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Properties
| Property Name | Value |
|---|
| Product | suppressor of variegation 3-9 |
| Orig transcript id | gnl|cribi|Naga_100221g6.4577.mrna |
| Orig protein id | gnl|cribi|Naga_100221g6.4577 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037255.1 | supercontig | KK037255.1:72214..74379 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9655 ID=rna9655|Name=rna9655|organism=Nannochloropsis gaditana|type=mRNA|length=2461bp
GAAAAAATAAGAACACATTGACCGTCCTAAGATCGAATGAGGACGGCGAC
TCTTCCTTCGTTGGGATACCTAAGCGCGGGGAGGTTCATTTCATGGATGA
ACATGGTACCAATGATGATAAATAGGTATTGAAAGATAAGAACTTGTTTT
GCTTGCGGTCGCGAAGCGTCTGTTTTGGACGTCTTGGTTATTTTCAGGAT
GCATGTTGAAGCATGGCGTCATCCGCCCTTGTGGCTATTAGAGAGGGTGT
ATACTTACGAATTCCGGCGTTACCAGTGAGCAGCAGTCATTTGATTGACT
GAACGAACAATAATCAAGGCCAATACTCGAATTGTTCGGGAGAAGAGGGG
TTTGTATTGATTGTTCACGTGCTAAATTATGATGTGCTTGTATCCGACAA
CCGAGAACAGTAAAGGTAGCTTTATGTAAGATCAAGAATTGTGGTCGCCA
TGAGTAACGGGAATGGCACTCACATCAGTAGCAGCTCCCCACATGGAAAG
AGGCGGCGTCCGGAGGACGAAGGAGAGGGAGGATGCGAGAAAAAAATTGC
AAACGCGCATCACCCTCATGGACAAGACGGTCCAGATTTCTCTCCTTCAC
GTACATCGACATCACTGCATCCCTTCAGCCCCTCCACCCTATCCTCAGTG
CCTATTATCTCCCAAAATTCGTCTTCATGGCGCCATTGCTCGTATTTCCG
CTTCGGCCGGTGCACCCGTCTGGGGCCCGCGCCCTATACATGCTCCTTCC
TTCATGAAGCGTGCCCCCATGGAATAGATTGCCTCGACTACCAGCATTGT
CGAAAAGGCCACCCACGTGCATGGGAAGACAAACGTGAATGGTCCAGACC
CTGTCGACGCCTCCGCTTGACGGGCCGGTGCCCTTACCAAGCAAAGGACG
GGAAGGACGAATGTAGATACCAGCATGTGATGTGCCAGGAAGGAAAAGAT
TGTCAGAATGGAAGCTGCCAGTGGGGACACCCGCGGGCATGGCGGTGCAA
AGGGTGTGAAAAATGCGGGGGGGGGCAAGAGGGGCAAGGCGTGGTCGGGG
CGGGAGTCTTGCTGTTGTCTCCTTCCCATTGCCCCGACGAGTTCGACCTC
GTCTTGGTGGCAGAGGAAGGGAGGAACGGGGTATCCGGGCGGGAATGGGG
CGAGATGGGCGGTCGGTCGGGCCCACACCCAGAGCCAGACAGTGAGGACA
GAGAGGCGATTGCGGCCGTGGCAGCCCGGGAGCTGGAGGAGGAGACGGCT
GGGACGGTAAGAGTGGCGCCTGTCAGGCTGGTTACTTGTCCTTTTGTCGA
CATAGGGATCTTTCACCGGTACCGGTGCTACGTGTTGGCGGTGGCCAAAG
AAGAAGCCAGCGTCGGGGTCTTTCAACGGGCCCGAAAAAAGCCCGGCTTG
CCCCGGGCGTGGCGAGAAACCTGCGACATGAAACGGTTTCCGTTGCAGCG
CGTGGTGGAGGAGATGGGGGCGAAGGGGAGAAGACGAAGGGATGGAGGGA
ACGAGGTAGTAGAAAGAAGGGAGGAGGAGGAAAAAGACAAACTGAAGAAG
ATGGACGAAGGGCAAGAGGAGGGGGAGGACGGGGAGGAGGACGGGGAGGA
GGAAGGGGAGGAGGAAGGGGTATTGCTGGGTGACTACATCTATAGCCACA
AAGGGAAGGCACATTTGCTTGCCAGCAGAGCGAAAGAGGTACTGACTGCG
GCGTTTCGTCAAGGAATGCTCGATTCTTACGTATAGTGCTTGTCTTTGGC
AAGGGTTGCCTTTTCCGCACATGCGCTCATGGTGGGGAGAAGGACAGTCG
TTCCGATCTGCCCGATCTATAGTCGGGGCAGGCCACCGTGGGACGGGTGA
TGATTCAGGTGCTTAGTTTTCGAATGCTTCTAAACTGAATTTCGTGTCTC
TCTCACTCTCAGTTTTCCACTCGAAAAGAGGGGGGGGGGGTCCCATTTGT
GAGCGCATTTCAGGTCTTGCGAAAGCTCGTATCATGCGACTGCCACAGCT
CTAGTGAAGGAAACTCTACAGGATGGAAAGCATCTGCAGTCAGCTATGCA
CGCGCGGCCGTCGACATCTCATCAAAATTATAGAGTTTTCAAGAGATAAG
TAATAATGCCAAGTCTCCGAACGATGTTGTATCCGTAAAATGGTTGTTCC
GAAACAAAAAAGGGGAGCAGTGTGCTCGATAAGGACGTCGTCTCGTTGAC
CACTTTATTTTCTAAAAATAAATAGAAATGTTGATGATCCACATCCATGT
AGAATTTGACAGTAGGGAAGGTCAGCTAATCATATCCATGATGATGGCAT
CCAAGTCATATTTCTCCTCTGATGAGCATGTTGACAGTGACGGACCGGCG
CCTGCCTTCTTTTTATGATTTGAGTCACGCCACCGTTACCGTAGAACAAG
GGGGAAACCATAAATGCGTAACACTGCGCACGCATTGAATCCTGAAAAAG
ATCATAATGGT back to topprotein sequence of rna9655 >rna9655-protein ID=rna9655-protein|Name=rna9655|organism=Nannochloropsis gaditana|type=polypeptide|length=504bp
MHTPLPCVPPPPSSGLPPLPLLPSTFRWVDSVVLPSGTHNRRLHRRGGRA
GSAGKGQTQGAEAAEGCGCDGESRNSAALSSPSSFPLVCCHDASCPCYRT
AHRIALGDAPLPGEHSGSNAGKASIESIPSPSTRPKSDQDQSKGDSTTAT
DTHTIDDEKGSNNIDATPDNNDVVRHRMPSNSSNPVAGQDADRPLSPTSS
PSSSTSSSFKFEFECSSSCRCLPDQCQLRPTQASARLPLSLGYLPKKGWG
VFFSPPPSCPPARPPSLPPHTFVAEYTGELISTVEARRRLAIYDEVSALS
SLPSSLPSSLPPSPGIGKRPSPPAGCTHAAEHVKHAQGHAQANAAPAEVP
ILGPCPSQEGDKEERRGGQVHAGPRPHYLLTLLEEGDDFYLRTSLDATRC
GNVSRFFNHSCDPNMHVVCVRNGGLLPRLCFFTQRRVHAGDELTFAYGER
EENHASKGGVKVESGARCGRSCAKGTILPQSQSGRPCWCGSEKCVGNLPY
QPGL back to topmRNA from alignment at KK037255.1:72214..74379+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9655 ID=rna9655|Name=rna9655|organism=Nannochloropsis gaditana|type=mRNA|length=2166bp|location=Sequence derived from alignment at KK037255.1:72214..74379+ (Nannochloropsis gaditana)
AATGAACCTCCCCGCGCTTAGGTATCCCAACGAAGGAAGAGTCGCCGTCC
TCATTCGATCTTAGGACGGTCAATGTGTTCttattttttcctccttgtac
TTTTCAGGTTTGGGTCCCACCAATGCATTTAAATGAGCCTCCTGTGCTCG
TTGAGCAGATCTAATTCGGGTCCCGCTCCACCTCTGTCATCCTGCATCCA
TGACCACCCGGAGGCACAGCAAGAAAGGCAGCGGCGAACGTGCTGCCAAG
AGCGGCCCGATGAAGTATAAAGACACCCCCAAAATCTCAAAAGATCGGAT
TAAACATGTGCAGCAGCAGTGTGTATCATTTTTAAATGCCCTGGAATTGG
GTCGTGTTGGACTCACCTGTCGCGCTTTGCATCTGGCAGCGACGGAATGC
TTACGGTacggggcggtggggacACTTGAAGGACAATGGGCACGACCCCC
GTCCCCATTCCTTTGAATCCGTCAAAAATCCATGTCTGACATCATTCCCT
CTCTTTAATTTTTTCTTCGTACCGCAATTCACAACCCTGGCCTGCCTGGA
TGCCCCCGGCGCTCTCTCTTTAGCTTGCTGCAAACCGACATTACACGCGG
CCAGTCGCCCATGCACACGCCGTTACCTTGcgtcccacccccaccttcct
cgggccttccaccccttcccctccttccgtccacCTTCCGATGGGTGGAT
TCCGTGGTTCTGCCGTCGGGAACACACAACCGGCGCCTGCAccgccgggg
ggggagggctgggagcgcggggaagggTCAGACGCAGGgggcggaagcgg
cggaggggtgTGGCTGCGATGGAGAGAGCAGGAACAGCGCAGCCCTGTCT
TCGCCCTCGTCTTTTCCCCTGGTCTGTTGCCATGATGCTTCCTGTCCCTG
TTACCGGACTGCCCACAGGATCGCCCTTGGCGacgccccccttcccggtg
AACACAGCGGCAGCAACGCTGGCAAGGCCAGCATCGAGAGTATTCCTAGT
CCCAGTACCAGGCCAAAGAGCGACCAGGACCAGAGCAAGGGTGACTCCAC
CACTGCCACCGATACGCACACCATCGACGACGAAAAAGGCAGCAACAACA
TCGACGCCACGCCCGACAACAATGACGTGGTCCGTCACCGCATgcccagc
aacagcagtAACCCCGTGGCAGGTCAAGATGCTGAccggcccctttcccc
cacaTCATCCCCATCTTCttcaacctcttcctccttcaaatttgaatttg
aatgctcttcctcctgccgtTGCCTACCCGACCAGTGCCAGCTTCGGCCC
ACCCAAGCGAGTGCTcgacttcctctctccctcggctATCTCCCCAAGAA
GGGTTGGggcgtctttttctccccgcctccgtcctgccctcccgcccgcc
ctccctccctccctcctcacaccTTCGTTGCCGAATATACCGGGGAGCTG
ATCAGCACCGTGGAGGCCCGTCGCCGTCTCGCGATCTACGACGAGGTAtc
cgccctttcttccctcccttcctccctcccttcctccctccctccctccc
cggggaTTGGAAagcgcccttcccccccggcaggGTGCACGCACGCCGCG
GAACATGTCAAACACGCGCAGGGCCACGCCCAGGCAAATGCGGCGCCGGC
AGAAGTCCCCATCCTGGGCCCATGCCCCTCGCAGGAaggggacaaagagg
aaagacggggaggacaagTGCACGCTGGCCCCCGTCCTCATTACCTGCTG
ACTCtcctggaggaaggcgacgaTTTCTACCTGCGCACCTCCCTGGACGC
CACGCGTTGTGGGAACGTCTCTCGTTTCTTCAACCACTCGTGCGACCCGA
ATATGCACGTGGTCTGTGTTCGGAACGGAGGCCTGCTCCCTCGCCTCTGT
TTTTTCACGCAACGGCGTGTGCATGCGGGCGACGAGCTGACGTTTGCgta
cggggagagggaggagaaccacgcttcgaagggaggagtcaaGGTTGAAA
GTGGAGCTCGCTGTGGCCGGTCATGTGCAAAGGGGACCATATTGCCCCAA
TCACAGTCGGGCAGGCCGTGCTGGTGTGGTTCGGAGAAGTGTGTGGGAAA
TTTGCCGTATCAACCAGGGCTGTAAATGTTGCCAAGGACATGTGTGTTTT
AAAGTAAAACACGTCG back to topCoding sequence (CDS) from alignment at KK037255.1:72214..74379+ >rna9655 ID=rna9655|Name=rna9655|organism=Nannochloropsis gaditana|type=CDS|length=1515bp|location=Sequence derived from alignment at KK037255.1:72214..74379+ (Nannochloropsis gaditana)
ATGCACACGCCGTTACCTTGcgtcccacccccaccttcctcgggccttcc
accccttcccctccttccgtccacCTTCCGATGGGTGGATTCCGTGGTTC
TGCCGTCGGGAACACACAACCGGCGCCTGCAccgccggggggggagggct
gggagcgcggggaagggTCAGACGCAGGgggcggaagcggcggaggggtg
TGGCTGCGATGGAGAGAGCAGGAACAGCGCAGCCCTGTCTTCGCCCTCGT
CTTTTCCCCTGGTCTGTTGCCATGATGCTTCCTGTCCCTGTTACCGGACT
GCCCACAGGATCGCCCTTGGCGacgccccccttcccggtgAACACAGCGG
CAGCAACGCTGGCAAGGCCAGCATCGAGAGTATTCCTAGTCCCAGTACCA
GGCCAAAGAGCGACCAGGACCAGAGCAAGGGTGACTCCACCACTGCCACC
GATACGCACACCATCGACGACGAAAAAGGCAGCAACAACATCGACGCCAC
GCCCGACAACAATGACGTGGTCCGTCACCGCATgcccagcaacagcagtA
ACCCCGTGGCAGGTCAAGATGCTGAccggcccctttcccccacaTCATCC
CCATCTTCttcaacctcttcctccttcaaatttgaatttgaatgctcttc
ctcctgccgtTGCCTACCCGACCAGTGCCAGCTTCGGCCCACCCAAGCGA
GTGCTcgacttcctctctccctcggctATCTCCCCAAGAAGGGTTGGggc
gtctttttctccccgcctccgtcctgccctcccgcccgccctccctccct
ccctcctcacaccTTCGTTGCCGAATATACCGGGGAGCTGATCAGCACCG
TGGAGGCCCGTCGCCGTCTCGCGATCTACGACGAGGTAtccgccctttct
tccctcccttcctccctcccttcctccctccctccctccccggggaTTGG
AAagcgcccttcccccccggcaggGTGCACGCACGCCGCGGAACATGTCA
AACACGCGCAGGGCCACGCCCAGGCAAATGCGGCGCCGGCAGAAGTCCCC
ATCCTGGGCCCATGCCCCTCGCAGGAaggggacaaagaggaaagacgggg
aggacaagTGCACGCTGGCCCCCGTCCTCATTACCTGCTGACTCtcctgg
aggaaggcgacgaTTTCTACCTGCGCACCTCCCTGGACGCCACGCGTTGT
GGGAACGTCTCTCGTTTCTTCAACCACTCGTGCGACCCGAATATGCACGT
GGTCTGTGTTCGGAACGGAGGCCTGCTCCCTCGCCTCTGTTTTTTCACGC
AACGGCGTGTGCATGCGGGCGACGAGCTGACGTTTGCgtacggggagagg
gaggagaaccacgcttcgaagggaggagtcaaGGTTGAAAGTGGAGCTCG
CTGTGGCCGGTCATGTGCAAAGGGGACCATATTGCCCCAATCACAGTCGG
GCAGGCCGTGCTGGTGTGGTTCGGAGAAGTGTGTGGGAAATTTGCCGTAT
CAACCAGGGCTGTAA back to top
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