rna9653, rna9653 (mRNA) Nannochloropsis gaditana

Overview
Namerna9653
Unique Namerna9653
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length4201
Alignment locationKK037255.1:69608..70024 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100221g8.4573.mrna
Orig protein idgnl|cribi|Naga_100221g8.4573
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:69608..70024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100221g8gene9373Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9653rna9653-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21049.1cds9622Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9653 ID=rna9653|Name=rna9653|organism=Nannochloropsis gaditana|type=mRNA|length=4201bp
CTATGTACATTCAGCGACACCCGGGGGATAGAAGGAAAGTACCTGCAAGC
TAGCTGCTTTCTGGCAAAATTTATAGATTGGTCGATGCGCTCTCACTTAC
GTCACGCCCACAATATTGTCCACACAGCACTATGACCGATGTGCAGATCC
GAAAGCTGTCGTCCCTCCTCCATGACATGGCCAGGGCCCAAAAGCTCCAA
GCGCAACAGGAGCAGGTGTCAAGGCGCCGCCGAGAAAGTTCATGCCTACA
GTATCGACCTTTATCGTCGTCTTCTTCATGTCCTTCTCTGCCTGAGCACA
GAAGTGATGTGTCCCGGCATGCTCCTGCCCCACATCCTCGCTATTCCTTC
TTTGGGAAGCCCCTTCTCCCTTCGTCCTTCCACGAAGAGGTGTTCCAGCC
GGGACGGGCCGCATTCTCAGGCCCCGTGCCTACCGTTCTAAGAAATCCCA
TCACTGGGCGTGGCTACCGGTTTGTTTCCCTGATAAACCACTGTAAATAT
CCGAATTATGTGGTCTTGGCCACGCCCGAGCACGGCACTGCATCGATCCC
CGCCTTCCCTACCCAGCCACATGTCGAAGATGATAGAGTTGTGGTCAAGG
TGATTCATCAATCGGCAGTCCAAGCCTCCTTGGGGAAAGGCAAGCCCATG
GGAGAGCTGGCAGCCCACCTCCACCTGGCCTCCTCTTCCCTTCTGCCCGG
CCGGGGAGACGAGAAGGCGCAGAAGGGTCCTGTCGGTGTCATCCCCTTGA
TGGAGGCATGGGCCGACCCGGACTACTTGTACCTCGTCTTTCCCTACGCG
AACGGGGGCGAACTCTTCGACTACGTGGCCCAGCACCCGCACGGGGTCGG
GGAAGCCAAGGCGCGAGGGATCTTTAGGGGCATGGCGAGGGCGTTGCAGG
ACTTGCACGGGCGGGGGATCAGCCACGGGGACGTCAGTTTGGAGAACGTG
ATGCTGTCCTACGACGGGGAGAGGGAAGGGCCGACATGTCACCTCATCGA
TTTGGAAATGGCCCGGCATTTGGAGGAGGCGGAGGAGGAAGAGGAGGAGG
AGCAGGAGGAGGCGGCGATGGAGGTGGAGTACGGGGAAAGCGGGTCGAGC
TGGGGCCAGGCGTTTGAAGCTTCGAGTCCTTCCGTCCCCTCCCCTTTCTC
CTCCTCCATCGGTACCTCCGCCCCTTCCTGGACCCCACTGGACGGCTCCC
CCCCGGCCCGTGCCCTCTCGAACCCTTTCCTGACGATCGCGGGGGGGAAA
CCGGGCTATGTCTCGCCTGAAATCGTCCGTGGCACTCTGCGGGACTGGGG
GGCTTCGGACGTGTGGTCTTTGGGCATTTGCCTCGTCATCCTCTTGACCG
GCCGGCCCCTCTACGCCGACCCGGAGGATCCCTGCTTCAACTTGCTGGGC
CACGGGATGATTGCCGAGGTCCTGGGACATTATGCTCGGGAATATGGCAT
CGATCTGCCCGCGGGAGCCCTCTCCCTCGTCATCGCCATGCTCGATGCGA
ACCCGGCGGCCCGACCAACCCTCCAAGAGATCATGGCACACTCCTGGGTC
ATGCAGGAGCCGACGCCGGAAAAGTCCCTGTCGTACCAGCTACCGCAGGG
AGCCCGGCTTGGTCTGGAGGAGGGGGCAGAGGAGGGAGAGGCAGGAAGGT
GGTCGCCGCTCGCGGGGTCGGCTGAGGGGAAGGAGGAGGAGATGGAAGGG
AATAGGCAGGTGTTGGAGAATGACGCCGTGGCGGTCGAGGGAGCAGGCTC
TTGGGACACGGCGGCTTCTCGCACCGGAGATCAGGAGCAGGGCCACCTCG
TCCCCGACCATACCCGGAGGATGCGGGGTGCACGCTGCAGGACGGCGAGG
CTTCCTCGGGAAAGGCTTTGCCAGCACCACGACACCGCCTCCGTGGGGCG
GCGTCGCATCTGCCTTCAACCCCTTGGACAGAGCACGGCGGAGGACGGAC
AGGAAAGGACCGAGGCAGGGCGGGAAAGAGGGAAAGAAGGAGGGCGGGTC
GATCAACCCTTGTGGTCGAGGCCTCTGGCATCGCCGCTTTCCTCTCTTTC
CCCAACGCGTTCTCCGTCTCGTCCCGACCCTGCTCGGGGTTTTTCGGGCA
GCGAAGCCGGCATGGACACCCTCACCGGGGCTGCCTCGCCTTTCTCCCCG
CCCTCGCTCCCCGCACGGGGCGAGAAGGAGGGAGGGGCCCCGGCACTTCC
CCTCTCAGTCCTTCCCCCGACCCTGGACCTGCCGGCCTGCCCGTGTCCTA
CCGATCCTTTGTGGGACTCGGCGGCGACCACCACCTCCCCGGCCCCTTTC
TCCTTCCCTTCCTCCCCTTTCCCCGCCACCTCGTTACCCCTGGAATCCCA
CCAGGCGGCGCAGGGAACGCCCGTGTGCTGGGGAGGGGGAGGGAGAAGCC
AAGATAGCGCCGAGCCCCGCGGGCGATGCGGGCAGGCACCTCCGTCCCTT
ATCACCCAGGTCGACGGGTGCAGCCCGAGCCAAGCAGGGCGACAGCGGTG
GGATGCTTTCATGGATTTCCCGGCCTCTTCCGATCACCATGCCTACCACA
CCCTACAGGAGTGTGACAACCTATGTTCCCCCCCTCCCTCCTCCCGCGCC
GGCACCGCCGCCTCACCTTCGACCCTGGCCACGCCCCGCCGGTCTCTGGA
TCTCCGGCCTTCCCTCCTCTCCTCCTTCCCGGCCTCGCCTGCCTTTCCTC
AATCTACCCATCACGGTTCCGTCCCTCCCCACGCCGCCCGACACATCCCG
TCGACGGCCTTTACGGCTTCCTCCTTTCGGTGCCTGGAAGGCCGGTAACG
AGCTCAGACGCACAGAGGGAGGAAAGGAAGGGCAGCAGTGCACGGACTTC
CTGAGTGGAAGGAACGTCCGACTGGCAAAAGGCGATAGGTACAGGAGGCA
AGAGGAGGGGGAAAAATGGCGCGAAAATTGCCGAGGCGAGGAAGCCAAGC
TGGTTCCGTGGGACGGCAGGGGGAAAGAGTTCCAAGGCCGCTGCCAGCCC
TGTCATTTTCGGTGTAGGAGGCCTTAACTCCGCCAGAGTCTCGGGTAGAG
TCCCGGGTAATTTGGTTCTGGTCGTCTTTCGAAAACTGGGGTCCCCAATA
TCTAGAACAGCCAAACAGACAACGCATCCAGCCCCTACCATGCCTAGAGG
AACGTAGGACAGAGAATGCGAACGGTCAGCGTGAGCGGCGAAGACTGCTA
TGTGAAATATTGTAAGCAATACACGATCCCGGAAGAGTGTCAGCTCCAAG
AACAGAAGCGGAACCTTATTTATTACTACAATTATTATAAATGCTGTGCA
CGACGCAGACGGCAGCAGCAGCAGCAATGTCAGTACATTGTCGCGAGACC
AGCAAGAGCAAACCGTGCCCTACACATCTCCAGCCCGGGCGGCAAGCATT
ACTTACTTTACGTCAGAAACCTGTGACATGGAGCGAAAAAAAAGCAGCCG
CAGCAATGTCAGTCCATTGTCGCTGCGAAAAAAAAGCAGCCGCAGCAATG
TCAGTCCATTGTCGCTGCAGATGGAAGAGATGGGAGGAAAGATTAAAGAG
AAGTCGGTTGGCCTAGGAGGAGAAGGCGGTAGGGAGTCATCAGACCAGCC
GGAGATGACTTTTACGGTCATAAAGGTTCGAAAAAAGGAATGGTTGCTCG
CACGGACTTGTGAGACAAGGCGATAGGAAGCGTCGAATCATGACAAAAAC
CATCCAAAGAGAAATACGAAGAGAAGAGAAGAGGGAGAGAGGGTAGCAAT
GCTGCCGAAATTCCAAGTTCGATAAAAAAGACGAAAGGGGAAAGAAAGGC
AAACGAACCAAGATTGTCACATTGTGGGAGGTAGGAATTATATGAGGGTG
ACCATAGAAGGCCTGGCTAGGAGGCATTGAGTGCGTGGAAAGAGCCCAAA
GTCGTGAGGCGTAATCAAGAGAAAGGACGTATCTGAGAAAATATGTGTGC
GACACATGTCCGAAGAATGCGTCAACAACCCTGAAGAGGGATCTCTGCTG
GTAAAGAGGGCAGTTGACTGAACACTCCAGCCGGCCCAGGTGCACGCACA
CCGCCCCGACTGTGAGAGTGGGGCGGCGTGACACGTAGCACCGACAGGAC
GCGGAAACGAAAAATATAGTTTCCCCCCCGGCGTGAATGAATGAGGAACA
TGGAGAGTAAACAAAAGTGCTTCGCGCTTGCACGCAATTTTGATTCATGG
A
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protein sequence of rna9653

>rna9653-protein ID=rna9653-protein|Name=rna9653|organism=Nannochloropsis gaditana|type=polypeptide|length=82bp
MSTGRTLSKRGFGEACTRHGLRDHYDLFQDSMRAQCYAFMVSPLFYGNGG
VTQIIKRRQAPVRHCQHAHQRRNMTWMPSSWI
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mRNA from alignment at KK037255.1:69608..70024+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9653 ID=rna9653|Name=rna9653|organism=Nannochloropsis gaditana|type=mRNA|length=417bp|location=Sequence derived from alignment at KK037255.1:69608..70024+ (Nannochloropsis gaditana)
ATGTCGACAGGACGTACATTAAGTAAGCGAGGTGCCTAGTACAATTTTGG
AATCACCCATCCATCATGTAATTTTTCCTGGGGAATCTGTCCCCCGGACA
TTGCCTTGACATACCATCTGCCAGCGTTCGACCCCGTGCCGAAAAAAGAA
AACATACACTCTCCTTACGAGAAGATACAATAGGCCCGGCGGCACGAAGG
TTTTGGTGAAGCCTGTACACGACATGGCCTCCGAGACCATTATGATCTTT
TTCAGGATTCAATGCGTGCGCAGTGTTACGCATTTATGGTTTCCCCCTTG
TTCTACGGTAACGGTGGCGTGACTCAAATCATAAAAAGAAGGCAGGCGCC
GGTCCGTCACTGTCAACATGCTCATCAGAGGAGAAATATGACTTGGATGC
CATCATCATGGATATGA
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Coding sequence (CDS) from alignment at KK037255.1:69608..70024+

>rna9653 ID=rna9653|Name=rna9653|organism=Nannochloropsis gaditana|type=CDS|length=498bp|location=Sequence derived from alignment at KK037255.1:69608..70024+ (Nannochloropsis gaditana)
ATGTCGACAGGACGTACATTAAGTAAGCGAGGTTTTGGTGAAGCCTGTAC
ACGACATGGCCTCCGAGACCATTATGATCTTTTTCAGGATTCAATGCGTG
CGCAGTGTTACGCATTTATGGTTTCCCCCTTGTTCTACGGTAACGGTGGC
GTGACTCAAATCATAAAAAGAAGGCAGGCGCCGGTCCGTCACTGTCAACA
TGCTCATCAGAGGAGAAATATGACTTGGATGCCATCATCATGGATATGAA
TGTCGACAGGACGTACATTAAGTAAGCGAGGTTTTGGTGAAGCCTGTACA
CGACATGGCCTCCGAGACCATTATGATCTTTTTCAGGATTCAATGCGTGC
GCAGTGTTACGCATTTATGGTTTCCCCCTTGTTCTACGGTAACGGTGGCG
TGACTCAAATCATAAAAAGAAGGCAGGCGCCGGTCCGTCACTGTCAACAT
GCTCATCAGAGGAGAAATATGACTTGGATGCCATCATCATGGATATGA
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Synonyms
Publications