EWM21028.1, cds9645 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM21028.1
Unique Name	cds9645
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037255.1:121814..123553 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM21028.1
Product	voltage-dependent l-type ca channel alpha 1 subunit
Partial	true
Orig transcript id	gnl\|cribi\|Naga_100478g1.9245.mrna
Gbkey	CDS
End range	.
End range	123553

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037255.1	supercontig	KK037255.1:121814..123553 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005886	plasma membrane
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005215	transporter activity
GO:0005216	ion channel activity

Vocabulary: **Biological Process**
Term	Definition
GO:0009987	cellular process
GO:0006810	transport
GO:0006811	ion transport
GO:0055085	transmembrane transport

Vocabulary: **INTERPRO**
Term	Definition
IPR005821	Ion_trans_dom
IPR027359	Channel_four-helix_dom

Homology

[Close]

BLAST of EWM21028.1 vs. NCBI_GenBank
Match: gi|585101033|gb|EWM21028.1| (voltage-dependent l-type ca channel alpha 1 subunit, partial [Nannochloropsis gaditana])

HSP 1 Score: 1155.2 bits (2987), Expect = 0.000e+0
Identity = 580/580 (100.00%), Postives = 580/580 (100.00%), Query Frame = 0

Query:    1 MSSPPPTPHKSTRQSFGFDDEDKIEKRRTEPCQISSGGDSPSNPPEARGRRGTGTSSNHGAADLAQTRDAETRATSLSLASPSPATSVPLPADPLSSSAPSMPAQGPGAPLPLEFGALTLVPSPPLRGPSPSPTPSSERMEHQGRSGGPTAQLASLVLPADHDSLIPLARGFLTPPPTPHGTTRSPASSMDPALAPRSSQYSFPRPSSASSCARASAGPGARPPALPPSSLPRPRRLPRNLSHAFRKSYPAFIEFHIPITHPLRLPAVLLFDSVAWDAGILLLVLLNALTLTFWRPTNAFSSSSQAILLFEIIFQLCFTNEAVVKFIALGLFRHPRSYFRDPWNVFDFFVLIAAWLALYASFSSSVAPPPDTSPDSPNAAPSLHGPLMVFGVLRVLRPFRILNLLPELKRLTGAVYLALPSLTTLMSLTLLVFVTLGVVGLNLLRGTFHQQCYRPRGNYFEFTEASTDGLALCSLKGETGGGRECPANFVCRDAPLGPNLGFTSFDNVWVAFLTIFQCMTQEGWVQVLYWARQSGGRYTTAYFLLIFFLSFFLFNLIIVFVIVNYSLSQERGAIDRLRER 580
            MSSPPPTPHKSTRQSFGFDDEDKIEKRRTEPCQISSGGDSPSNPPEARGRRGTGTSSNHGAADLAQTRDAETRATSLSLASPSPATSVPLPADPLSSSAPSMPAQGPGAPLPLEFGALTLVPSPPLRGPSPSPTPSSERMEHQGRSGGPTAQLASLVLPADHDSLIPLARGFLTPPPTPHGTTRSPASSMDPALAPRSSQYSFPRPSSASSCARASAGPGARPPALPPSSLPRPRRLPRNLSHAFRKSYPAFIEFHIPITHPLRLPAVLLFDSVAWDAGILLLVLLNALTLTFWRPTNAFSSSSQAILLFEIIFQLCFTNEAVVKFIALGLFRHPRSYFRDPWNVFDFFVLIAAWLALYASFSSSVAPPPDTSPDSPNAAPSLHGPLMVFGVLRVLRPFRILNLLPELKRLTGAVYLALPSLTTLMSLTLLVFVTLGVVGLNLLRGTFHQQCYRPRGNYFEFTEASTDGLALCSLKGETGGGRECPANFVCRDAPLGPNLGFTSFDNVWVAFLTIFQCMTQEGWVQVLYWARQSGGRYTTAYFLLIFFLSFFLFNLIIVFVIVNYSLSQERGAIDRLRER
Sbjct:    1 MSSPPPTPHKSTRQSFGFDDEDKIEKRRTEPCQISSGGDSPSNPPEARGRRGTGTSSNHGAADLAQTRDAETRATSLSLASPSPATSVPLPADPLSSSAPSMPAQGPGAPLPLEFGALTLVPSPPLRGPSPSPTPSSERMEHQGRSGGPTAQLASLVLPADHDSLIPLARGFLTPPPTPHGTTRSPASSMDPALAPRSSQYSFPRPSSASSCARASAGPGARPPALPPSSLPRPRRLPRNLSHAFRKSYPAFIEFHIPITHPLRLPAVLLFDSVAWDAGILLLVLLNALTLTFWRPTNAFSSSSQAILLFEIIFQLCFTNEAVVKFIALGLFRHPRSYFRDPWNVFDFFVLIAAWLALYASFSSSVAPPPDTSPDSPNAAPSLHGPLMVFGVLRVLRPFRILNLLPELKRLTGAVYLALPSLTTLMSLTLLVFVTLGVVGLNLLRGTFHQQCYRPRGNYFEFTEASTDGLALCSLKGETGGGRECPANFVCRDAPLGPNLGFTSFDNVWVAFLTIFQCMTQEGWVQVLYWARQSGGRYTTAYFLLIFFLSFFLFNLIIVFVIVNYSLSQERGAIDRLRER 580

[Close]

BLAST of EWM21028.1 vs. NCBI_GenBank
Match: gi|1079735553|ref|XP_018536965.1| (PREDICTED: voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X3 [Lates calcarifer])

