EWM21030.1, cds9643 (CDS) Nannochloropsis gaditana

Overview
NameEWM21030.1
Unique Namecds9643
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:118933..119040 +
Alignment locationKK037255.1:119218..119634 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21030.1
Product30s ribosomal protein s16
Orig transcript idgnl|cribi|Naga_100478g3.9247.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:118933..119040 +
KK037255.1supercontigKK037255.1:119218..119634 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR000307Ribosomal_S16
IPR023803Ribosomal_S16_dom
Homology
BLAST of EWM21030.1 vs. NCBI_GenBank
Match: gi|585101035|gb|EWM21030.1| (30s ribosomal protein s16 [Nannochloropsis gaditana])

HSP 1 Score: 347.821 bits (891), Expect = 3.864e-121
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
Query:    1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKERKEVVEAKKAAAAAARAKSQGAARQMHTESGGKRDEEKGGGLVAGPVGMLTGWAVMARLRESLSLPWARRREHV 174
            MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKERKEVVEAKKAAAAAARAKSQGAARQMHTESGGKRDEEKGGGLVAGPVGMLTGWAVMARLRESLSLPWARRREHV
Sbjct:    1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKERKEVVEAKKAAAAAARAKSQGAARQMHTESGGKRDEEKGGGLVAGPVGMLTGWAVMARLRESLSLPWARRREHV 174          
BLAST of EWM21030.1 vs. NCBI_GenBank
Match: gi|553181851|ref|XP_005853634.1| (small subunit ribosomal protein S16 [Nannochloropsis gaditana CCMP526] >gi|422295427|gb|EKU22726.1| small subunit ribosomal protein S16 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 346.665 bits (888), Expect = 1.321e-120
Identity = 173/174 (99.43%), Postives = 174/174 (100.00%), Query Frame = 0
Query:    1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKERKEVVEAKKAAAAAARAKSQGAARQMHTESGGKRDEEKGGGLVAGPVGMLTGWAVMARLRESLSLPWARRREHV 174
            MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKERKEVVEAKKAAAAAARAKSQGAARQMHTESGGKRDEEKGGGLVAGPVGMLTGWAVMARLR+SLSLPWARRREHV
Sbjct:    1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKERKEVVEAKKAAAAAARAKSQGAARQMHTESGGKRDEEKGGGLVAGPVGMLTGWAVMARLRDSLSLPWARRREHV 174          
BLAST of EWM21030.1 vs. NCBI_GenBank
Match: gi|1210529140|dbj|GAX12286.1| (small subunit ribosomal protein S16 [Fistulifera solaris])

HSP 1 Score: 140.584 bits (353), Expect = 3.181e-40
Identity = 61/103 (59.22%), Postives = 87/103 (84.47%), Query Frame = 0
Query:    1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKERKE 103
            MVVRLRLQRFGR   PFYR+VAA+++APRDG+F++ +G+Y+PIA++DGVKE+RL +DR+KYWLSVGAQPSDRV+W++ K+ +LP  P +    + +P+ ER++
Sbjct:    1 MVVRLRLQRFGRTHSPFYRMVAANNKAPRDGKFLDIVGTYNPIANRDGVKEIRLKTDRLKYWLSVGAQPSDRVSWILGKFGILPPPPKKFSPQKMVPKSEREK 103          
BLAST of EWM21030.1 vs. NCBI_GenBank
Match: gi|1210520225|dbj|GAX21108.1| (small subunit ribosomal protein S16 [Fistulifera solaris])

HSP 1 Score: 139.813 bits (351), Expect = 7.537e-40
Identity = 61/103 (59.22%), Postives = 86/103 (83.50%), Query Frame = 0
Query:    1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKERKE 103
            MVVRLRLQRFGR   PFYR+VAA++ APRDG+F++ +G+Y+PIA++DGVKE+RL +DR+KYWLSVGAQPSDRV+W++ K+ +LP  P +    + +P+ ER++
Sbjct:    1 MVVRLRLQRFGRTHSPFYRMVAANNEAPRDGKFLDIVGTYNPIANRDGVKEIRLKTDRLKYWLSVGAQPSDRVSWILGKFGILPPPPKKFSPQKMVPKSEREK 103          
BLAST of EWM21030.1 vs. NCBI_GenBank
Match: gi|953489701|emb|CEG47067.1| (ribosomal protein s16 [Plasmopara halstedii])

