EWM21030.1, cds9643 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21030.1 vs. NCBI_GenBank
Match: gi|585101035|gb|EWM21030.1| (30s ribosomal protein s16 [Nannochloropsis gaditana]) HSP 1 Score: 347.821 bits (891), Expect = 3.864e-121 Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
Query: 1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKERKEVVEAKKAAAAAARAKSQGAARQMHTESGGKRDEEKGGGLVAGPVGMLTGWAVMARLRESLSLPWARRREHV 174
MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKERKEVVEAKKAAAAAARAKSQGAARQMHTESGGKRDEEKGGGLVAGPVGMLTGWAVMARLRESLSLPWARRREHV
Sbjct: 1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKERKEVVEAKKAAAAAARAKSQGAARQMHTESGGKRDEEKGGGLVAGPVGMLTGWAVMARLRESLSLPWARRREHV 174
BLAST of EWM21030.1 vs. NCBI_GenBank
Match: gi|553181851|ref|XP_005853634.1| (small subunit ribosomal protein S16 [Nannochloropsis gaditana CCMP526] >gi|422295427|gb|EKU22726.1| small subunit ribosomal protein S16 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 346.665 bits (888), Expect = 1.321e-120 Identity = 173/174 (99.43%), Postives = 174/174 (100.00%), Query Frame = 0
Query: 1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKERKEVVEAKKAAAAAARAKSQGAARQMHTESGGKRDEEKGGGLVAGPVGMLTGWAVMARLRESLSLPWARRREHV 174
MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKERKEVVEAKKAAAAAARAKSQGAARQMHTESGGKRDEEKGGGLVAGPVGMLTGWAVMARLR+SLSLPWARRREHV
Sbjct: 1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKERKEVVEAKKAAAAAARAKSQGAARQMHTESGGKRDEEKGGGLVAGPVGMLTGWAVMARLRDSLSLPWARRREHV 174
BLAST of EWM21030.1 vs. NCBI_GenBank
Match: gi|1210529140|dbj|GAX12286.1| (small subunit ribosomal protein S16 [Fistulifera solaris]) HSP 1 Score: 140.584 bits (353), Expect = 3.181e-40 Identity = 61/103 (59.22%), Postives = 87/103 (84.47%), Query Frame = 0
Query: 1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKERKE 103
MVVRLRLQRFGR PFYR+VAA+++APRDG+F++ +G+Y+PIA++DGVKE+RL +DR+KYWLSVGAQPSDRV+W++ K+ +LP P + + +P+ ER++
Sbjct: 1 MVVRLRLQRFGRTHSPFYRMVAANNKAPRDGKFLDIVGTYNPIANRDGVKEIRLKTDRLKYWLSVGAQPSDRVSWILGKFGILPPPPKKFSPQKMVPKSEREK 103
BLAST of EWM21030.1 vs. NCBI_GenBank
Match: gi|1210520225|dbj|GAX21108.1| (small subunit ribosomal protein S16 [Fistulifera solaris]) HSP 1 Score: 139.813 bits (351), Expect = 7.537e-40 Identity = 61/103 (59.22%), Postives = 86/103 (83.50%), Query Frame = 0
Query: 1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKERKE 103
MVVRLRLQRFGR PFYR+VAA++ APRDG+F++ +G+Y+PIA++DGVKE+RL +DR+KYWLSVGAQPSDRV+W++ K+ +LP P + + +P+ ER++
Sbjct: 1 MVVRLRLQRFGRTHSPFYRMVAANNEAPRDGKFLDIVGTYNPIANRDGVKEIRLKTDRLKYWLSVGAQPSDRVSWILGKFGILPPPPKKFSPQKMVPKSEREK 103
BLAST of EWM21030.1 vs. NCBI_GenBank
Match: gi|953489701|emb|CEG47067.1| (ribosomal protein s16 [Plasmopara halstedii]) HSP 1 Score: 137.117 bits (344), Expect = 6.523e-39 Identity = 63/101 (62.38%), Postives = 85/101 (84.16%), Query Frame = 0
Query: 1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKER 101
MVVRLRL R+GR D PFYRIVAAD+RAPRDG+ +E LG+Y+PIA+ DGVKE+R++S R++YW+SVGAQPSDRV++L+ N+LP P R T +++P+K+R
Sbjct: 1 MVVRLRLARWGRKDVPFYRIVAADARAPRDGKHLEILGTYNPIAASDGVKELRVNSQRVQYWMSVGAQPSDRVSYLLGLANVLPMPPTRQHTKKNIPKKDR 101
BLAST of EWM21030.1 vs. NCBI_GenBank
Match: gi|219115635|ref|XP_002178613.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410348|gb|EEC50278.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 136.732 bits (343), Expect = 1.151e-38 Identity = 61/87 (70.11%), Postives = 76/87 (87.36%), Query Frame = 0
Query: 1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAP 87
MVVRLRLQRFGR PFYR+VAA+ +APRDGR +E +G+Y+PIA+K GVKE+RL +DR+KYWLSVGAQPSDRVAW++ K+ +LP AP
Sbjct: 1 MVVRLRLQRFGRTHSPFYRMVAANHKAPRDGRHLEVVGTYNPIANKHGVKEIRLKTDRLKYWLSVGAQPSDRVAWILGKFGVLPPAP 87
BLAST of EWM21030.1 vs. NCBI_GenBank
Match: gi|223996251|ref|XP_002287799.1| (RT16, ribosomal protein 16 mitochondrial small ribosomal subunit, partial [Thalassiosira pseudonana CCMP1335] >gi|220976915|gb|EED95242.1| RT16, ribosomal protein 16 mitochondrial small ribosomal subunit, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 135.576 bits (340), Expect = 1.717e-38 Identity = 59/87 (67.82%), Postives = 76/87 (87.36%), Query Frame = 0
Query: 1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAP 87
MVVRLRLQRFGR PFYR+VAADSRAPRDG+F+E +G+Y+PIA+ G+KE+RL +DR++YW+SVGAQPSDRVAW++ K+ +LP P
Sbjct: 1 MVVRLRLQRFGRTHSPFYRMVAADSRAPRDGKFLEIVGTYNPIANNAGIKEIRLKADRLRYWISVGAQPSDRVAWILGKFGILPPPP 87
BLAST of EWM21030.1 vs. NCBI_GenBank
Match: gi|1214704765|gb|OWZ16569.1| (Ribosomal protein S16 [Phytophthora megakarya]) HSP 1 Score: 135.961 bits (341), Expect = 2.411e-38 Identity = 64/102 (62.75%), Postives = 85/102 (83.33%), Query Frame = 0
Query: 1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKERK 102
MVVRLRL R+GR D PFYRIVAAD+RAPRDG+ +E LG+++PIA+ DGVKE+R++S RI+YW+SVGAQPSDRVA L+ N+LP P R T +++P+K+R+
Sbjct: 1 MVVRLRLARWGRKDLPFYRIVAADARAPRDGKHLEILGTFNPIAASDGVKELRVNSQRIRYWMSVGAQPSDRVAHLLGLANVLPMPPTRQYTKKNVPKKDRE 102
BLAST of EWM21030.1 vs. NCBI_GenBank
Match: gi|675184121|ref|XP_008900945.1| (ribosomal protein S16 [Phytophthora parasitica INRA-310] >gi|566030363|gb|ETI53274.1| ribosomal protein S16 [Phytophthora parasitica P1569] >gi|567967971|gb|ETK93125.1| ribosomal protein S16 [Phytophthora parasitica] >gi|567996439|gb|ETL46549.1| ribosomal protein S16 [Phytophthora parasitica] >gi|568025676|gb|ETL99682.1| ribosomal protein S16 [Phytophthora parasitica] >gi|568056118|gb|ETM52836.1| ribosomal protein S16 [Phytophthora parasitica] >gi|568099173|gb|ETN13891.1| ribosomal protein S16 [Phytophthora parasitica INRA-310] >gi|570334013|gb|ETO81961.1| ribosomal protein S16 [Phytophthora parasitica P1976] >gi|570958106|gb|ETP23085.1| ribosomal protein S16 [Phytophthora parasitica CJ01A1] >gi|570993836|gb|ETP51080.1| ribosomal protein S16 [Phytophthora parasitica P10297] >gi|970628501|gb|KUF76093.1| 30S ribosomal protein S16 [Phytophthora nicotianae]) HSP 1 Score: 134.806 bits (338), Expect = 5.480e-38 Identity = 63/102 (61.76%), Postives = 85/102 (83.33%), Query Frame = 0
Query: 1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKERK 102
MVVRLRL R+GR D PFYRIVAAD+RAPRDG+ +E LG+++PIA+ DGVKE+R++S R++YW+SVGAQPSDRVA L+ N+LP P R T +++P+K+R+
Sbjct: 1 MVVRLRLARWGRKDLPFYRIVAADARAPRDGKHLEILGTFNPIAASDGVKELRVNSQRVRYWMSVGAQPSDRVAHLLGLANVLPMPPTRQYTKKNVPKKDRE 102
BLAST of EWM21030.1 vs. NCBI_GenBank
Match: gi|301099030|ref|XP_002898607.1| (30S ribosomal protein S16, putative [Phytophthora infestans T30-4] >gi|262105032|gb|EEY63084.1| 30S ribosomal protein S16, putative [Phytophthora infestans T30-4]) HSP 1 Score: 134.035 bits (336), Expect = 1.102e-37 Identity = 63/102 (61.76%), Postives = 85/102 (83.33%), Query Frame = 0
Query: 1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKERK 102
MVVRLRL R+GR D PFYRIVAAD+RAPRDG+ +E LG+++PIA+ DGVKE+R++S R++YW+SVGAQPSDRVA L+ N+LP P R T +++P+K+R+
Sbjct: 1 MVVRLRLARWGRKDLPFYRIVAADARAPRDGKHLEILGTFNPIAAGDGVKELRVNSQRVRYWMSVGAQPSDRVAHLLGLANVLPMPPTRQYTKKNVPKKDRE 102 The following BLAST results are available for this feature:
BLAST of EWM21030.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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