rna9665, rna9665 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9665
Unique Name	rna9665
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1656
Alignment location	KK037255.1:92683..94616 +

Link to JBrowse

Properties


Property Name	Value
Product	p-tefb-associated cyclin-dependent protein kinase lsk1
Orig transcript id	gnl\|cribi\|Naga_100680g2.3112.mrna
Orig protein id	gnl\|cribi\|Naga_100680g2.3112
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037255.1	supercontig	KK037255.1:92683..94616 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100680g2	gene9385	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9665	rna9665-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21038.1	cds9634	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037255.1:92683..94616+
coding sequence from alignment at KK037255.1:92683..94616+

mRNA sequence

>rna9665 ID=rna9665|Name=rna9665|organism=Nannochloropsis gaditana|type=mRNA|length=1656bp
TGGCATTTCTCACGCATAACCCGCTCCAATCTGTGCTCATCCCTCACTCA
GGCACCACACGCCTCCTTTTGGCGGCACTGAATCCCCTTAAAAGTGACTT
GGCGGTCGAGTTCGCTGAAGAAGAGGGAGCGGACGCATGATACCAATTCC
ATGCGCAGATCAATTTGAATGTCTGTTTGTTGCGAAGGGTACAGACTTCT
CGCTGCCTTCGCCCGGCTTACGTGGCCTGCTCTTCATTGAGATGGCGGTC
GAGATTCTGACCTTTGCGCGGTACTTCTTTTTTGGTGTCTTGATTGTCGC
CATGGTTGAAGGCGTTAGGGCGAGGTAGCGGGAAAGGCTTATGCATTGCC
CCCCTAGCCAAGGGTGAGCCCATTTCCCTGCATGCAGAGGATGGTTTTCA
CACTCTAGCCATCCAAAGCCTTGTTACCTTCTTGTTGCTGCCCATGTCCT
GAAGACTCTGCCGCCCGTGGCGGCTTTGCTTGTTTTGTGCCAGCAAGGGA
ACGACCCGAGGCGCCCGCCAGCCTGTAAATAGGAGAGACATGACCATACT
GCTCCACTGATTGGTTCCACGCTGTTCAAAAATGCGTAAGGGTCATTTTG
AAAAGGTGCCCGTGGGTTGTGTGCCTTGATGGGGCTGAGGCACCCGTGGT
CAGAGGCGGAGGTCGAAGGACAGGAGGGGATACGCGACCAGGACCTTGGC
AAGGCCTCACCGCGACGACAAATCATGAGGAAGGGAATGACGACGACGAC
CTCCTTCTTCCCTCCCTCTTCCTTTCTTTCCCCCCAGACAGGTATGCCGG
TCCTCTACGGCGGGCGCCAGCCCGGGCAGGAGACGGCCCCCTGGCACCTG
GAAACCCAGTTCGTCGACCGCAACGTGTACGTGAACCGGAAGGAGAAGCC
GGATCCTCGGGGGGACGATTTAATGGAGTGCGAATGCCGGTACCAGGCCG
CGGTGGCGCAGGCCCGGAAGGAAGGCGGGGGAGAAGGCGGGGGGGAGGGC
GGGGGGGAGGACGGGATCTACTGCCTGGACGAGCGGTGTTTGAATCGCAG
CATGCTCCTGGAATGTGTCCGTTGCGGCAAAGGATGCGGGAACCAGCGGC
TGAAGAAAGGATGGTGGGCCAAGACGGAGGTCCAGGCGAGCGGCGGCAAA
GGCTGGGGCCTTTACTTGGGCGAAGACATCCGGGCGGGGGCCCTGGTCGC
CGAATATGTCGGGGAGGTCATCCATGCCAAGGAGCTCGGGCTCCGGAAAA
AACAACGCAAGCGGGACCGACATTTGTATTTCTTGGCCCTGCAGTCCTCG
GAATTCATCGACGCCACGGAGAAAGGGGGGAAGGCCCGTTTTGTCAACCA
CAGTTGTGCACCGAACTGCTTGGCGGAGAAGTGGAAAGTCGGGGGCGAAT
GGCGTATGGGCTTCTACGCCAAGACGGCGCTGTCGGCGGGCACGGAGTTG
TCCATCGACTACGGGTGGGAGGCACAGCATGGGCGGAAGAAGACCAAGTG
CCTGTGCGGGACGGCCCTATGTCGAGGTTTCATCGAGAAGGACGACTCCC
TGGCGCTGGCAGAGGAGGCGGTATGGGCCCAACTGCGAGGGGTGGTGGGG
ACGTGGCGGTCGGCCCGAGGGGGGGAGGGAGGGGAGGGGGAGGAAGGGGG
GGAGGG