HSP 1 Score: 171.4 bits (433), Expect = 2.818e-41
Identity = 106/348 (30.46%), Postives = 172/348 (49.43%), Query Frame = 0

Query:  255 FHIPITHPLRLPAVLLFDSVAWDAGILLLVLLNALTLTFWRP--TNAFSSSSQAILLFEIIFQLCFTNEAVVKFIALGLFRHPRSYFRDPWNVFDFFVLIAAWLALYASFSSSVAPPPDTSPDSPNAAPSLHG--------PLMVFGVLRVLRPFRILNLLPELKRLTGAVYLALPSLTTLMSLTLLVFVTLGVVGLNLLRGTFHQQCYRPRGNYFEFTEASTDGLAL-----CSLKGETGGGRECPANFV-CRDAPLGPNLGFTSFDNVWVAFLTIFQCMTQEGWVQVLYWARQSGG-RYTTAYFL-LIFFLSFFLFNLIIVFVIVNYSLSQE----RGAIDRLRER 580
            F + + +P+R   + L +   +D  IL+ +  N + L  + P   +  +S++  +   E  F + FT E  +K IA GL  H  +Y R+ WN+ DF +++   + L++     +     T  D  ++ PS+HG         +      RVLRP R+++ +P L+ +  ++  A+  L  +  L L V +   ++GL L  G  H  CY           A +D +A      C++   +G GR+CP N   CR+   GPN G T+FDN   A LT+FQC+T EGW  VLYW   + G      YF+ L+ F SFF+ NL++  +   +S  +E    RG   +LRE+
Sbjct:   80 FCLNLNNPIRRACISLVEWKPFDIFILIAIFANCMALAVYVPFPEDDSNSTNHDLETVEYAFLIIFTIETFLKIIAYGLVMHQNAYVRNGWNMLDFVIVV---IGLFSVVLELLTKDEKTEGDGESSHPSMHGHGGKPGGFDVKALRAFRVLRPLRLVSGVPSLQVVLNSIIKAMVPLLHIALLVLFVIIIYAIIGLELFIGKMHATCYM----------AGSDAIAEEEPAPCAI---SGHGRQCPMNGTECREGWQGPNGGITNFDNFLFAMLTVFQCITMEGWTDVLYWMNDAMGFELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAKARGDFQKLREK 411

HSP 2 Score: 81.6481 bits (200), Expect = 2.495e-12
Identity = 69/276 (25.00%), Postives = 124/276 (44.93%), Query Frame = 0

Query:  260 THPLRLPAVLLFDSVAWDAGILLLVLLNALTLTFWRPTNAFSSSSQAILLFEIIFQLCFTNEAVVKFIALGLFRHPRSYFRDPWNVFDFFVLIAAWLALYASFSSSVAPPPDTSPDSPNAAPSLHGPLMVFGVLRVLRPFRILNLLPELKRLTGAVYLALPSLTTLMSLTLLVFVTLGVVGLNLLRGTFHQQCYRPRGNYFEFTEASTDGLALCSLKGETGGGRECPANFVCRDAPLGPNLGFTSFDNVWVAFLTIFQCMTQEGWVQVLYWARQSG 535
            T+P+R+    L +   +   IL+ ++L++++L    P   FS+ +  +   + +F   FT E ++K    G F H  ++ R+ +N+ D  V +   L  +   SS+++                   + +  VLRVLRP R +N    LK +   V++A+ ++  +M +T L+      +G+ L +G F++ C          T+ +      C  KG     ++   N       L  N  F +FDNV +A + +F   T EGW  +LY A  S 
Sbjct:  813 TNPVRVFCHRLINHHIFTNLILVFIMLSSVSLAAEDPIRNFSARNIVLGYADYVFTSMFTFEIILKMTTYGAFLHKGAFCRNYFNLLDLLV-VGVSLVSFGIQSSAISV------------------VKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIMIVTTLLQFMFACIGVQLFKGKFYR-C----------TDEAKSSPEEC--KGTYILYKDGDVNQPTIHKRLWHNSDF-NFDNVLMAMMALFTVSTFEGWPALLYKAIDSN 1055

[Close]

BLAST of EWM21028.1 vs. NCBI_GenBank
Match: gi|1079735555|ref|XP_018536966.1| (PREDICTED: voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X4 [Lates calcarifer])

HSP 1 Score: 171.014 bits (432), Expect = 3.745e-41
Identity = 106/348 (30.46%), Postives = 172/348 (49.43%), Query Frame = 0