HSP 1 Score: 137.117 bits (344), Expect = 6.523e-39
Identity = 63/101 (62.38%), Postives = 85/101 (84.16%), Query Frame = 0
Query:    1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKER 101
            MVVRLRL R+GR D PFYRIVAAD+RAPRDG+ +E LG+Y+PIA+ DGVKE+R++S R++YW+SVGAQPSDRV++L+   N+LP  P R  T +++P+K+R
Sbjct:    1 MVVRLRLARWGRKDVPFYRIVAADARAPRDGKHLEILGTYNPIAASDGVKELRVNSQRVQYWMSVGAQPSDRVSYLLGLANVLPMPPTRQHTKKNIPKKDR 101          
BLAST of EWM21030.1 vs. NCBI_GenBank
Match: gi|219115635|ref|XP_002178613.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410348|gb|EEC50278.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 136.732 bits (343), Expect = 1.151e-38
Identity = 61/87 (70.11%), Postives = 76/87 (87.36%), Query Frame = 0
Query:    1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAP 87
            MVVRLRLQRFGR   PFYR+VAA+ +APRDGR +E +G+Y+PIA+K GVKE+RL +DR+KYWLSVGAQPSDRVAW++ K+ +LP AP
Sbjct:    1 MVVRLRLQRFGRTHSPFYRMVAANHKAPRDGRHLEVVGTYNPIANKHGVKEIRLKTDRLKYWLSVGAQPSDRVAWILGKFGVLPPAP 87          
BLAST of EWM21030.1 vs. NCBI_GenBank
Match: gi|223996251|ref|XP_002287799.1| (RT16, ribosomal protein 16 mitochondrial small ribosomal subunit, partial [Thalassiosira pseudonana CCMP1335] >gi|220976915|gb|EED95242.1| RT16, ribosomal protein 16 mitochondrial small ribosomal subunit, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 135.576 bits (340), Expect = 1.717e-38
Identity = 59/87 (67.82%), Postives = 76/87 (87.36%), Query Frame = 0
Query:    1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAP 87
            MVVRLRLQRFGR   PFYR+VAADSRAPRDG+F+E +G+Y+PIA+  G+KE+RL +DR++YW+SVGAQPSDRVAW++ K+ +LP  P
Sbjct:    1 MVVRLRLQRFGRTHSPFYRMVAADSRAPRDGKFLEIVGTYNPIANNAGIKEIRLKADRLRYWISVGAQPSDRVAWILGKFGILPPPP 87          
BLAST of EWM21030.1 vs. NCBI_GenBank
Match: gi|1214704765|gb|OWZ16569.1| (Ribosomal protein S16 [Phytophthora megakarya])

HSP 1 Score: 135.961 bits (341), Expect = 2.411e-38
Identity = 64/102 (62.75%), Postives = 85/102 (83.33%), Query Frame = 0
Query:    1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKERK 102
            MVVRLRL R+GR D PFYRIVAAD+RAPRDG+ +E LG+++PIA+ DGVKE+R++S RI+YW+SVGAQPSDRVA L+   N+LP  P R  T +++P+K+R+
Sbjct:    1 MVVRLRLARWGRKDLPFYRIVAADARAPRDGKHLEILGTFNPIAASDGVKELRVNSQRIRYWMSVGAQPSDRVAHLLGLANVLPMPPTRQYTKKNVPKKDRE 102          
BLAST of EWM21030.1 vs. NCBI_GenBank
Match: gi|675184121|ref|XP_008900945.1| (ribosomal protein S16 [Phytophthora parasitica INRA-310] >gi|566030363|gb|ETI53274.1| ribosomal protein S16 [Phytophthora parasitica P1569] >gi|567967971|gb|ETK93125.1| ribosomal protein S16 [Phytophthora parasitica] >gi|567996439|gb|ETL46549.1| ribosomal protein S16 [Phytophthora parasitica] >gi|568025676|gb|ETL99682.1| ribosomal protein S16 [Phytophthora parasitica] >gi|568056118|gb|ETM52836.1| ribosomal protein S16 [Phytophthora parasitica] >gi|568099173|gb|ETN13891.1| ribosomal protein S16 [Phytophthora parasitica INRA-310] >gi|570334013|gb|ETO81961.1| ribosomal protein S16 [Phytophthora parasitica P1976] >gi|570958106|gb|ETP23085.1| ribosomal protein S16 [Phytophthora parasitica CJ01A1] >gi|570993836|gb|ETP51080.1| ribosomal protein S16 [Phytophthora parasitica P10297] >gi|970628501|gb|KUF76093.1| 30S ribosomal protein S16 [Phytophthora nicotianae])

