rna9674, rna9674 (mRNA) Nannochloropsis gaditana

Overview
Namerna9674
Unique Namerna9674
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1243
Alignment locationKK037255.1:118635..119723 +

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Properties
Property NameValue
Product30s ribosomal protein s16
Orig transcript idgnl|cribi|Naga_100478g3.9247.mrna
Orig protein idgnl|cribi|Naga_100478g3.9247
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:118635..119723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100478g3gene9394Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9674rna9674-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21030.1cds9643Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9674 ID=rna9674|Name=rna9674|organism=Nannochloropsis gaditana|type=mRNA|length=1243bp
GCCCTCCCCTTCGTCTCGGTGCCCAGACCCTTCCTCGTGACCAAGCGGCT
GCTGGTCATGTCCTTCCTGGAAGGAACTTCCCTCTCCCGCTTGGAAGACG
GCGAGGTGCAGCGCCGGAAGAGGCAGGGGGGGAAGGAGGGAGGGAGGGTG
GGCAGGCGGCGGCGATGGTTGACCCGAGTGGTTACCTTGGGGATGGCGGG
GCGGGAGGGCGGGGGGGAGGGCGTGGGAGAGGGAGGGGGGAAAGGCGGGG
GGCTCCTGGGCGAGCGGCTGCAGAAGAAGATCGGACAGGGGTTGATCGAG
AAGATGGCGGAGGCTTGGGGCTACATGCTGTGGCACTGTGACTGCTTCCA
GGCCGATCCGCACCCTGGCAACATCCTCCTCATGAAGAATTTCCGGCTGG
GTATCCTAGACTGGGGTCAGACCAAGAAGTTGGACGGCCCCCTTAAGCAC
AAATTGGCACGCCTCCTCGTCGCCATGCACCAGGCGGAGAGGGAGGGTGG
GAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGGTCTGCGTTCGGC
GGCGGGACCAGGAACGCATCAAGCGGGAATTTTACCGCCTGGGCGTCGTC
ACCGAACGGGAGGATGACGCAGAGGAGGTCTGCAAAATGGTTTTTTCCAT
GTTCGATACCCGGTATGTCCCGAATTTTTGCGGCAACCCCTTTGACAAGG
ATCATGCTCTGCACGCGAACGCGGTCGTGAGCTTTCCAGCCGACTTGTGC
TACGTCCTCAGGACGGTCCAGATCCTCCGTGGGATGAGTGGGGGTCTGGG
GGTGGACTTTGACCTCACGCAGGTGTGGGCTCCAATGGCGGAGGAATTTT
TGAAGCGTGAGGCGGCGGTGAAGAAGGGAAGGACAAGCGTGGGGAGGGAG
GACGAAGATGTTTTGGATTTAAGTCGCGCGGTGACACTTTGAAGGGGGAA
TGAGAAAGTGACGCCTCAAGGGAAATTTGGAGAGCGAAACTTGATGAGGC
GAGGAAGTTGGTGTAGCCGAGGGATAAAGGAGGCAAAGTCAGAGGGTCAT
TTTGTGAGCAAGAAATGCATAAAATGTACGTGAGATCACTGGGTTCGTCC
GGCAAACGGAGCGTGAAAGCAGTTTTTAGAACATTATATCTTCTTGTAAA
TAAAGAAATAAGCGCCATTAATTTGAAAATACGGGTGAATGAATCGAAGC
AAAGGCGGGAATGGGCTCGTATTAACTATTCACCTGCTAAAGA
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protein sequence of rna9674