Query:  255 FHIPITHPLRLPAVLLFDSVAWDAGILLLVLLNALTLTFWRP--TNAFSSSSQAILLFEIIFQLCFTNEAVVKFIALGLFRHPRSYFRDPWNVFDFFVLIAAWLALYASFSSSVAPPPDTSPDSPNAAPSLHG--------PLMVFGVLRVLRPFRILNLLPELKRLTGAVYLALPSLTTLMSLTLLVFVTLGVVGLNLLRGTFHQQCYRPRGNYFEFTEASTDGLAL-----CSLKGETGGGRECPANFV-CRDAPLGPNLGFTSFDNVWVAFLTIFQCMTQEGWVQVLYWARQSGG-RYTTAYFL-LIFFLSFFLFNLIIVFVIVNYSLSQE----RGAIDRLRER 580
            F + + +P+R   + L +   +D  IL+ +  N + L  + P   +  +S++  +   E  F + FT E  +K IA GL  H  +Y R+ WN+ DF +++   + L++     +     T  D  ++ PS+HG         +      RVLRP R+++ +P L+ +  ++  A+  L  +  L L V +   ++GL L  G  H  CY           A +D +A      C++   +G GR+CP N   CR+   GPN G T+FDN   A LT+FQC+T EGW  VLYW   + G      YF+ L+ F SFF+ NL++  +   +S  +E    RG   +LRE+
Sbjct:   80 FCLNLNNPIRRACISLVEWKPFDIFILIAIFANCMALAVYVPFPEDDSNSTNHDLETVEYAFLIIFTIETFLKIIAYGLVMHQNAYVRNGWNMLDFVIVV---IGLFSVVLELLTKDEKTEGDGESSHPSMHGHGGKPGGFDVKALRAFRVLRPLRLVSGVPSLQVVLNSIIKAMVPLLHIALLVLFVIIIYAIIGLELFIGKMHATCYM----------AGSDAIAEEEPAPCAI---SGHGRQCPMNGTECREGWQGPNGGITNFDNFLFAMLTVFQCITMEGWTDVLYWMNDAMGFELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAKARGDFQKLREK 411

HSP 2 Score: 83.9593 bits (206), Expect = 5.089e-13
Identity = 71/276 (25.72%), Postives = 124/276 (44.93%), Query Frame = 0

Query:  260 THPLRLPAVLLFDSVAWDAGILLLVLLNALTLTFWRPTNAFSSSSQAILLFEIIFQLCFTNEAVVKFIALGLFRHPRSYFRDPWNVFDFFVLIAAWLALYASFSSSVAPPPDTSPDSPNAAPSLHGPLMVFGVLRVLRPFRILNLLPELKRLTGAVYLALPSLTTLMSLTLLVFVTLGVVGLNLLRGTFHQQCYRPRGNYFEFTEASTDGLALCSLKGETGGGRECPANFVCRDAPLGPNLGFTSFDNVWVAFLTIFQCMTQEGWVQVLYWARQSG 535
            T+P+R+    L +   +   IL+ ++L++++L    P   FS+ +  +  F+  F   FT E V+K    G F H  ++ R+ +N+ D  V +   L  +   SS+++                   + +  VLRVLRP R +N    LK +   V++A+ ++  +M +T L+      +G+ L +G F++ C          T+ +      C  KG     ++   N       L  N  F +FDNV +A + +F   T EGW  +LY A  S 
Sbjct:  813 TNPVRVFCHRLINHHIFTNLILVFIMLSSVSLAAEDPIRNFSARNIILGYFDYAFTAIFTVEIVLKMTTYGAFLHKGAFCRNYFNLLDLLV-VGVSLVSFGIQSSAISV------------------VKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIMIVTTLLQFMFACIGVQLFKGKFYR-C----------TDEAKSSPEEC--KGTYILYKDGDVNQPTIHKRLWHNSDF-NFDNVLMAMMALFTVSTFEGWPALLYKAIDSN 1055

[Close]

BLAST of EWM21028.1 vs. NCBI_GenBank
Match: gi|1079735549|ref|XP_018536963.1| (PREDICTED: voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X1 [Lates calcarifer])

HSP 1 Score: 171.014 bits (432), Expect = 3.774e-41
Identity = 106/348 (30.46%), Postives = 172/348 (49.43%), Query Frame = 0

Query:  255 FHIPITHPLRLPAVLLFDSVAWDAGILLLVLLNALTLTFWRP--TNAFSSSSQAILLFEIIFQLCFTNEAVVKFIALGLFRHPRSYFRDPWNVFDFFVLIAAWLALYASFSSSVAPPPDTSPDSPNAAPSLHG--------PLMVFGVLRVLRPFRILNLLPELKRLTGAVYLALPSLTTLMSLTLLVFVTLGVVGLNLLRGTFHQQCYRPRGNYFEFTEASTDGLAL-----CSLKGETGGGRECPANFV-CRDAPLGPNLGFTSFDNVWVAFLTIFQCMTQEGWVQVLYWARQSGG-RYTTAYFL-LIFFLSFFLFNLIIVFVIVNYSLSQE----RGAIDRLRER 580
            F + + +P+R   + L +   +D  IL+ +  N + L  + P   +  +S++  +   E  F + FT E  +K IA GL  H  +Y R+ WN+ DF +++   + L++     +     T  D  ++ PS+HG         +      RVLRP R+++ +P L+ +  ++  A+  L  +  L L V +   ++GL L  G  H  CY           A +D +A      C++   +G GR+CP N   CR+   GPN G T+FDN   A LT+FQC+T EGW  VLYW   + G      YF+ L+ F SFF+ NL++  +   +S  +E    RG   +LRE+
Sbjct:   80 FCLNLNNPIRRACISLVEWKPFDIFILIAIFANCMALAVYVPFPEDDSNSTNHDLETVEYAFLIIFTIETFLKIIAYGLVMHQNAYVRNGWNMLDFVIVV---IGLFSVVLELLTKDEKTEGDGESSHPSMHGHGGKPGGFDVKALRAFRVLRPLRLVSGVPSLQVVLNSIIKAMVPLLHIALLVLFVIIIYAIIGLELFIGKMHATCYM----------AGSDAIAEEEPAPCAI---SGHGRQCPMNGTECREGWQGPNGGITNFDNFLFAMLTVFQCITMEGWTDVLYWMNDAMGFELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAKARGDFQKLREK 411

