EWM21053.1, cds9624 (CDS) Nannochloropsis gaditana

Overview
NameEWM21053.1
Unique Namecds9624
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:72824..74338 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21053.1
Productsuppressor of variegation 3-9
Orig transcript idgnl|cribi|Naga_100221g6.4577.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:72824..74338 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR003616Post-SET_dom
IPR001214SET_dom
Homology
BLAST of EWM21053.1 vs. NCBI_GenBank
Match: gi|585101070|gb|EWM21053.1| (suppressor of variegation 3-9 [Nannochloropsis gaditana])

HSP 1 Score: 1018.07 bits (2631), Expect = 0.000e+0
Identity = 504/504 (100.00%), Postives = 504/504 (100.00%), Query Frame = 0
Query:    1 MHTPLPCVPPPPSSGLPPLPLLPSTFRWVDSVVLPSGTHNRRLHRRGGRAGSAGKGQTQGAEAAEGCGCDGESRNSAALSSPSSFPLVCCHDASCPCYRTAHRIALGDAPLPGEHSGSNAGKASIESIPSPSTRPKSDQDQSKGDSTTATDTHTIDDEKGSNNIDATPDNNDVVRHRMPSNSSNPVAGQDADRPLSPTSSPSSSTSSSFKFEFECSSSCRCLPDQCQLRPTQASARLPLSLGYLPKKGWGVFFSPPPSCPPARPPSLPPHTFVAEYTGELISTVEARRRLAIYDEVSALSSLPSSLPSSLPPSPGIGKRPSPPAGCTHAAEHVKHAQGHAQANAAPAEVPILGPCPSQEGDKEERRGGQVHAGPRPHYLLTLLEEGDDFYLRTSLDATRCGNVSRFFNHSCDPNMHVVCVRNGGLLPRLCFFTQRRVHAGDELTFAYGEREENHASKGGVKVESGARCGRSCAKGTILPQSQSGRPCWCGSEKCVGNLPYQPGL 504
            MHTPLPCVPPPPSSGLPPLPLLPSTFRWVDSVVLPSGTHNRRLHRRGGRAGSAGKGQTQGAEAAEGCGCDGESRNSAALSSPSSFPLVCCHDASCPCYRTAHRIALGDAPLPGEHSGSNAGKASIESIPSPSTRPKSDQDQSKGDSTTATDTHTIDDEKGSNNIDATPDNNDVVRHRMPSNSSNPVAGQDADRPLSPTSSPSSSTSSSFKFEFECSSSCRCLPDQCQLRPTQASARLPLSLGYLPKKGWGVFFSPPPSCPPARPPSLPPHTFVAEYTGELISTVEARRRLAIYDEVSALSSLPSSLPSSLPPSPGIGKRPSPPAGCTHAAEHVKHAQGHAQANAAPAEVPILGPCPSQEGDKEERRGGQVHAGPRPHYLLTLLEEGDDFYLRTSLDATRCGNVSRFFNHSCDPNMHVVCVRNGGLLPRLCFFTQRRVHAGDELTFAYGEREENHASKGGVKVESGARCGRSCAKGTILPQSQSGRPCWCGSEKCVGNLPYQPGL
Sbjct:    1 MHTPLPCVPPPPSSGLPPLPLLPSTFRWVDSVVLPSGTHNRRLHRRGGRAGSAGKGQTQGAEAAEGCGCDGESRNSAALSSPSSFPLVCCHDASCPCYRTAHRIALGDAPLPGEHSGSNAGKASIESIPSPSTRPKSDQDQSKGDSTTATDTHTIDDEKGSNNIDATPDNNDVVRHRMPSNSSNPVAGQDADRPLSPTSSPSSSTSSSFKFEFECSSSCRCLPDQCQLRPTQASARLPLSLGYLPKKGWGVFFSPPPSCPPARPPSLPPHTFVAEYTGELISTVEARRRLAIYDEVSALSSLPSSLPSSLPPSPGIGKRPSPPAGCTHAAEHVKHAQGHAQANAAPAEVPILGPCPSQEGDKEERRGGQVHAGPRPHYLLTLLEEGDDFYLRTSLDATRCGNVSRFFNHSCDPNMHVVCVRNGGLLPRLCFFTQRRVHAGDELTFAYGEREENHASKGGVKVESGARCGRSCAKGTILPQSQSGRPCWCGSEKCVGNLPYQPGL 504          
BLAST of EWM21053.1 vs. NCBI_GenBank
Match: gi|470413560|ref|XP_004336591.1| (SET domain containing protein [Acanthamoeba castellanii str. Neff] >gi|440793393|gb|ELR14578.1| SET domain containing protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 90.5077 bits (223), Expect = 6.123e-17
Identity = 51/112 (45.54%), Postives = 61/112 (54.46%), Query Frame = 0
Query:  391 LRTSLDATRCGNVSRFFNHSCDPNMHVVCVRNGGLLPRLCFFTQRRVHAGDELTFAYGEREENHASKGGVKVESGARCGRSCAKGTILPQSQSGRPCWCGSEKCVGNLPYQP 502
            LRT++D TR GNVSRFFNHSCDPNM +  VR G L+PRL FF  R V AG+ELT+ YG     H S                   T    + + R C CG+  C G LP+ P
Sbjct:  159 LRTNIDGTRLGNVSRFFNHSCDPNMLLFLVRVGSLIPRLAFFVCRDVAAGEELTYDYG-----HGS-------------------TQAADAPATRQCHCGARHCRGVLPFDP 246          
BLAST of EWM21053.1 vs. NCBI_GenBank
Match: gi|695051687|ref|XP_009413878.1| (PREDICTED: histone-lysine N-methyltransferase SUVR3 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 88.1965 bits (217), Expect = 1.800e-15
Identity = 54/150 (36.00%), Postives = 76/150 (50.67%), Query Frame = 0
Query:  357 SQEGDKEERRGGQVHAGPRPHYLLTLLEE---GDDFYLRTSLDATRCGNVSRFFNHSCDP-NMHVVCVRNGG-LLPRLCFFTQRRVHAGDELTFAYGEREENHASKGGVKVESGARCGRSCAKGTILPQSQSGRPCWCGSEKCVGNLPYQ 501
            ++E  + +R   ++  G R H  L ++ E        LR ++DAT+ GN++RF NHSCD  N+  V VRN G LLPRLCFF  + V  G+ELTF+YG                            +   ++ G PC+CGS  CVG LP +
Sbjct:  222 TEEARRRQRTYDELACGGRLHPALLVVREHLPSGKACLRVNIDATKVGNIARFVNHSCDGGNLSTVLVRNSGSLLPRLCFFAAKDVVDGEELTFSYG----------------------------VADLTKQGLPCFCGSSCCVGRLPSE 343          
BLAST of EWM21053.1 vs. NCBI_GenBank
Match: gi|939280165|ref|XP_014260680.1| (PREDICTED: probable histone-lysine N-methyltransferase set-23 [Cimex lectularius])

HSP 1 Score: 85.1149 bits (209), Expect = 8.347e-15
Identity = 46/130 (35.38%), Postives = 65/130 (50.00%), Query Frame = 0
Query:  375 RPHYLLTLLEEGDDFYLRTSLDATRCGNVSRFFNHSCDPNMHVVCVRNGGLLPRLCFFTQRRVHAGDELTFAYGEREENHASKGGVKVESGARCGRSCAKGTILPQSQSGRPCWCGSEKCVGNLPYQPGL 504
            + +Y+LTL E  +D  + T +DA   GN+ R+ NHSCDPN  +V VR G  +PR+C F +R +  G+ELT+ Y  + EN +S                              C+C S+KC G LP   GL
Sbjct:  168 KNNYILTLREHCEDCIIDTCVDARLFGNIGRYLNHSCDPNCILVPVRTGNTIPRICIFAKRNIRKGEELTYHYNSQSENLSST----------------------------RCYCRSKKCAGFLPSSSGL 269          
BLAST of EWM21053.1 vs. NCBI_GenBank
Match: gi|908407843|ref|XP_013062772.1| (PREDICTED: histone-lysine N-methyltransferase SETMAR-like [Biomphalaria glabrata])

HSP 1 Score: 83.5741 bits (205), Expect = 3.311e-14
Identity = 51/158 (32.28%), Postives = 79/158 (50.00%), Query Frame = 0
Query:  360 GDKEERRGGQVHAGPRPHYLLTLLEEGDDFYLRTSLDATRCGNVSRFFNHSCDPNMHVVCVRNGGLLPRLCFFTQRRVHAGDELTFAYGEREENHASKGGVKVESGARCGRSCAKGT-ILP------------QSQSGRPCWCGSEKCVGNLPYQPGL 504
            G++ + R     +  + +YL+ + E   +  L T +D  + GN+ RF NHSCDPN+ +V VRN   +PRL  F  + + AG+ELTF       N++    V + S     +SC + T +LP            +    +PC+CGS  C G +PY   L
Sbjct:  152 GEEAKHRMAATESSNKDNYLIVVREYWKEQVLLTYVDPQKVGNIGRFINHSCDPNLVMVPVRNNHSVPRLALFASKDIIAGEELTF-------NYSGVSRVSLPS-----KSCIESTKVLPHLFEITDSKVDIRQVKRKPCYCGSNLCKGFMPYDKDL 297          
BLAST of EWM21053.1 vs. NCBI_GenBank
Match: gi|551601783|ref|XP_005782508.1| (histone-lysine N-methyltransferase, partial [Emiliania huxleyi CCMP1516] >gi|485635397|gb|EOD30079.1| histone-lysine N-methyltransferase, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 79.337 bits (194), Expect = 4.320e-14
Identity = 46/127 (36.22%), Postives = 59/127 (46.46%), Query Frame = 0
Query:  376 PHYLLTLLEEGDDFYLRTSLDATRCGNVSRFFNHSCDPNMHVVCVRNGGLLPRLCFFTQRRVHAGDELTFAYGEREENHASKGGVKVESGARCGRSCAKGTILPQSQSGRPCWCGSEKCVGNLPYQP 502
            P+Y + L E      LRT +D    GNV RF NHSC+PN+    VR G L+PRL  F +R + AG+ELT  YG+  E                                RPC CG+  C G LP++P
Sbjct:   20 PNYAICLREHSAARVLRTWIDPAARGNVGRFVNHSCEPNLSAHAVRAGSLVPRLALFARRDIAAGEELTMTYGDGAEAAGGGESAA------------------LGAGRRPCLCGAATCGGWLPFEP 128          
BLAST of EWM21053.1 vs. NCBI_GenBank
Match: gi|260809996|ref|XP_002599790.1| (hypothetical protein BRAFLDRAFT_70261 [Branchiostoma floridae] >gi|229285072|gb|EEN55802.1| hypothetical protein BRAFLDRAFT_70261 [Branchiostoma floridae])

HSP 1 Score: 82.4185 bits (202), Expect = 5.323e-14
Identity = 47/146 (32.19%), Postives = 72/146 (49.32%), Query Frame = 0
Query:  360 GDKEERRGGQVHAGPRPHYLLTLLEE-GDDFYLRTSLDATRCGNVSRFFNHSCDPNMHVVCVRNGGLLPRLCFFTQRRVHAGDELTFAYGEREENHASKGGVKVESGARCGRSCAKGTILPQSQSGRPCWCGSEKCVGNLPYQPGL 504
            G +E ++  Q       +Y+LTL E       + T +D T  GNV R+ NHSC PN+ ++ VR    +P+L  F  + +  G+EL+F Y     N  ++G ++  +G               S   +PC+CGSE C G LP+ P L
Sbjct:  131 GLEEAKKRTQNMKKEDMNYILTLREHVASGNIIETHIDPTYIGNVGRYINHSCSPNLLMLPVRVDSEVPKLALFAGKDIEVGEELSFDYSGEYGNVVNQGNLQKVTGQS-----------KDSSKLKPCFCGSEMCTGFLPFDPSL 265          
BLAST of EWM21053.1 vs. NCBI_GenBank
Match: gi|1096023671|ref|XP_018779423.1| (PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase SETMAR [Serinus canaria])

HSP 1 Score: 82.8037 bits (203), Expect = 5.601e-14
Identity = 47/146 (32.19%), Postives = 70/146 (47.95%), Query Frame = 0
Query:  360 GDKEERRGGQVHAGPRPHYLLTLLEE-GDDFYLRTSLDATRCGNVSRFFNHSCDPNMHVVCVRNGGLLPRLCFFTQRRVHAGDELTFAYGEREENHASKGGVKVESGARCGRSCAKGTILPQSQSGRPCWCGSEKCVGNLPYQPGL 504
            G  E +R  Q  +   P+Y++ + E   D   L T +D  R GNV RF NHSC+PN+ +V VR   ++P+L  F    + AG+ELT+ Y  R +N                 S     +  ++   +PC+CGS  C   LP+   L
Sbjct:  148 GSAEAQRRAQAQSPQEPNYIIAVREHLHDGRVLETFVDPARIGNVGRFLNHSCEPNLFMVPVRVDSMVPKLALFAATDISAGEELTYDYSGRFQNFPET-------------SREHKALEEENSLRKPCYCGSRTCASFLPWDSSL 280          
BLAST of EWM21053.1 vs. NCBI_GenBank
Match: gi|566199711|ref|XP_002319719.2| (SET domain-containing family protein [Populus trichocarpa] >gi|550325075|gb|EEE95642.2| SET domain-containing family protein [Populus trichocarpa])

HSP 1 Score: 83.5741 bits (205), Expect = 7.774e-14
Identity = 49/111 (44.14%), Postives = 60/111 (54.05%), Query Frame = 0
Query:  391 LRTSLDATRCGNVSRFFNHSCDP-NMHVVCVRN-GGLLPRLCFFTQRRVHAGDELTFAYGEREENHASKGGVKVESGARCGRSCAKGTILPQSQSGRPCWCGSEKCVGNLP 499
            LR ++DATR GNV+RF NHSCD  N+  V VR+ G LLPRLCFF  R +  G+ELTF+YGE          ++V S                   G  C+CGS  C G LP
Sbjct:  277 LRINIDATRTGNVARFINHSCDGGNLTTVLVRHTGSLLPRLCFFASRNIKEGEELTFSYGE----------IRVRS------------------KGLQCFCGSSCCFGTLP 359          
BLAST of EWM21053.1 vs. NCBI_GenBank
Match: gi|743873050|ref|XP_011034294.1| (PREDICTED: histone-lysine N-methyltransferase SUVR3 [Populus euphratica])

HSP 1 Score: 83.5741 bits (205), Expect = 8.290e-14
Identity = 49/111 (44.14%), Postives = 60/111 (54.05%), Query Frame = 0
Query:  391 LRTSLDATRCGNVSRFFNHSCDP-NMHVVCVRN-GGLLPRLCFFTQRRVHAGDELTFAYGEREENHASKGGVKVESGARCGRSCAKGTILPQSQSGRPCWCGSEKCVGNLP 499
            LR ++DATR GNV+RF NHSCD  N+  V VR+ G LLPRLCFF  R +  G+ELTF+YGE          ++V S                   G  C+CGS  C G LP
Sbjct:  276 LRINIDATRTGNVARFINHSCDGGNLTTVLVRHTGSLLPRLCFFASRNIKEGEELTFSYGE----------IRVRS------------------KGLQCFCGSSCCFGTLP 358          
The following BLAST results are available for this feature:
BLAST of EWM21053.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101070|gb|EWM21053.1|0.000e+0100.00suppressor of variegation 3-9 [Nannochloropsis gad... [more]
gi|470413560|ref|XP_004336591.1|6.123e-1745.54SET domain containing protein [Acanthamoeba castel... [more]
gi|695051687|ref|XP_009413878.1|1.800e-1536.00PREDICTED: histone-lysine N-methyltransferase SUVR... [more]
gi|939280165|ref|XP_014260680.1|8.347e-1535.38PREDICTED: probable histone-lysine N-methyltransfe... [more]
gi|908407843|ref|XP_013062772.1|3.311e-1432.28PREDICTED: histone-lysine N-methyltransferase SETM... [more]
gi|551601783|ref|XP_005782508.1|4.320e-1436.22histone-lysine N-methyltransferase, partial [Emili... [more]
gi|260809996|ref|XP_002599790.1|5.323e-1432.19hypothetical protein BRAFLDRAFT_70261 [Branchiosto... [more]
gi|1096023671|ref|XP_018779423.1|5.601e-1432.19PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-m... [more]
gi|566199711|ref|XP_002319719.2|7.774e-1444.14SET domain-containing family protein [Populus tric... [more]
gi|743873050|ref|XP_011034294.1|8.290e-1444.14PREDICTED: histone-lysine N-methyltransferase SUVR... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9655rna9655Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications