rna9664, rna9664 (mRNA) Nannochloropsis gaditana

Overview
Namerna9664
Unique Namerna9664
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1460
Alignment locationKK037255.1:89349..91004 +

Link to JBrowse

Properties
Property NameValue
Producthistone-lysine n-methyltransferase setd2
Orig transcript idgnl|cribi|Naga_101246g2.10496.mrna
Orig protein idgnl|cribi|Naga_101246g2.10496
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:89349..91004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101246g2gene9384Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9664rna9664-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21040.1cds9633Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9664 ID=rna9664|Name=rna9664|organism=Nannochloropsis gaditana|type=mRNA|length=1460bp
GGAGGCGTGTGGTGCCTGAGTGAGGGATGAGCACAGATTGGAGCGGGTTA
TGCGTGAGAAATGCCATGCATGTGGCCTATATTGGTCCTTTGAGAGGTCT
GGGGGGCCGGTGAGGGGTTTGATGAGGAGGCAGCGAGGGGGAAGGGAGGC
GGCAGGCATGACACCCGTGACACCAACAGCCGCTCGCCGGGGTAGTGATG
CATGTAAAAGCAGCACATATGACGTGTGGTAGTGTGTCGTTGCTATCGGT
AGTGGGGAATGATCGTTGTCGAGGACTCTTGTCTGTTTGACCTTTCCTCT
TTCCCTCCCTTCCCCCTTGCATCCGGCTTCTGCTTCCCCTCCTCCGCTTC
ATTCCCCCACTTGTGGCAATTCACCGAGCACTTCATGTTTCTTCCTCCTT
CGCACCCGTAGACATCTACAGCACGCACAAGTGCCTTTACTTCCGGTTGT
GCCTGCTTGACACGTTGACAGAGCCCGACGCGGCCTTCCACCGCACCGAC
CTTCAACCTCCTCCCCCCTTGCTTCGGCTACTTGTTGATTTCCCCTATAT
AGTTGAAAATCAGAGCTCCTGGTTCTGTTTGTCTTTTTGATGCCTTGTGC
ATTCTCAAAGTGAATTCAAGGCCATTTCGAGTCAATGAAGGCCGTCCAAT
TTCTTCGTCTCTATCGCCGGAACAACCCCATGCAGAACTCTCCTACTCCT
TCCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCAAAGTCTCTTTTCAC
TCTCCTTTTCTTATCCTCCCTTCTGTCCTGTTCAACCGCCTTTGCCTCCT
CCTCTCCACCTACCTCGACCGCCCCGCCATCCTCCTCCTCCCCTTCATCC
TTTCCCCCCACCACGGTGTGCGTCACGGGGTGTAACGGCTACGTGGCCTC
CGAGCTGGTGAAACAGCTGCTTGAACGGGGATACAACGTGCATGGGACCG
TGCGCAAGCTCCACAAACTGACCGAGGAGGAACGAGAGGAAAAGTACGGG
CCATTGGCCAAATTGGGCAGAGGGAGGGGAGGAGGAGGTGGCGGAGGACA
AGGGGAAAGGGTGGGAAGACACAGGAAAGAAGACAGTCGGGGTTCATGCG
ACGAAGGAGTAGGGGATGGTGAAAAAGGAAGAGGGTGCCTTACCCTCTTC
GAAGCGGATTTGCGGCAACCGCATTCGTTCGACGCGGCGGTCCGAGGATG
CACGTATGTCTTCCACGTGGCATCTCCCGTGGTGTATGCCAGCGGAGCCG
ATCCTGAGACAGATTTGCTTGAACCAGCCCTGGAGGGGGTTCGGAATGTG
CTGAGGGCGATTCAAGATAGTCGGAGGGAGGAGGGAGGGAGGGAGGGAGG
GAAGGAGGGAGGGAGGGAGAGGTTCAAGCGGTTGATTTTGACATCGTCTA
CCGGAGCTGTCTATGGAGGGCCCACCGCAGTGCCGAAGAGTGCGCTTGAG
AAAGGGGGGG
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protein sequence of rna9664

>rna9664-protein ID=rna9664-protein|Name=rna9664|organism=Nannochloropsis gaditana|type=polypeptide|length=343bp
MGLRHPWSEAEVEGQEGIRDQDLGKASPRRQIMRKGMTTTTSFFPPSSFL
SPQTGMPVLYGGRQPGQETAPWHLETQFVDRNVYVNRKEKPDPRGDDLME
CECRYQAAVAQARKEGGGEGGGEGGGEDGIYCLDERCLNRSMLLECVRCG
KGCGNQRLKKGWWAKTEVQASGGKGWGLYLGEDIRAGALVAEYVGEVIHA
KELGLRKKQRKRDRHLYFLALQSSEFIDATEKGGKARFVNHSCAPNCLAE
KWKVGGEWRMGFYAKTALSAGTELSIDYGWEAQHGRKKTKCLCGTALCRG
FIEKDDSLALAEEAVWAQLRGVVGTWRSARGGEGGEGEEGGEG
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mRNA from alignment at KK037255.1:89349..91004+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9664 ID=rna9664|Name=rna9664|organism=Nannochloropsis gaditana|type=mRNA|length=1656bp|location=Sequence derived from alignment at KK037255.1:89349..91004+ (Nannochloropsis gaditana)
TGGCATTTCTCACGCATAACCCGCTCCAATCTGTGCTCATCCCTCACTCA
GGCACCACACGCCTCCTTTTGGCGGCACTGAATCCCCTTAAAAGTGACTT
GGCGGTCGAGTTCgctgaagaagagggagcggacgcATGATACCAATTCC
ATGCGCAGATCAATTTGAATGTCTGTTTGTTGCGAAGGGTACAGACTTCT
CGCTGCCTTCGCCCGGCTTACGTGGCCTGCTCTTCATTGAGATGGCGGTC
GAGATTCTGACCTTTGCGCGGTACTTCTTTTTTGGTGTCTTGATTGTCGC
CATGGTTGAAGGCGTTAGGGCGAGGTAGCGGGAAAGGCTTATGCATTGCC
CCCCTAGCCAAGGGTGAGCCCATTTCCCTGCATGCAGAGGATGGTTTTCA
CACTCTAGCCATCCAAAGCCTTGTTACCTTCTTGTTGCTGCCCATGTCCT
GAAGACTCTGCCGCCCGTGGCGGCTTTGCTTGTTTTGTGCCAGCAAGGGA
ACGACCCGAGGCGCCCGCCAGCCTGTAAATAGGAGAGACATGACCATACT
GCTCCACTGATTGGTTCCACGCTGTTCAAAAATGCGTAAGGGTCATTTTG
AAAAGGTGCCCGTGGGTTGTGTGCCTTGATGGGGCTGAGGCACCCGTGGT
CAGAGGCGGAGGTcgaaggacaggaggggataCGCGACCAGGACCTTGGC
AAGGCCTCACCGCGACGACAAAtcatgaggaagggaatgacgACGAcgac
ctccttcttccctccctcttcctttctttccccccagACAGGTATGCCGG
TCCTCTACGGCGGGCGCCAGCCCGGGCAGGAGACGGCCCCCTGGCACCTG
GAAACCCAGTTCGTCGACCGCAACGTGTACGTGAaccggaaggagaagcc
ggATCCTCGGGGGGACGATTTAATGGAGTGCGAATGCCGGTACCAGGCCG
CGGTGGCGCAGGCccggaaggaaggcgggggagaaggcgggggggagggc
gggggggaggacgggatctACTGCCTGGACGAGCGGTGTTTGAATCGCAG
CATGCTCCTGGAATGTGTCCGTTGCGGCAAAGGATGCGGGAACCAGCGGC
TGAAGAAAGGATGGTGGGCCAAGACGGAGGTCCAGGCGAGCGGCGGCAAA
GGCTGGGGCCTTTACTTGGGCGAAGACATCCGGGCGGGGGCCCTGGTCGC
CGAATATGTCGGGGAGGTCATCCATGCCAAGGAGCTCGGGCTCCGGAAAA
AACAACGCAAGCGGGACCGACATTTGTATTTCTTGGCCCTGCAGTCCTCG
GAATTCATCGACGccacggagaaaggggggaaggcccgTTTTGTCAACCA
CAGTTGTGCACCGAACTGCTTGGCGGAGAAGTGGAAAGTCGGGGGCGAAT
GGCGTATGGGCTTCTACGCCAAGACGGCGCTGTCGGCGGGCACGGAGTTG
TCCATCGACTACGGGTGGGAGGCACAGCATGGGCGGAAGAAGACCAAGTG
CCTGTGCGGGACGGCCCTATGTCGAGGTTTCATCGAGAAGGACGACTCCC
TGGcgctggcagaggaggcggtaTGGGCCCAACTGCgaggggtggtgggg
acgtggcggtcggcccgagggggggagggaggggagggggaggaaggggg
ggaggg
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Coding sequence (CDS) from alignment at KK037255.1:89349..91004+

>rna9664 ID=rna9664|Name=rna9664|organism=Nannochloropsis gaditana|type=CDS|length=1028bp|location=Sequence derived from alignment at KK037255.1:89349..91004+ (Nannochloropsis gaditana)
ATGGGGCTGAGGCACCCGTGGTCAGAGGCGGAGGTcgaaggacaggaggg
gataCGCGACCAGGACCTTGGCAAGGCCTCACCGCGACGACAAAtcatga
ggaagggaatgacgACGAcgacctccttcttccctccctcttcctttctt
tccccccagACAGGTATGCCGGTCCTCTACGGCGGGCGCCAGCCCGGGCA
GGAGACGGCCCCCTGGCACCTGGAAACCCAGTTCGTCGACCGCAACGTGT
ACGTGAaccggaaggagaagccggATCCTCGGGGGGACGATTTAATGGAG
TGCGAATGCCGGTACCAGGCCGCGGTGGCGCAGGCccggaaggaaggcgg
gggagaaggcgggggggagggcgggggggaggacgggatctACTGCCTGG
ACGAGCGGTGTTTGAATCGCAGCATGCTCCTGGAATGTGTCCGTTGCGGC
AAAGGATGCGGGAACCAGCGGCTGAAGAAAGGATGGTGGGCCAAGACGGA
GGTCCAGGCGAGCGGCGGCAAAGGCTGGGGCCTTTACTTGGGCGAAGACA
TCCGGGCGGGGGCCCTGGTCGCCGAATATGTCGGGGAGGTCATCCATGCC
AAGGAGCTCGGGCTCCGGAAAAAACAACGCAAGCGGGACCGACATTTGTA
TTTCTTGGCCCTGCAGTCCTCGGAATTCATCGACGccacggagaaagggg
ggaaggcccgTTTTGTCAACCACAGTTGTGCACCGAACTGCTTGGCGGAG
AAGTGGAAAGTCGGGGGCGAATGGCGTATGGGCTTCTACGCCAAGACGGC
GCTGTCGGCGGGCACGGAGTTGTCCATCGACTACGGGTGGGAGGCACAGC
ATGGGCGGAAGAAGACCAAGTGCCTGTGCGGGACGGCCCTATGTCGAGGT
TTCATCGAGAAGGACGACTCCCTGGcgctggcagaggaggcggtaTGGGC
CCAACTGCgaggggtggtggggacgtggcggtcggcccgagggggggagg
gaggggagggggaggaagggggggaggg
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Synonyms
Publications