>rna9674-protein ID=rna9674-protein|Name=rna9674|organism=Nannochloropsis gaditana|type=polypeptide|length=174bp
MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVK
EVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKE
RKEVVEAKKAAAAAARAKSQGAARQMHTESGGKRDEEKGGGLVAGPVGML
TGWAVMARLRESLSLPWARRREHV
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mRNA from alignment at KK037255.1:118635..119723+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9674 ID=rna9674|Name=rna9674|organism=Nannochloropsis gaditana|type=mRNA|length=1089bp|location=Sequence derived from alignment at KK037255.1:118635..119723+ (Nannochloropsis gaditana)
CGGGGTACCTAAACCATCATATACACTAATCATTGCCCTCGTAGACAACG
AGTCGTACTCTTGCTGGCTTGAGGCCTTGAGAACCCAGGTCCCTCTATCT
CGAGGATGTACTGTTTAACATGTGCGAAGAAGTCTCCATGAAATTCAATG
CTTGATTGGAGAGTAGCACCGCAGGGATCGTTTTAAATACATCCTCGGAT
TGCTATGGAGTGCTCAACCTCCGCTAAGCACTAAATAACCCTAATTTTCA
TTCCTGTTTCTCTCACCATACGTCAATTCACGAAGCAGTGAGCTAATCAT
GGTTGTTCGCCTGCGATTGCAACGCTTTGGCCGGCATGACCGCCCTTTCT
ATCGGATTGTTGCAGCGGACAGTCGGGCCCCACGAGACGGTCGTTTCATT
GAGCGGGTGAGTGCACCGATCGCACAAAACTATGAGAGTGTCTCAAGCAT
CGGGGATTGATTTATTCGGTAGTGACTGTCGTTTAAGACTCTTATCTAGC
CCAAAGAAATACACCAGCCACCGGTCGCAACCCACGGCTCATTTTCCTGC
CCTTCACGCCATGGCCCCCATTCATTCCTCTAGCTCGGTTCTTACGACCC
CATTGCAAGCAAAGACGGCGTTAAAGAAGTGAGGTTGCACAGTGATCGCA
TCAAGTACTGGCTTTCTGTGGGAGCCCAACCCTCAGACCGAGTGGCGTGG
CTCATGAGTAAGTACAATCTGCTGCCCGAGGCGCCGCTGCGACCGATGAC
GTTACGTCATTTACccagaaaagagaggaaagaggtggtagaggcgaaga
aagcggcagcagcagccgcccGAGCGAAGTCTCAGGGGGCTGCGCGGCAG
ATGCACACAGAGAGTGGGGGCAAAAGAgacgaagaaaaggggggcggTCT
CGTAGCAGGGCCGGTGGGCATGTTGACCGGTTGGGCGGTGATGGCTCGAT
TGAGAGAGAGCTTAAGTCTACCATGGGCGAGGAGACGCGAGCACGTGTAG
ATACAGTCACGAGGCTAtggccggaggagggcacagggatgggagggggc
tCGCGCGCATGAAGAATTAAACATTCTCAGAGGCGTTGC
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Coding sequence (CDS) from alignment at KK037255.1:118635..119723+

>rna9674 ID=rna9674|Name=rna9674|organism=Nannochloropsis gaditana|type=CDS|length=1050bp|location=Sequence derived from alignment at KK037255.1:118635..119723+ (Nannochloropsis gaditana)
ATGGTTGTTCGCCTGCGATTGCAACGCTTTGGCCGGCATGACCGCCCTTT
CTATCGGATTGTTGCAGCGGACAGTCGGGCCCCACGAGACGGTCGTTTCA
TTGAGCGGCTCGGTTCTTACGACCCCATTGCAAGCAAAGACGGCGTTAAA
GAAGTGAGGTTGCACAGTGATCGCATCAAGTACTGGCTTTCTGTGGGAGC
CCAACCCTCAGACCGAGTGGCGTGGCTCATGAGTAAGTACAATCTGCTGC
CCGAGGCGCCGCTGCGACCGATGACGTTACGTCATTTACccagaaaagag
aggaaagaggtggtagaggcgaagaaagcggcagcagcagccgcccGAGC
GAAGTCTCAGGGGGCTGCGCGGCAGATGCACACAGAGAGTGGGGGCAAAA
GAgacgaagaaaaggggggcggTCTCGTAGCAGGGCCGGTGGGCATGTTG
ACCGGTTGGGCGGTGATGGCTCGATTGAGAGAGAGCTTAAGTCTACCATG
GGCGAGGAGACGCGAGCACGTGTAGATGGTTGTTCGCCTGCGATTGCAAC
GCTTTGGCCGGCATGACCGCCCTTTCTATCGGATTGTTGCAGCGGACAGT
CGGGCCCCACGAGACGGTCGTTTCATTGAGCGGCTCGGTTCTTACGACCC
CATTGCAAGCAAAGACGGCGTTAAAGAAGTGAGGTTGCACAGTGATCGCA
TCAAGTACTGGCTTTCTGTGGGAGCCCAACCCTCAGACCGAGTGGCGTGG
CTCATGAGTAAGTACAATCTGCTGCCCGAGGCGCCGCTGCGACCGATGAC
GTTACGTCATTTACccagaaaagagaggaaagaggtggtagaggcgaaga
aagcggcagcagcagccgcccGAGCGAAGTCTCAGGGGGCTGCGCGGCAG
ATGCACACAGAGAGTGGGGGCAAAAGAgacgaagaaaaggggggcggTCT
CGTAGCAGGGCCGGTGGGCATGTTGACCGGTTGGGCGGTGATGGCTCGAT
TGAGAGAGAGCTTAAGTCTACCATGGGCGAGGAGACGCGAGCACGTGTAG
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Synonyms
Publications