HSP 2 Score: 74.7146 bits (182), Expect = 3.827e-10
Identity = 72/296 (24.32%), Postives = 127/296 (42.91%), Query Frame = 0

Query:  260 THPLRLPAVLLFDSVAWDAGILLLVLLNALTLTFWRPTNAFSSSS----------QAILLFEIIFQL----------CFTNEAVVKFIALGLFRHPRSYFRDPWNVFDFFVLIAAWLALYASFSSSVAPPPDTSPDSPNAAPSLHGPLMVFGVLRVLRPFRILNLLPELKRLTGAVYLALPSLTTLMSLTLLVFVTLGVVGLNLLRGTFHQQCYRPRGNYFEFTEASTDGLALCSLKGETGGGRECPANFVCRDAPLGPNLGFTSFDNVWVAFLTIFQCMTQEGWVQVLYWARQSG 535
            T+P+R+    L +   +   IL+ ++L++++L    P   FS+ +           AI   EI+ ++           FT E ++K    G F H  ++ R+ +N+ D  V +   L  +   SS+++                   + +  VLRVLRP R +N    LK +   V++A+ ++  +M +T L+      +G+ L +G F++ C          T+ +      C  KG     ++   N       L  N  F +FDNV +A + +F   T EGW  +LY A  S 
Sbjct:  838 TNPVRVFCHRLINHHIFTNLILVFIMLSSVSLAAEDPIRNFSARNIILGYFDYAFTAIFTVEIVLKVLGYADYVFTSMFTFEIILKMTTYGAFLHKGAFCRNYFNLLDLLV-VGVSLVSFGIQSSAISV------------------VKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIMIVTTLLQFMFACIGVQLFKGKFYR-C----------TDEAKSSPEEC--KGTYILYKDGDVNQPTIHKRLWHNSDF-NFDNVLMAMMALFTVSTFEGWPALLYKAIDSN 1100

[Close]

BLAST of EWM21028.1 vs. NCBI_GenBank
Match: gi|1079735551|ref|XP_018536964.1| (PREDICTED: voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X2 [Lates calcarifer])

HSP 1 Score: 171.014 bits (432), Expect = 3.828e-41
Identity = 106/348 (30.46%), Postives = 172/348 (49.43%), Query Frame = 0

Query:  255 FHIPITHPLRLPAVLLFDSVAWDAGILLLVLLNALTLTFWRP--TNAFSSSSQAILLFEIIFQLCFTNEAVVKFIALGLFRHPRSYFRDPWNVFDFFVLIAAWLALYASFSSSVAPPPDTSPDSPNAAPSLHG--------PLMVFGVLRVLRPFRILNLLPELKRLTGAVYLALPSLTTLMSLTLLVFVTLGVVGLNLLRGTFHQQCYRPRGNYFEFTEASTDGLAL-----CSLKGETGGGRECPANFV-CRDAPLGPNLGFTSFDNVWVAFLTIFQCMTQEGWVQVLYWARQSGG-RYTTAYFL-LIFFLSFFLFNLIIVFVIVNYSLSQE----RGAIDRLRER 580
            F + + +P+R   + L +   +D  IL+ +  N + L  + P   +  +S++  +   E  F + FT E  +K IA GL  H  +Y R+ WN+ DF +++   + L++     +     T  D  ++ PS+HG         +      RVLRP R+++ +P L+ +  ++  A+  L  +  L L V +   ++GL L  G  H  CY           A +D +A      C++   +G GR+CP N   CR+   GPN G T+FDN   A LT+FQC+T EGW  VLYW   + G      YF+ L+ F SFF+ NL++  +   +S  +E    RG   +LRE+
Sbjct:   80 FCLNLNNPIRRACISLVEWKPFDIFILIAIFANCMALAVYVPFPEDDSNSTNHDLETVEYAFLIIFTIETFLKIIAYGLVMHQNAYVRNGWNMLDFVIVV---IGLFSVVLELLTKDEKTEGDGESSHPSMHGHGGKPGGFDVKALRAFRVLRPLRLVSGVPSLQVVLNSIIKAMVPLLHIALLVLFVIIIYAIIGLELFIGKMHATCYM----------AGSDAIAEEEPAPCAI---SGHGRQCPMNGTECREGWQGPNGGITNFDNFLFAMLTVFQCITMEGWTDVLYWMNDAMGFELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAKARGDFQKLREK 411

HSP 2 Score: 83.5741 bits (205), Expect = 5.465e-13
Identity = 71/276 (25.72%), Postives = 124/276 (44.93%), Query Frame = 0

Query:  260 THPLRLPAVLLFDSVAWDAGILLLVLLNALTLTFWRPTNAFSSSSQAILLFEIIFQLCFTNEAVVKFIALGLFRHPRSYFRDPWNVFDFFVLIAAWLALYASFSSSVAPPPDTSPDSPNAAPSLHGPLMVFGVLRVLRPFRILNLLPELKRLTGAVYLALPSLTTLMSLTLLVFVTLGVVGLNLLRGTFHQQCYRPRGNYFEFTEASTDGLALCSLKGETGGGRECPANFVCRDAPLGPNLGFTSFDNVWVAFLTIFQCMTQEGWVQVLYWARQSG 535
            T+P+R+    L +   +   IL+ ++L++++L    P   FS+ +  +  F+  F   FT E V+K    G F H  ++ R+ +N+ D  V +   L  +   SS+++                   + +  VLRVLRP R +N    LK +   V++A+ ++  +M +T L+      +G+ L +G F++ C          T+ +      C  KG     ++   N       L  N  F +FDNV +A + +F   T EGW  +LY A  S 
Sbjct:  838 TNPVRVFCHRLINHHIFTNLILVFIMLSSVSLAAEDPIRNFSARNIILGYFDYAFTAIFTVEIVLKMTTYGAFLHKGAFCRNYFNLLDLLV-VGVSLVSFGIQSSAISV------------------VKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIMIVTTLLQFMFACIGVQLFKGKFYR-C----------TDEAKSSPEEC--KGTYILYKDGDVNQPTIHKRLWHNSDF-NFDNVLMAMMALFTVSTFEGWPALLYKAIDSN 1080

[Close]

BLAST of EWM21028.1 vs. NCBI_GenBank
Match: gi|1129953561|ref|XP_019736327.1| (PREDICTED: voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X8 [Hippocampus comes])

HSP 1 Score: 169.859 bits (429), Expect = 8.338e-41
Identity = 104/343 (30.32%), Postives = 169/343 (49.27%), Query Frame = 0

Query:  255 FHIPITHPLRLPAVLLFDSVAWDAGILLLVLLNALTLTFWRP--TNAFSSSSQAILLFEIIFQLCFTNEAVVKFIALGLFRHPRSYFRDPWNVFDFFVLIAAWLALYASFSSSVAPPPDTSPDSPNAAPSLHG--------PLMVFGVLRVLRPFRILNLLPELKRLTGAVYLALPSLTTLMSLTLLVFVTLGVVGLNLLRGTFHQQCYRPRGNYFEFTEASTDGLALCSLKGETGGGRECPANFV-CRDAPLGPNLGFTSFDNVWVAFLTIFQCMTQEGWVQVLYWARQSGG-RYTTAYFL-LIFFLSFFLFNLIIVFVIVNYSLSQE----RGAIDRLRER 580
            F + + +P+R   + L +   +D  IL+ +  N + L  + P   +  +S++  +   E  F + FT E  +K IA GL  H  +Y R+ WN+ DF +++   + L++     +        +     PS+HG         +      RVLRP R+++ +P L+ +  ++  A+  L  +  L L V +   ++GL L  G  H  CY P  +     +A     A C++   +G GR+CP N   CR+   GPN G T+FDN   A LT+FQC+T EGW  VLYW   + G      YF+ L+ F SFF+ NL++  +   +S  +E    RG   +LRE+
Sbjct:   91 FCLNLNNPIRRACISLVEWKPFDIFILIAIFANCMALAVYVPFPEDDSNSTNHDLETVEYAFLIIFTIETFLKIIAYGLVMHQNAYVRNGWNMLDFVIVV---IGLFSVVLEILTKDEKADGEGEEHHPSMHGHGGKPGGFDVKALRAFRVLRPLRLVSGVPSLQVVLNSIIKAMVPLLHIALLVLFVIIIYAIIGLELFIGKMHATCYLPGSDIIAEEDA-----APCAI---SGHGRQCPINGTECREGWQGPNGGITNFDNFLFAMLTVFQCITMEGWTDVLYWMNDAMGFELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAKARGDFQKLREK 422

[Close]

BLAST of EWM21028.1 vs. NCBI_GenBank
Match: gi|1129953553|ref|XP_019736323.1| (PREDICTED: voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X4 [Hippocampus comes])

HSP 1 Score: 169.474 bits (428), Expect = 1.209e-40
Identity = 104/343 (30.32%), Postives = 169/343 (49.27%), Query Frame = 0

Query:  255 FHIPITHPLRLPAVLLFDSVAWDAGILLLVLLNALTLTFWRP--TNAFSSSSQAILLFEIIFQLCFTNEAVVKFIALGLFRHPRSYFRDPWNVFDFFVLIAAWLALYASFSSSVAPPPDTSPDSPNAAPSLHG--------PLMVFGVLRVLRPFRILNLLPELKRLTGAVYLALPSLTTLMSLTLLVFVTLGVVGLNLLRGTFHQQCYRPRGNYFEFTEASTDGLALCSLKGETGGGRECPANFV-CRDAPLGPNLGFTSFDNVWVAFLTIFQCMTQEGWVQVLYWARQSGG-RYTTAYFL-LIFFLSFFLFNLIIVFVIVNYSLSQE----RGAIDRLRER 580
            F + + +P+R   + L +   +D  IL+ +  N + L  + P   +  +S++  +   E  F + FT E  +K IA GL  H  +Y R+ WN+ DF +++   + L++     +        +     PS+HG         +      RVLRP R+++ +P L+ +  ++  A+  L  +  L L V +   ++GL L  G  H  CY P  +     +A     A C++   +G GR+CP N   CR+   GPN G T+FDN   A LT+FQC+T EGW  VLYW   + G      YF+ L+ F SFF+ NL++  +   +S  +E    RG   +LRE+
Sbjct:   91 FCLNLNNPIRRACISLVEWKPFDIFILIAIFANCMALAVYVPFPEDDSNSTNHDLETVEYAFLIIFTIETFLKIIAYGLVMHQNAYVRNGWNMLDFVIVV---IGLFSVVLEILTKDEKADGEGEEHHPSMHGHGGKPGGFDVKALRAFRVLRPLRLVSGVPSLQVVLNSIIKAMVPLLHIALLVLFVIIIYAIIGLELFIGKMHATCYLPGSDIIAEEDA-----APCAI---SGHGRQCPINGTECREGWQGPNGGITNFDNFLFAMLTVFQCITMEGWTDVLYWMNDAMGFELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAKARGDFQKLREK 422

HSP 2 Score: 79.7221 bits (195), Expect = 8.831e-12
Identity = 68/276 (24.64%), Postives = 124/276 (44.93%), Query Frame = 0

Query:  260 THPLRLPAVLLFDSVAWDAGILLLVLLNALTLTFWRPTNAFSSSSQAILLFEIIFQLCFTNEAVVKFIALGLFRHPRSYFRDPWNVFDFFVLIAAWLALYASFSSSVAPPPDTSPDSPNAAPSLHGPLMVFGVLRVLRPFRILNLLPELKRLTGAVYLALPSLTTLMSLTLLVFVTLGVVGLNLLRGTFHQQCYRPRGNYFEFTEASTDGLALCSLKGETGGGRECPANFVCRDAPLGPNLGFTSFDNVWVAFLTIFQCMTQEGWVQVLYWARQSG 535
            T+P+R+    L +   +   IL+ ++L++++L    P   FS+ +  +   + +F   FT E ++K    G F H  ++ R+ +N+ D  V +   L  +   SS+++                   + +  VLRVLRP R +N    LK +   V++A+ ++  +M +T L+      +G+ L +G F++ C          T+ +      C  KG     ++   N       +  N  F +FDNV +A + +F   T EGW  +LY A  S 
Sbjct:  848 TNPVRVFCHKLINHHIFTNLILVFIMLSSVSLAAEDPIRNFSARNIVLGYADYVFTSMFTFEIILKMTTYGAFLHKGAFCRNYFNLLDLLV-VGVSLVSFGIQSSAISV------------------VKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIMIVTTLLQFMFACIGVQLFKGKFYR-C----------TDEAKSSPEEC--KGTYILYKDGDVNQPTIHKRVWHNSDF-NFDNVLMAMMALFTVSTFEGWPALLYKAIDSN 1090

[Close]

BLAST of EWM21028.1 vs. NCBI_GenBank
Match: gi|1129953555|ref|XP_019736324.1| (PREDICTED: voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X5 [Hippocampus comes])

HSP 1 Score: 169.474 bits (428), Expect = 1.220e-40
Identity = 104/343 (30.32%), Postives = 169/343 (49.27%), Query Frame = 0

Query:  255 FHIPITHPLRLPAVLLFDSVAWDAGILLLVLLNALTLTFWRP--TNAFSSSSQAILLFEIIFQLCFTNEAVVKFIALGLFRHPRSYFRDPWNVFDFFVLIAAWLALYASFSSSVAPPPDTSPDSPNAAPSLHG--------PLMVFGVLRVLRPFRILNLLPELKRLTGAVYLALPSLTTLMSLTLLVFVTLGVVGLNLLRGTFHQQCYRPRGNYFEFTEASTDGLALCSLKGETGGGRECPANFV-CRDAPLGPNLGFTSFDNVWVAFLTIFQCMTQEGWVQVLYWARQSGG-RYTTAYFL-LIFFLSFFLFNLIIVFVIVNYSLSQE----RGAIDRLRER 580
            F + + +P+R   + L +   +D  IL+ +  N + L  + P   +  +S++  +   E  F + FT E  +K IA GL  H  +Y R+ WN+ DF +++   + L++     +        +     PS+HG         +      RVLRP R+++ +P L+ +  ++  A+  L  +  L L V +   ++GL L  G  H  CY P  +     +A     A C++   +G GR+CP N   CR+   GPN G T+FDN   A LT+FQC+T EGW  VLYW   + G      YF+ L+ F SFF+ NL++  +   +S  +E    RG   +LRE+
Sbjct:   91 FCLNLNNPIRRACISLVEWKPFDIFILIAIFANCMALAVYVPFPEDDSNSTNHDLETVEYAFLIIFTIETFLKIIAYGLVMHQNAYVRNGWNMLDFVIVV---IGLFSVVLEILTKDEKADGEGEEHHPSMHGHGGKPGGFDVKALRAFRVLRPLRLVSGVPSLQVVLNSIIKAMVPLLHIALLVLFVIIIYAIIGLELFIGKMHATCYLPGSDIIAEEDA-----APCAI---SGHGRQCPINGTECREGWQGPNGGITNFDNFLFAMLTVFQCITMEGWTDVLYWMNDAMGFELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAKARGDFQKLREK 422

HSP 2 Score: 82.4185 bits (202), Expect = 1.481e-12
Identity = 70/276 (25.36%), Postives = 124/276 (44.93%), Query Frame = 0

Query:  260 THPLRLPAVLLFDSVAWDAGILLLVLLNALTLTFWRPTNAFSSSSQAILLFEIIFQLCFTNEAVVKFIALGLFRHPRSYFRDPWNVFDFFVLIAAWLALYASFSSSVAPPPDTSPDSPNAAPSLHGPLMVFGVLRVLRPFRILNLLPELKRLTGAVYLALPSLTTLMSLTLLVFVTLGVVGLNLLRGTFHQQCYRPRGNYFEFTEASTDGLALCSLKGETGGGRECPANFVCRDAPLGPNLGFTSFDNVWVAFLTIFQCMTQEGWVQVLYWARQSG 535
            T+P+R+    L +   +   IL+ ++L++++L    P   FS+ +  +  F+  F   FT E V+K    G F H  ++ R+ +N+ D  V +   L  +   SS+++                   + +  VLRVLRP R +N    LK +   V++A+ ++  +M +T L+      +G+ L +G F++ C          T+ +      C  KG     ++   N       +  N  F +FDNV +A + +F   T EGW  +LY A  S 
Sbjct:  848 TNPVRVFCHKLINHHIFTNLILVFIMLSSVSLAAEDPIRNFSARNIILGYFDYAFTAIFTVEIVLKMTTYGAFLHKGAFCRNYFNLLDLLV-VGVSLVSFGIQSSAISV------------------VKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIMIVTTLLQFMFACIGVQLFKGKFYR-C----------TDEAKSSPEEC--KGTYILYKDGDVNQPTIHKRVWHNSDF-NFDNVLMAMMALFTVSTFEGWPALLYKAIDSN 1090

[Close]

BLAST of EWM21028.1 vs. NCBI_GenBank
Match: gi|1129953565|ref|XP_019736329.1| (PREDICTED: voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X10 [Hippocampus comes])

HSP 1 Score: 169.088 bits (427), Expect = 1.333e-40
Identity = 104/343 (30.32%), Postives = 169/343 (49.27%), Query Frame = 0

Query:  255 FHIPITHPLRLPAVLLFDSVAWDAGILLLVLLNALTLTFWRP--TNAFSSSSQAILLFEIIFQLCFTNEAVVKFIALGLFRHPRSYFRDPWNVFDFFVLIAAWLALYASFSSSVAPPPDTSPDSPNAAPSLHG--------PLMVFGVLRVLRPFRILNLLPELKRLTGAVYLALPSLTTLMSLTLLVFVTLGVVGLNLLRGTFHQQCYRPRGNYFEFTEASTDGLALCSLKGETGGGRECPANFV-CRDAPLGPNLGFTSFDNVWVAFLTIFQCMTQEGWVQVLYWARQSGG-RYTTAYFL-LIFFLSFFLFNLIIVFVIVNYSLSQE----RGAIDRLRER 580
            F + + +P+R   + L +   +D  IL+ +  N + L  + P   +  +S++  +   E  F + FT E  +K IA GL  H  +Y R+ WN+ DF +++   + L++     +        +     PS+HG         +      RVLRP R+++ +P L+ +  ++  A+  L  +  L L V +   ++GL L  G  H  CY P  +     +A     A C++   +G GR+CP N   CR+   GPN G T+FDN   A LT+FQC+T EGW  VLYW   + G      YF+ L+ F SFF+ NL++  +   +S  +E    RG   +LRE+
Sbjct:   91 FCLNLNNPIRRACISLVEWKPFDIFILIAIFANCMALAVYVPFPEDDSNSTNHDLETVEYAFLIIFTIETFLKIIAYGLVMHQNAYVRNGWNMLDFVIVV---IGLFSVVLEILTKDEKADGEGEEHHPSMHGHGGKPGGFDVKALRAFRVLRPLRLVSGVPSLQVVLNSIIKAMVPLLHIALLVLFVIIIYAIIGLELFIGKMHATCYLPGSDIIAEEDA-----APCAI---SGHGRQCPINGTECREGWQGPNGGITNFDNFLFAMLTVFQCITMEGWTDVLYWMNDAMGFELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAKARGDFQKLREK 422

HSP 2 Score: 79.7221 bits (195), Expect = 8.809e-12
Identity = 68/276 (24.64%), Postives = 124/276 (44.93%), Query Frame = 0

Query:  260 THPLRLPAVLLFDSVAWDAGILLLVLLNALTLTFWRPTNAFSSSSQAILLFEIIFQLCFTNEAVVKFIALGLFRHPRSYFRDPWNVFDFFVLIAAWLALYASFSSSVAPPPDTSPDSPNAAPSLHGPLMVFGVLRVLRPFRILNLLPELKRLTGAVYLALPSLTTLMSLTLLVFVTLGVVGLNLLRGTFHQQCYRPRGNYFEFTEASTDGLALCSLKGETGGGRECPANFVCRDAPLGPNLGFTSFDNVWVAFLTIFQCMTQEGWVQVLYWARQSG 535
            T+P+R+    L +   +   IL+ ++L++++L    P   FS+ +  +   + +F   FT E ++K    G F H  ++ R+ +N+ D  V +   L  +   SS+++                   + +  VLRVLRP R +N    LK +   V++A+ ++  +M +T L+      +G+ L +G F++ C          T+ +      C  KG     ++   N       +  N  F +FDNV +A + +F   T EGW  +LY A  S 
Sbjct:  848 TNPVRVFCHKLINHHIFTNLILVFIMLSSVSLAAEDPIRNFSARNIVLGYADYVFTSMFTFEIILKMTTYGAFLHKGAFCRNYFNLLDLLV-VGVSLVSFGIQSSAISV------------------VKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIMIVTTLLQFMFACIGVQLFKGKFYR-C----------TDEAKSSPEEC--KGTYILYKDGDVNQPTIHKRVWHNSDF-NFDNVLMAMMALFTVSTFEGWPALLYKAIDSN 1090

[Close]

BLAST of EWM21028.1 vs. NCBI_GenBank
Match: gi|1129953563|ref|XP_019736328.1| (PREDICTED: voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X9 [Hippocampus comes])

HSP 1 Score: 169.088 bits (427), Expect = 1.357e-40
Identity = 104/343 (30.32%), Postives = 169/343 (49.27%), Query Frame = 0

Query:  255 FHIPITHPLRLPAVLLFDSVAWDAGILLLVLLNALTLTFWRP--TNAFSSSSQAILLFEIIFQLCFTNEAVVKFIALGLFRHPRSYFRDPWNVFDFFVLIAAWLALYASFSSSVAPPPDTSPDSPNAAPSLHG--------PLMVFGVLRVLRPFRILNLLPELKRLTGAVYLALPSLTTLMSLTLLVFVTLGVVGLNLLRGTFHQQCYRPRGNYFEFTEASTDGLALCSLKGETGGGRECPANFV-CRDAPLGPNLGFTSFDNVWVAFLTIFQCMTQEGWVQVLYWARQSGG-RYTTAYFL-LIFFLSFFLFNLIIVFVIVNYSLSQE----RGAIDRLRER 580
            F + + +P+R   + L +   +D  IL+ +  N + L  + P   +  +S++  +   E  F + FT E  +K IA GL  H  +Y R+ WN+ DF +++   + L++     +        +     PS+HG         +      RVLRP R+++ +P L+ +  ++  A+  L  +  L L V +   ++GL L  G  H  CY P  +     +A     A C++   +G GR+CP N   CR+   GPN G T+FDN   A LT+FQC+T EGW  VLYW   + G      YF+ L+ F SFF+ NL++  +   +S  +E    RG   +LRE+
Sbjct:   91 FCLNLNNPIRRACISLVEWKPFDIFILIAIFANCMALAVYVPFPEDDSNSTNHDLETVEYAFLIIFTIETFLKIIAYGLVMHQNAYVRNGWNMLDFVIVV---IGLFSVVLEILTKDEKADGEGEEHHPSMHGHGGKPGGFDVKALRAFRVLRPLRLVSGVPSLQVVLNSIIKAMVPLLHIALLVLFVIIIYAIIGLELFIGKMHATCYLPGSDIIAEEDA-----APCAI---SGHGRQCPINGTECREGWQGPNGGITNFDNFLFAMLTVFQCITMEGWTDVLYWMNDAMGFELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAKARGDFQKLREK 422

HSP 2 Score: 82.4185 bits (202), Expect = 1.465e-12
Identity = 70/276 (25.36%), Postives = 124/276 (44.93%), Query Frame = 0

Query:  260 THPLRLPAVLLFDSVAWDAGILLLVLLNALTLTFWRPTNAFSSSSQAILLFEIIFQLCFTNEAVVKFIALGLFRHPRSYFRDPWNVFDFFVLIAAWLALYASFSSSVAPPPDTSPDSPNAAPSLHGPLMVFGVLRVLRPFRILNLLPELKRLTGAVYLALPSLTTLMSLTLLVFVTLGVVGLNLLRGTFHQQCYRPRGNYFEFTEASTDGLALCSLKGETGGGRECPANFVCRDAPLGPNLGFTSFDNVWVAFLTIFQCMTQEGWVQVLYWARQSG 535
            T+P+R+    L +   +   IL+ ++L++++L    P   FS+ +  +  F+  F   FT E V+K    G F H  ++ R+ +N+ D  V +   L  +   SS+++                   + +  VLRVLRP R +N    LK +   V++A+ ++  +M +T L+      +G+ L +G F++ C          T+ +      C  KG     ++   N       +  N  F +FDNV +A + +F   T EGW  +LY A  S 
Sbjct:  848 TNPVRVFCHKLINHHIFTNLILVFIMLSSVSLAAEDPIRNFSARNIILGYFDYAFTAIFTVEIVLKMTTYGAFLHKGAFCRNYFNLLDLLV-VGVSLVSFGIQSSAISV------------------VKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIMIVTTLLQFMFACIGVQLFKGKFYR-C----------TDEAKSSPEEC--KGTYILYKDGDVNQPTIHKRVWHNSDF-NFDNVLMAMMALFTVSTFEGWPALLYKAIDSN 1090

The following BLAST results are available for this feature:

BLAST of EWM21028.1 vs. NCBI_GenBank

BLAST of EWM21028.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585101033\|gb\|EWM21028.1\|	0.000e+0	100.00	voltage-dependent l-type ca channel alpha 1 subuni...	[more]
gi\|1079735553\|ref\|XP_018536965.1\|	2.818e-41	30.46	PREDICTED: voltage-dependent L-type calcium channe...	[more]
gi\|1079735555\|ref\|XP_018536966.1\|	3.745e-41	30.46	PREDICTED: voltage-dependent L-type calcium channe...	[more]
gi\|1079735549\|ref\|XP_018536963.1\|	3.774e-41	30.46	PREDICTED: voltage-dependent L-type calcium channe...	[more]
gi\|1079735551\|ref\|XP_018536964.1\|	3.828e-41	30.46	PREDICTED: voltage-dependent L-type calcium channe...	[more]
gi\|1129953561\|ref\|XP_019736327.1\|	8.338e-41	30.32	PREDICTED: voltage-dependent L-type calcium channe...	[more]
gi\|1129953553\|ref\|XP_019736323.1\|	1.209e-40	30.32	PREDICTED: voltage-dependent L-type calcium channe...	[more]
gi\|1129953555\|ref\|XP_019736324.1\|	1.220e-40	30.32	PREDICTED: voltage-dependent L-type calcium channe...	[more]
gi\|1129953565\|ref\|XP_019736329.1\|	1.333e-40	30.32	PREDICTED: voltage-dependent L-type calcium channe...	[more]
gi\|1129953563\|ref\|XP_019736328.1\|	1.357e-40	30.32	PREDICTED: voltage-dependent L-type calcium channe...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna9676	rna9676	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications