EWM21040.1, cds9633 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21040.1 vs. NCBI_GenBank
Match: gi|585101052|gb|EWM21040.1| (histone-lysine n-methyltransferase setd2, partial [Nannochloropsis gaditana]) HSP 1 Score: 697.967 bits (1800), Expect = 0.000e+0 Identity = 343/343 (100.00%), Postives = 343/343 (100.00%), Query Frame = 0
Query: 1 MGLRHPWSEAEVEGQEGIRDQDLGKASPRRQIMRKGMTTTTSFFPPSSFLSPQTGMPVLYGGRQPGQETAPWHLETQFVDRNVYVNRKEKPDPRGDDLMECECRYQAAVAQARKEGGGEGGGEGGGEDGIYCLDERCLNRSMLLECVRCGKGCGNQRLKKGWWAKTEVQASGGKGWGLYLGEDIRAGALVAEYVGEVIHAKELGLRKKQRKRDRHLYFLALQSSEFIDATEKGGKARFVNHSCAPNCLAEKWKVGGEWRMGFYAKTALSAGTELSIDYGWEAQHGRKKTKCLCGTALCRGFIEKDDSLALAEEAVWAQLRGVVGTWRSARGGEGGEGEEGGEG 343
MGLRHPWSEAEVEGQEGIRDQDLGKASPRRQIMRKGMTTTTSFFPPSSFLSPQTGMPVLYGGRQPGQETAPWHLETQFVDRNVYVNRKEKPDPRGDDLMECECRYQAAVAQARKEGGGEGGGEGGGEDGIYCLDERCLNRSMLLECVRCGKGCGNQRLKKGWWAKTEVQASGGKGWGLYLGEDIRAGALVAEYVGEVIHAKELGLRKKQRKRDRHLYFLALQSSEFIDATEKGGKARFVNHSCAPNCLAEKWKVGGEWRMGFYAKTALSAGTELSIDYGWEAQHGRKKTKCLCGTALCRGFIEKDDSLALAEEAVWAQLRGVVGTWRSARGGEGGEGEEGGEG
Sbjct: 1 MGLRHPWSEAEVEGQEGIRDQDLGKASPRRQIMRKGMTTTTSFFPPSSFLSPQTGMPVLYGGRQPGQETAPWHLETQFVDRNVYVNRKEKPDPRGDDLMECECRYQAAVAQARKEGGGEGGGEGGGEDGIYCLDERCLNRSMLLECVRCGKGCGNQRLKKGWWAKTEVQASGGKGWGLYLGEDIRAGALVAEYVGEVIHAKELGLRKKQRKRDRHLYFLALQSSEFIDATEKGGKARFVNHSCAPNCLAEKWKVGGEWRMGFYAKTALSAGTELSIDYGWEAQHGRKKTKCLCGTALCRGFIEKDDSLALAEEAVWAQLRGVVGTWRSARGGEGGEGEEGGEG 343
BLAST of EWM21040.1 vs. NCBI_GenBank
Match: gi|553192083|ref|XP_005855510.1| (histone-lysine N-methyltransferase SETD2, partial [Nannochloropsis gaditana CCMP526] >gi|422293549|gb|EKU20849.1| histone-lysine N-methyltransferase SETD2, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 412.92 bits (1060), Expect = 1.939e-143 Identity = 211/259 (81.47%), Postives = 211/259 (81.47%), Query Frame = 0
Query: 56 MPVLYGGRQPGQETAPWHLETQFVDRNVYVNRKEKPDPRGDDLMECECRYQAAVAQARKEGGGEGGGEGGGEDGIYCLDERCLNRSMLLECVRCGKGCGNQRLKKGWWAKTEVQASGGKGWGLYLGEDIRAGALVAEYVGEVIHAKELGLRKKQRKRDRHLYFLALQSSEFIDATEKGGKARFVNHSCAPNCLAEKWKVGGEWRMGFYAKTALSAGTELSIDYGWEAQHGRKKTKCLCGTALCRGFIEKDDSLALAEEA 314
MPVLYGGRQPGQETAPWHLETQFVDRNVYVNRKEKPDPRGDDLMECECRYQAA RLKKGWWAKTEVQASGGKGWGLYLGEDIRAGALVAEYVGEVIHAKELGLRKKQRKRDRHLYFLALQSSEFIDATEKGGKARFVNHSCAPNCLAEKWKVGGEWRMGFYAKTALSAGTELSIDYGWEAQHGRKKTKCLCGTALCRGFIEKDDSLALAEEA
Sbjct: 1 MPVLYGGRQPGQETAPWHLETQFVDRNVYVNRKEKPDPRGDDLMECECRYQAA------------------------------------------------RLKKGWWAKTEVQASGGKGWGLYLGEDIRAGALVAEYVGEVIHAKELGLRKKQRKRDRHLYFLALQSSEFIDATEKGGKARFVNHSCAPNCLAEKWKVGGEWRMGFYAKTALSAGTELSIDYGWEAQHGRKKTKCLCGTALCRGFIEKDDSLALAEEA 211
BLAST of EWM21040.1 vs. NCBI_GenBank
Match: gi|1009581144|ref|XP_015921888.1| (histone-lysine N-methyltransferase SETD2-like isoform X1 [Parasteatoda tepidariorum] >gi|1009581147|ref|XP_015921889.1| histone-lysine N-methyltransferase SETD2-like isoform X1 [Parasteatoda tepidariorum] >gi|1009581149|ref|XP_015921890.1| histone-lysine N-methyltransferase SETD2-like isoform X1 [Parasteatoda tepidariorum]) HSP 1 Score: 187.578 bits (475), Expect = 2.276e-49 Identity = 97/231 (41.99%), Postives = 136/231 (58.87%), Query Frame = 0
Query: 78 FVDRNVYVNRKEKPDPRGD-DLMECECRYQAAVAQARKEGGGEGGGEGGGEDGIYCLDERCLNRSMLLEC---VRCGKGCGNQRLKKGWWAKTEVQASGGKGWGLYLGEDIRAGALVAEYVGEVIHAKELGLRKKQ--RKRDRHLYFLALQSSEFIDATEKGGKARFVNHSCAPNCLAEKWKVGGEWRMGFYAKTALSAGTELSIDYGWEAQHGRKKTKCLCGTALCRGFI 302
+++ NVY+ +++ R + M C+C + Q K G C DE CLNR +++EC C + C N+R +K +AK E + KGWGL L ED+ G V EYVGEVI +E R KQ R++ H YF+AL+S E +DAT KG +RF+NHSC PNC+ +KW V GE R+GF+AK L AG EL+ DY ++ ++GR+ KC CGT +C G+I
Sbjct: 130 YLEENVYLFERKRSKGRKEARRMLCDCSLTEEMRQEGKLG---------------CQDE-CLNRLLMIECGSRCSCKEACSNKRFQKRLYAKVEPFKTDKKGWGLKLLEDVPIGNFVIEYVGEVISTQEFKQRVKQYAREKSNHYYFMALKSDEILDATNKGNLSRFMNHSCDPNCVTQKWTVNGELRIGFFAKRDLKAGEELTFDYQFQ-RYGREAQKCHCGTEICSGYI 343
BLAST of EWM21040.1 vs. NCBI_GenBank
Match: gi|1009581152|ref|XP_015921891.1| (histone-lysine N-methyltransferase SETD2-like isoform X2 [Parasteatoda tepidariorum]) HSP 1 Score: 187.578 bits (475), Expect = 2.827e-49 Identity = 97/231 (41.99%), Postives = 136/231 (58.87%), Query Frame = 0
Query: 78 FVDRNVYVNRKEKPDPRGD-DLMECECRYQAAVAQARKEGGGEGGGEGGGEDGIYCLDERCLNRSMLLEC---VRCGKGCGNQRLKKGWWAKTEVQASGGKGWGLYLGEDIRAGALVAEYVGEVIHAKELGLRKKQ--RKRDRHLYFLALQSSEFIDATEKGGKARFVNHSCAPNCLAEKWKVGGEWRMGFYAKTALSAGTELSIDYGWEAQHGRKKTKCLCGTALCRGFI 302
+++ NVY+ +++ R + M C+C + Q K G C DE CLNR +++EC C + C N+R +K +AK E + KGWGL L ED+ G V EYVGEVI +E R KQ R++ H YF+AL+S E +DAT KG +RF+NHSC PNC+ +KW V GE R+GF+AK L AG EL+ DY ++ ++GR+ KC CGT +C G+I
Sbjct: 69 YLEENVYLFERKRSKGRKEARRMLCDCSLTEEMRQEGKLG---------------CQDE-CLNRLLMIECGSRCSCKEACSNKRFQKRLYAKVEPFKTDKKGWGLKLLEDVPIGNFVIEYVGEVISTQEFKQRVKQYAREKSNHYYFMALKSDEILDATNKGNLSRFMNHSCDPNCVTQKWTVNGELRIGFFAKRDLKAGEELTFDYQFQ-RYGREAQKCHCGTEICSGYI 282
BLAST of EWM21040.1 vs. NCBI_GenBank
Match: gi|241753587|ref|XP_002401135.1| (huntingtin interacting protein, putative [Ixodes scapularis] >gi|215508354|gb|EEC17808.1| huntingtin interacting protein, putative [Ixodes scapularis]) HSP 1 Score: 179.489 bits (454), Expect = 1.499e-46 Identity = 90/206 (43.69%), Postives = 127/206 (61.65%), Query Frame = 0
Query: 129 GIYCLDERCLNRSMLLEC-VRC--GKGCGNQRLKKGWWAKTEVQASGGKGWGLYLGEDIRAGALVAEYVGEVIHAKELGLRKKQRKRD--RHLYFLALQSSEFIDATEKGGKARFVNHSCAPNCLAEKWKVGGEWRMGFYAKTALSAGTELSIDYGWEAQHGRKKTKCLCGTALCRGFIEKDDSLALAEEAVWAQLRGVVGTWRSA 329
GI +E CLNR +++EC RC G C N+R +K + K E + KGWGL E + +GA V EYVGEV+ ++ R KQ RD +H YF+AL+S E IDAT+KG +RF+NHSC PNC +KW V GE R+GF+ + L AG EL+ DY ++ ++G++ KC C ++ CRGFI +D+ ++L A R + R A
Sbjct: 580 GIMGCEEDCLNRLLMIECGSRCPNGDSCSNRRFQKKSYIKVEKFLTEKKGWGLRTVETLASGAFVMEYVGEVLTPEDFRKRVKQYARDNHQHYYFMALRSDEIIDATQKGNVSRFINHSCDPNCETQKWTVNGELRIGFFTRRPLRAGEELTFDYQFQ-RYGKEAQKCYCESSKCRGFIGEDNKMSLKSGRALAPKRVSNSSSRRA 784
BLAST of EWM21040.1 vs. NCBI_GenBank
Match: gi|926616412|ref|XP_013773324.1| (PREDICTED: histone-lysine N-methyltransferase SETD2-like, partial [Limulus polyphemus]) HSP 1 Score: 177.563 bits (449), Expect = 5.908e-46 Identity = 93/250 (37.20%), Postives = 146/250 (58.40%), Query Frame = 0
Query: 67 QETAPWHLETQFVDRNVYV-NRKEKPDPRGDDLMECECRYQAAVAQARKEGGGEGGGEGGGEDGIYCLDERCLNRSMLLEC-VRC--GKGCGNQRLKKGWWAKTEVQASGGKGWGLYLGEDIRAGALVAEYVGEVIHAKELGLRKKQRKRDR--HLYFLALQSSEFIDATEKGGKARFVNHSCAPNCLAEKWKVGGEWRMGFYAKTALSAGTELSIDYGWEAQHGRKKTKCLCGTALCRGFIEKDDSLAL 310
+E P++ + ++ N+Y+ R+ + M C+C ++ + K+ G G GE CLNR +++EC RC G+ C N+R ++ + KTE + KGWGL ED+ +G+ V EYVGEV++ ++ R KQ D+ H YF+AL++ E IDAT +G +RF+NHSC PNC +KW V GE R+GF+ + A+ A EL+ DY ++ ++G++ KC CG CRGFI +D ++L
Sbjct: 624 KEKPPYY---EQIEENIYLFERRRSKSKKEVRRMICDC----SLTKEEKQKGAVGCGED------------CLNRLLMIECGSRCPLGESCTNKRFQQKRYIKTEPLKTEMKGWGLRSVEDVPSGSFVMEYVGEVLNPQQFKQRVKQYASDKNTHYYFMALKNDEIIDATTRGNISRFINHSCDPNCETQKWTVNGELRIGFFTRRAVKANEELTFDYQFQ-RYGKEAQKCFCGADQCRGFIGEDKQISL 853
BLAST of EWM21040.1 vs. NCBI_GenBank
Match: gi|953486245|emb|CEG49576.1| (histone-lysine n-methyltransferase ashh2-like isoform x1 [Plasmopara halstedii]) HSP 1 Score: 169.474 bits (428), Expect = 1.915e-45 Identity = 93/259 (35.91%), Postives = 141/259 (54.44%), Query Frame = 0
Query: 75 ETQFVDRNVYVNRKEKPDPRGDDLMECECRYQAAVAQARKEGGGEGGGEGGGEDGIYCLDERCLNRSMLLECV----RCGKGCGNQRLKKGWWAKTEVQASGGKGWGLYLGEDIRAGALVAEYVGEVIHAKELGLRKKQRKRDRHLYFLALQSSEFIDATEKGGKARFVNHSCAPNCLAEKWKVGGEWRMGFYAKTALSAGTELSIDYGWEAQHGRKKTKCLCGTALCRGFIEKDDSLALAEEAVW-AQLRGVVGTWRS 328
E Q ++ NVYV RKE+ P D++ C C E+ + CLD+ C NR+ L+EC+ + G C N R+++G T++ G KG G L EDI+AG+ VAEY+GE++ +E +R+ ++H Y + L E IDAT GG ARF+NHSC PNC EKW+V GE R +A+ + AG EL+ DY +++ + T+CLCG CR I ++ ++ + + A + +GT +S
Sbjct: 50 EIQIIEHNVYVQRKERTLPE-DEISVCSC------------------VPPTNENEMSCLDD-CHNRAALVECIPGFCKSGDRCDNMRIQRGVMPLTQLIDCGRKGLGTKLLEDIKAGSFVAEYMGEIVTEQEYYMRRVLYHNEKHRYMMVLSGGEVIDATRMGGWARFINHSCDPNCRVEKWEVNGEERCAIFARRDIIAGEELTFDYKFQSFSKTEITECLCGAPNCRKVIGMNNQVSKPSKMLQKADMAAPIGTKKS 288
BLAST of EWM21040.1 vs. NCBI_GenBank
Match: gi|545367535|ref|XP_005648582.1| (SET domain-containing protein, partial [Coccomyxa subellipsoidea C-169] >gi|384250559|gb|EIE24038.1| SET domain-containing protein, partial [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 166.007 bits (419), Expect = 2.439e-45 Identity = 93/232 (40.09%), Postives = 125/232 (53.88%), Query Frame = 0
Query: 77 QFVDRNVYVNRKEKPDPRGDDLMECECRYQAAVAQARKEGGGEGGGEGGGEDGIYCLDERCLNRSMLLECVR----CGKGCGNQRLKKGWWAKTEVQASGGKGWGLYLGEDIRAGALVAEYVGEVIHAKELGLRKK--QRKRDRHLYFLALQSSEFIDATEKGGKARFVNHSCAPNCLAEKWKVGGEWRMGFYAKTALSAGTELSIDYGWEAQHGRKKTKCLCGTALCRGFI 302
Q + N+Y +R K DD+M C CR GG G G D CLNR + +ECV CG+ C NQ+ K +AK E + +G KG+GL+ +D+ AG + EY+GEV+ +E RK Q RH YF+ + + E IDA KG RF+NHSC PNC +KW V GE +G YA + AG EL+ DY +E ++G K +CLC +CRGFI
Sbjct: 12 QLIRENIYTHRAPKVQDE-DDVMLCHCRLP------------NDGGPGCGPD--------CLNRMLNMECVPGYCPCGERCSNQQFSKRQYAKLEKRRAGAKGFGLFATQDLVAGQFIVEYIGEVLEEEEYLRRKDYYQESGQRHYYFMNIGNGEVIDAARKGALGRFINHSCNPNCETQKWVVRGELAIGLYALKDIPAGVELTFDYNFE-RYGDKPMRCLCEAKVCRGFI 221
BLAST of EWM21040.1 vs. NCBI_GenBank
Match: gi|1096116160|pdb|5JJY|A (Chain A, Crystal Structure Of Setd2 Bound To Histone H3.3 K36m Peptide >gi|1096116162|pdb|5JLB|A Chain A, Crystal Structure Of Setd2 Bound To Histone H3.3 K36i Peptide >gi|1096116164|pdb|5JLE|A Chain A, Crystal Structure Of Setd2 Bound To Sah) HSP 1 Score: 165.236 bits (417), Expect = 3.309e-45 Identity = 99/283 (34.98%), Postives = 154/283 (54.42%), Query Frame = 0
Query: 41 TSFFPPSSFLSPQTGMPVLYGGRQP-------GQETAPWHLETQFVDRNVYVN-RKEKPDPRGDDLMECECRYQAAVAQARKEGGGEGGGEGGGEDGIYCLDERCLNRSMLLECV-RCGKG--CGNQRLKKGWWAKTEVQASGGKGWGLYLGEDIRAGALVAEYVGEVIHAKELGLRKKQ--RKRDRHLYFLALQSSEFIDATEKGGKARFVNHSCAPNCLAEKWKVGGEWRMGFYAKTALSAGTELSIDYGWEAQHGRKKTKCLCGTALCRGFIEKDDSLAL 310
TS P S+ + P V+ R P Q P + + ++ NVY+ RK+ R M+CEC + +A+ G GED CLNR +++EC RC G C N+R ++ A EV + KGWGL +D+ + V EY GEV+ KE R K+ R ++ H YF+AL++ E IDAT+KG +RF+NHSC PNC +KW V G+ R+GF+ + +G+EL+ DY ++ ++G++ KC CG+A CRG++ ++ +++
Sbjct: 4 TSVPPGSALVGPSC---VMDDFRDPQRWKECAKQGKMPCYFD--LIEENVYLTERKKNKSHRDIKRMQCECTPLSKDERAQ-------GEIACGED--------CLNRLLMIECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQ-RYGKEAQKCFCGSANCRGYLGGENRVSI 265
BLAST of EWM21040.1 vs. NCBI_GenBank
Match: gi|403072167|pdb|4FMU|A (Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set Domain- Containing Protein 2 Compound: Pr-Snf >gi|407944022|pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human Set Domain- Containing Protein 2 In Complex With S-Adenosyl-L-Homocysteine) HSP 1 Score: 164.851 bits (416), Expect = 3.544e-45 Identity = 99/283 (34.98%), Postives = 154/283 (54.42%), Query Frame = 0
Query: 41 TSFFPPSSFLSPQTGMPVLYGGRQP-------GQETAPWHLETQFVDRNVYVN-RKEKPDPRGDDLMECECRYQAAVAQARKEGGGEGGGEGGGEDGIYCLDERCLNRSMLLECV-RCGKG--CGNQRLKKGWWAKTEVQASGGKGWGLYLGEDIRAGALVAEYVGEVIHAKELGLRKKQ--RKRDRHLYFLALQSSEFIDATEKGGKARFVNHSCAPNCLAEKWKVGGEWRMGFYAKTALSAGTELSIDYGWEAQHGRKKTKCLCGTALCRGFIEKDDSLAL 310
TS P S+ + P V+ R P Q P + + ++ NVY+ RK+ R M+CEC + +A+ G GED CLNR +++EC RC G C N+R ++ A EV + KGWGL +D+ + V EY GEV+ KE R K+ R ++ H YF+AL++ E IDAT+KG +RF+NHSC PNC +KW V G+ R+GF+ + +G+EL+ DY ++ ++G++ KC CG+A CRG++ ++ +++
Sbjct: 3 TSVPPGSALVGPSC---VMDDFRDPQRWKECAKQGKMPCYFD--LIEENVYLTERKKNKSHRDIKRMQCECTPLSKDERAQ-------GEIACGED--------CLNRLLMIECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQ-RYGKEAQKCFCGSANCRGYLGGENRVSI 264 The following BLAST results are available for this feature:
BLAST of EWM21040.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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