protein sequence of rna9665

>rna9665-protein ID=rna9665-protein|Name=rna9665|organism=Nannochloropsis gaditana|type=polypeptide|length=489bp
MNQIYVDEEGRLRLGGFEEATLYHAGGGGGTGGEGGSEGGRGKGKRKEVD
LDVGRRNLEEVWEEGKRRRKNLTAPEVLLGGEANFASDVWSVGCVLSALL
LGRLAFEARTGRQLMEHIYRGVGSYDNVWKLGQFLPYYPLCKPQRASGYA
PRTHKHVRELLAVARGKKKLPISDEAAALLPALLHLNPMERPSARECLEV
APYFQIFKKPLPGTLISGMGIGAGEGSRARAALLQEAKDAWIQITAVVPA
LLPGMSPRPFQGWVEEGSEAAGEGGEARNGGGTRAPGWKKDPEALANLFT
FSSGAPPDSTGRKEGKTKAVFTSSSSGTDSRGENGRSLPSSLMSSFPSSA
PGARSSQPSSLPPEGDDVDMEISSEDEENYRSKAAHRADEERRDGGKTQA
GGDRPSSSRIVVKEDGESEWSAVCCRILISERTQTAWRVSTVIFEKNLMT
NFTGGGREIDEEDTNLGSKPNFPCISGRYSKEKNMKHST

mRNA from alignment at KK037255.1:92683..94616+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9665 ID=rna9665|Name=rna9665|organism=Nannochloropsis gaditana|type=mRNA|length=1934bp|location=Sequence derived from alignment at KK037255.1:92683..94616+ (Nannochloropsis gaditana)
ATGAACCAGATatacgtggacgaggagggacgcCTTCGCTTGGGCGGGTT
TGAAGAAGCCACGCTCTACcatgcgggggggggcggagggaccgggggag
agggaggaagcgaaggagggcgggggaaagggaaaaggaaagaggtagAC
TTGGACGTGGGCCGCCGCAATTTGGAAGAagtgtgggaggaaggaaaacg
gcGGCGGAAGAATTTAACGGCCCCGGAGGTCCTcttgggaggagaagcga
acTTTGCCAGCGACGTCTGGTCGGTAGGGTGCGtgctctccgccctcctc
ctgggccgcCTCGCGTTCGAAGCCCGGACGGGGCGGCAGTTGATGGAACA
CATTTACCGGGGCGTGGGCTCCTACGACAATGTCTGGAAGCTGGGGCAAT
TCTTGCCGTACTACCCCCTCTGTAAACCACAACGGGCCTCCGGGTACGCG
CCCCGCACGCACAAACATGTCCGCGAATTGCTCGCAGTGGcccgggggaa
gaagaaattgcCAATTTCCGATGAGGCAGCAGCCTTGCTCCCAGCCCTCT
TGCATCTGAACCCGATGGAACGACCGAGCGCACGGGAGTGCCTGGAGGTG
GCCCCGTACtttcaaattttcaaaaaACCGTTGCCTGGGACCCTTATCTC
CGGGATGGGAAtcggagcgggagaagggagccGGGCGCGCGCGGCGTTGC
tgcaggaggcgaaggacgcgTGGATCCAGATCACGGCGGtcgtccctgcc
ctcctccccggcatGTCACCCCGGCCCTTTCAAggatgggtggaggaagg
gagcgaggctgcgggggagggtggagaagCCCGGAATGGCGGCGGGACTA
GGGCCCCAGGCTGGAAAAAGGATCCGGAGGCACTGGCAAACCTTTTCACC
TTCTCATCCGGCGCCCCTCCCGACTCCactgggagaaaggagggcaaaac
CAAGGCCGTTTTtacctcctcatcttccggCACGGACTCTCGAGGTGAAA
Acggtcgctccctcccttcgtccctcatgtcctccttcccttcctccgcc
cctggCGCCCGCAGCAGCCAGCCTTcgtcccttccgcccgagGGGGACGA
CGTGGACATGGAGATCTCgtcggaggacgaggagaattATCGTTCGAAAG
CGGCGCATCGTGCCGACGAAGAGCGGCGGGATGGTGGGAAAACACAGGCA
GGGGGAGATaggccctcttcctctcgcattgtcgtgaaggaggacggaga
gagcGAGTGGAgtagaaagagggagggaaggagggagggagggagggagg
gagggagggagggagggagggtgagtgAGCGATCGAGGTCCAGGGgtcgg
gagagagagagggagcgacgcCATGGAGATAGGGAGGACAGACACCGGCG
TGGCAGCAGGAGCCGAAgtcgagagaggaggagggtgggagggggtggac
gggacgggggagacaaggaaggggagaggggagagggtgtcggtgggcgg
agggagggagggcgggagaagggggagaggggggagagaggagaaaaaag
aggaagatcTGAGCGGAGGTCGCGGTcccgagggcgggatggaagggaaa
gggagagggaaagagagcgacGCCGATggtgagagaaaggagaagagagc
cTGCGGAAGTTGAgtaggagggagaaatggaaatGAAGGTAAAGGCGTTG
TGACCCACACATGTCTTGAGCGAAGGCGCCGTTTGCTGTCGCATCCTCAT
CAGCGAGCGGACACAAACGGCATGGAGAGTCTCTACTGTGATTTTTGAAA
AGAATTTGATGACGAATTTCacaggaggtggacgtgaaATTGACGAAGAA
GATACAAATCTAGGGTCGAAGCCGAACTTTCCTTGCATATCTGGTAGGTA
TAGtaaagaaaaaaatatgaAGCACAGCACGTAA

Coding sequence (CDS) from alignment at KK037255.1:92683..94616+

>rna9665 ID=rna9665|Name=rna9665|organism=Nannochloropsis gaditana|type=CDS|length=2940bp|location=Sequence derived from alignment at KK037255.1:92683..94616+ (Nannochloropsis gaditana)
ATGAACCAGATatacgtggacgaggagggacgcCTTCGCTTGGGCGGGTT
TGAAGAAGCCACGCTCTACcatgcgggggggggcggagggaccgggggag
agggaggaagcgaaggagggcgggggaaagggaaaaggaaagaggtagAC
TTGGACGTGGGCCGCCGCAATTTGGAAGAagtgtgggaggaaggaaaacg
gcGGCGGAAGAATTTAACGGCCCCGGAGGTCCTcttgggaggagaagcga
acTTTGCCAGCGACGTCTGGTCGGTAGGGTGCGtgctctccgccctcctc
ctgggccgcCTCGCGTTCGAAGCCCGGACGGGGCGGCAGTTGATGGAACA
CATTTACCGGGGCGTGGGCTCCTACGACAATGTCTGGAAGCTGGGGCAAT
TCTTGCCGTACTACCCCCTCTGTAAACCACAACGGGCCTCCGGGTACGCG
CCCCGCACGCACAAACATGTCCGCGAATTGCTCGCAGTGGcccgggggaa
gaagaaattgcCAATTTCCGATGAGGCAGCAGCCTTGCTCCCAGCCCTCT
TGCATCTGAACCCGATGGAACGACCGAGCGCACGGGAGTGCCTGGAGGTG
GCCCCGTACtttcaaattttcaaaaaACCGTTGCCTGGGACCCTTATCTC
CGGGATGGGAAtcggagcgggagaagggagccGGGCGCGCGCGGCGTTGC
tgcaggaggcgaaggacgcgTGGATCCAGATCACGGCGGtcgtccctgcc
ctcctccccggcatGTCACCCCGGCCCTTTCAAggatgggtggaggaagg
gagcgaggctgcgggggagggtggagaagCCCGGAATGGCGGCGGGACTA
GGGCCCCAGGCTGGAAAAAGGATCCGGAGGCACTGGCAAACCTTTTCACC
TTCTCATCCGGCGCCCCTCCCGACTCCactgggagaaaggagggcaaaac
CAAGGCCGTTTTtacctcctcatcttccggCACGGACTCTCGAGGTGAAA
Acggtcgctccctcccttcgtccctcatgtcctccttcccttcctccgcc
cctggCGCCCGCAGCAGCCAGCCTTcgtcccttccgcccgagGGGGACGA
CGTGGACATGGAGATCTCgtcggaggacgaggagaattATCGTTCGAAAG
CGGCGCATCGTGCCGACGAAGAGCGGCGGGATGGTGGGAAAACACAGGCA
GGGGGAGATaggccctcttcctctcgcattgtcgtgaaggaggacggaga
gagcGAGTGGAGCGCCGTTTGCTGTCGCATCCTCATCAGCGAGCGGACAC
AAACGGCATGGAGAGTCTCTACTGTGATTTTTGAAAAGAATTTGATGACG
AATTTCacaggaggtggacgtgaaATTGACGAAGAAGATACAAATCTAGG
GTCGAAGCCGAACTTTCCTTGCATATCTGGTAGGTATAGtaaagaaaaaa
atatgaAGCACAGCACGTAAATGAACCAGATatacgtggacgaggaggga
cgcCTTCGCTTGGGCGGGTTTGAAGAAGCCACGCTCTACcatgcgggggg
gggcggagggaccgggggagagggaggaagcgaaggagggcgggggaaag
ggaaaaggaaagaggtagACTTGGACGTGGGCCGCCGCAATTTGGAAGAa
gtgtgggaggaaggaaaacggcGGCGGAAGAATTTAACGGCCCCGGAGGT
CCTcttgggaggagaagcgaacTTTGCCAGCGACGTCTGGTCGGTAGGGT
GCGtgctctccgccctcctcctgggccgcCTCGCGTTCGAAGCCCGGACG
GGGCGGCAGTTGATGGAACACATTTACCGGGGCGTGGGCTCCTACGACAA
TGTCTGGAAGCTGGGGCAATTCTTGCCGTACTACCCCCTCTGTAAACCAC
AACGGGCCTCCGGGTACGCGCCCCGCACGCACAAACATGTCCGCGAATTG
CTCGCAGTGGcccgggggaagaagaaattgcCAATTTCCGATGAGGCAGC
AGCCTTGCTCCCAGCCCTCTTGCATCTGAACCCGATGGAACGACCGAGCG
CACGGGAGTGCCTGGAGGTGGCCCCGTACtttcaaattttcaaaaaACCG
TTGCCTGGGACCCTTATCTCCGGGATGGGAAtcggagcgggagaagggag
ccGGGCGCGCGCGGCGTTGCtgcaggaggcgaaggacgcgTGGATCCAGA
TCACGGCGGtcgtccctgccctcctccccggcatGTCACCCCGGCCCTTT
CAAggatgggtggaggaagggagcgaggctgcgggggagggtggagaagC
CCGGAATGGCGGCGGGACTAGGGCCCCAGGCTGGAAAAAGGATCCGGAGG
CACTGGCAAACCTTTTCACCTTCTCATCCGGCGCCCCTCCCGACTCCact
gggagaaaggagggcaaaacCAAGGCCGTTTTtacctcctcatcttccgg
CACGGACTCTCGAGGTGAAAAcggtcgctccctcccttcgtccctcatgt
cctccttcccttcctccgcccctggCGCCCGCAGCAGCCAGCCTTcgtcc
cttccgcccgagGGGGACGACGTGGACATGGAGATCTCgtcggaggacga
ggagaattATCGTTCGAAAGCGGCGCATCGTGCCGACGAAGAGCGGCGGG
ATGGTGGGAAAACACAGGCAGGGGGAGATaggccctcttcctctcgcatt
gtcgtgaaggaggacggagagagcGAGTGGAGCGCCGTTTGCTGTCGCAT
CCTCATCAGCGAGCGGACACAAACGGCATGGAGAGTCTCTACTGTGATTT
TTGAAAAGAATTTGATGACGAATTTCacaggaggtggacgtgaaATTGAC
GAAGAAGATACAAATCTAGGGTCGAAGCCGAACTTTCCTTGCATATCTGG
TAGGTATAGtaaagaaaaaaatatgaAGCACAGCACGTAA

Synonyms

Publications