGCATCCCCGTTCGTATTTCCGAGACCCCTGGAACGT
CTTCGacttcttcgtcctcatcgCCGCCTGGCTCGCCCTTTATGCgagtt
tttcctcctccgttgccccccccccggacaCCTCCCCAGACTCCCCAAAT
gccgcgccctccttgcaCGGACCCTTGATGGTCTTCGGTGTTTTGCGGGT
GCTACGACCGTTTCGGATTTTGAATCTCCTCCCCGAGCTGAAACGGCTGA
CCGGGGCCGTGTACcttgccctgccctccctgaccACCCTCAtgtccctc
accctcctcgtcttcgtcacTCTGGGCGTGGTGGGTTTGAATTTGCTCCG
AGGGACCTTCCACCAACAGTGCTACCGGCCCCGGGGGAATTATTTCGAAT
TCACCGAGGCCAGCACGGACGGGCTGGCCCTCTGCAGTttgaagggggag
acgggagggggccgggagtGTCCCGCCAATTTCGTCTGCAGGGACGCGCC
CTTGGGCCCCAATTTGGGGTTCACGAGTTTCGATAACGTGTGGGTGGCCT
TTTTGACGATTTTTCAGTGCATGACGCAAGAGGGATGGGTGCAAGTCTTA
TACTGGGCACGGCAGTCGGGGGGACGCTACACGACTGCatatttcctcct
cattttcttcctttccttttttctcttcaaTTTGATCATCGTCTTCGTGA
TTGTCAACTACTCGTTGAGTCAGGAAAGGGGGGCGATCGACCGGCTGAGG
GAAAGG back to topCoding sequence (CDS) from alignment at KK037255.1:121598..123553+ >rna9676 ID=rna9676|Name=rna9676|organism=Nannochloropsis gaditana|type=CDS|length=1740bp|location=Sequence derived from alignment at KK037255.1:121598..123553+ (Nannochloropsis gaditana)
ATGTCGTCgcccccgccgacgccgcATAAAAGTACACGCCAGTCCTTTGG
CTTTGACGATGAAGACAAAATTGAAAAGAGGCGGACAGAACCATGCCAAA
TCAGCAGTGGTGGAGATTCACCTTCCAATCCGCCTGAGGCTAGAGGGCGT
CGCGGGACAGGCACGAGCAGCAACCATGGCGCGGCCGACCTCGCCCAGAC
CCGAGATGCTGAGACGCGTGCcacctcgctttccctcgcttctccttccc
ctgcaaCGTCCGTCCCACTCCCTGCCGatcccttgtcctcgtcggCGCCG
TCGATGCCCGCACAGGGGCCAggcgcccctctccccctcgagTTTGGCGC
CTTGACACTGGTCCCGTCACCTCCCTTGCGTGgcccttcgccctcgccca
cgccctcctcagAGCGCATGGAGCATCAAGGCAGAAGCGGGGGCCCGACT
GCCCAGCTTGCttctctcgtcctccccgccgaccacgactccctcatccc
cctggCTCGAGGCTTCCTcacgccgccgccgacgccacACGGGACCACCC
GGAGCCCCGCGAGCAGCATGGACCCCGCACTGGCACCAAGAAGCTCCCAG
tattcctttcctcgcccctcttcgGCGTCTTCCTGCGCTCGAGCTTCGGC
GGGTCCAGGAGcccgccccccggccctccctccctccagccttccccgcc
cccgtcgtcTCCCCCGCAACCTCTCGCACGCGTTTCGGAAAAGCTACCCT
GCCTTCATTGAGTTCCACATTCCTATCacgcaccccctccgcctccccgc
cgtcctcctcttcgactCGGTGGCCTGGGACgctggcatcctcctcctcg
tcctcctgaaCGCCCTCACCCTCACCTTCTGGCGCCCCACAaacgccttc
tcctcctcctcccaggccatcctcctcttcgagaTCATCTTCCAGCTCTG
CTTCACGAACGAAGCCGTGGTCAAATTCATCGCCCTCGGGCTTTTCCGGC
ATCCCCGTTCGTATTTCCGAGACCCCTGGAACGTCTTCGacttcttcgtc
ctcatcgCCGCCTGGCTCGCCCTTTATGCgagtttttcctcctccgttgc
cccccccccggacaCCTCCCCAGACTCCCCAAATgccgcgccctccttgc
aCGGACCCTTGATGGTCTTCGGTGTTTTGCGGGTGCTACGACCGTTTCGG
ATTTTGAATCTCCTCCCCGAGCTGAAACGGCTGACCGGGGCCGTGTACct
tgccctgccctccctgaccACCCTCAtgtccctcaccctcctcgtcttcg
tcacTCTGGGCGTGGTGGGTTTGAATTTGCTCCGAGGGACCTTCCACCAA
CAGTGCTACCGGCCCCGGGGGAATTATTTCGAATTCACCGAGGCCAGCAC
GGACGGGCTGGCCCTCTGCAGTttgaagggggagacgggagggggccggg
agtGTCCCGCCAATTTCGTCTGCAGGGACGCGCCCTTGGGCCCCAATTTG
GGGTTCACGAGTTTCGATAACGTGTGGGTGGCCTTTTTGACGATTTTTCA
GTGCATGACGCAAGAGGGATGGGTGCAAGTCTTATACTGGGCACGGCAGT
CGGGGGGACGCTACACGACTGCatatttcctcctcattttcttcctttcc
ttttttctcttcaaTTTGATCATCGTCTTCGTGATTGTCAACTACTCGTT
GAGTCAGGAAAGGGGGGCGATCGACCGGCTGAGGGAAAGG back to top
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