HSP 1 Score: 134.806 bits (338), Expect = 5.480e-38
Identity = 63/102 (61.76%), Postives = 85/102 (83.33%), Query Frame = 0
Query:    1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKERK 102
            MVVRLRL R+GR D PFYRIVAAD+RAPRDG+ +E LG+++PIA+ DGVKE+R++S R++YW+SVGAQPSDRVA L+   N+LP  P R  T +++P+K+R+
Sbjct:    1 MVVRLRLARWGRKDLPFYRIVAADARAPRDGKHLEILGTFNPIAASDGVKELRVNSQRVRYWMSVGAQPSDRVAHLLGLANVLPMPPTRQYTKKNVPKKDRE 102          
BLAST of EWM21030.1 vs. NCBI_GenBank
Match: gi|301099030|ref|XP_002898607.1| (30S ribosomal protein S16, putative [Phytophthora infestans T30-4] >gi|262105032|gb|EEY63084.1| 30S ribosomal protein S16, putative [Phytophthora infestans T30-4])

HSP 1 Score: 134.035 bits (336), Expect = 1.102e-37
Identity = 63/102 (61.76%), Postives = 85/102 (83.33%), Query Frame = 0
Query:    1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKERK 102
            MVVRLRL R+GR D PFYRIVAAD+RAPRDG+ +E LG+++PIA+ DGVKE+R++S R++YW+SVGAQPSDRVA L+   N+LP  P R  T +++P+K+R+
Sbjct:    1 MVVRLRLARWGRKDLPFYRIVAADARAPRDGKHLEILGTFNPIAAGDGVKELRVNSQRVRYWMSVGAQPSDRVAHLLGLANVLPMPPTRQYTKKNVPKKDRE 102          
The following BLAST results are available for this feature:
BLAST of EWM21030.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101035|gb|EWM21030.1|3.864e-121100.0030s ribosomal protein s16 [Nannochloropsis gaditan... [more]
gi|553181851|ref|XP_005853634.1|1.321e-12099.43small subunit ribosomal protein S16 [Nannochlorops... [more]
gi|1210529140|dbj|GAX12286.1|3.181e-4059.22small subunit ribosomal protein S16 [Fistulifera s... [more]
gi|1210520225|dbj|GAX21108.1|7.537e-4059.22small subunit ribosomal protein S16 [Fistulifera s... [more]
gi|953489701|emb|CEG47067.1|6.523e-3962.38ribosomal protein s16 [Plasmopara halstedii][more]
gi|219115635|ref|XP_002178613.1|1.151e-3870.11predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|223996251|ref|XP_002287799.1|1.717e-3867.82RT16, ribosomal protein 16 mitochondrial small rib... [more]
gi|1214704765|gb|OWZ16569.1|2.411e-3862.75Ribosomal protein S16 [Phytophthora megakarya][more]
gi|675184121|ref|XP_008900945.1|5.480e-3861.76ribosomal protein S16 [Phytophthora parasitica INR... [more]
gi|301099030|ref|XP_002898607.1|1.102e-3761.7630S ribosomal protein S16, putative [Phytophthora ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9674rna9674Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications