rna9646, rna9646 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9646
Unique Name	rna9646
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1323
Alignment location	KK037255.1:47815..48545 -

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Properties


Property Name	Value
Product	gmp synthase
Orig transcript id	gnl\|cribi\|Naga_101462g1.3664.mrna
Orig protein id	gnl\|cribi\|Naga_101462g1.3664
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037255.1	supercontig	KK037255.1:47815..48545 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101462g1	gene9366	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21057.1	cds9615	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9646	rna9646-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037255.1:47815..48545-
coding sequence from alignment at KK037255.1:47815..48545-

mRNA sequence

>rna9646 ID=rna9646|Name=rna9646|organism=Nannochloropsis gaditana|type=mRNA|length=1323bp
GGATGCTTCGTGTGTTTTATTGGGGGGGGAGTGGGAGAGCTGCAGTATGG
AGCTTGGGAGGGAGATGGCGTGACCGTTGTTGTCCTTCAAGGTGTGTTTC
TTGGTCGGCACGTTGCCTGTGATAGCGCCTTCCCGGCTAGCTGTGTGCTG
ACCCTCCTGCTCCTCTCTTTGTTGCCCCCCTTATCTTGCCCAGCATTTCG
ACCCGTATTATCAACGAGGTCCAGGGGATTAACCGGTGCGCTTATGACTG
TTCATCCAAGCCCCCCGCGACCATCGAGTGGGAGTAGGTGCCCGGTCGTG
TAAGGGAGGAAGGAGAAGCATAGATGCCAAGACGGAAAGGAAGGAGGAAG
GAGGTGGTCGTGGAGGGATCTCAGAGGAGGGAGCACAGGAACAGGAAGCC
TTAGTAGGGGAGAAAGGGGGCCGCCGGTTATCAGCTGGAGAGGTAGAACA
AGCGGGCTTGGACACGTACTTTCCTGGTTTGGAGATATGTGTACTGTAGG
TGTTGTCTTGAAGCAATACAACTTGCAAATAAACGGAATCTCGAACTCCT
TGTGTAACTTTCTTCGTCCGCGAGTCGCCAAATTTGTTTACGATACCCGG
CGGCCGGCCAAACGGCACATTTTCGACCGCGAATCCATCACGTGTGGTCT
GCATTCCGTACATGTGCCTGTACTTCTCCGGCAGCCAAAGAAGCGACTTA
TTGGCGGGATGGCGTCACCGTTCCACAGACACGCCAATGGCCTGATGCCG
GCATCTACCCCGTCACCCGGGGCGGGCATTTCGTGGCATGTGTTTCCTCG
GACTTGCTCAACACCCAGCCCAGCATCAACTACAGCATCAACACAGCATC
AACCCTACACTGCCTATAATCCCAGTAAATCGGCCGAACCCTACCTATAG
GCCTTGATGAGGGTAGTGGGGGCAGGCAGTGATTGGAACTCTCACCATGC
TTTCCTTGTCGAAAGTCTTCAGGGGGAGGTGGTAGAAGATGGAGGAAACC
ATCCAACCGAGAAAGCGTTGGGAGGTATAGTAGGAATGAGAGGGGGTGGA
GGAAAGGAAGGAGGGAGAGAAGGGAAGCAGGAGATGCAGTTGTAAGGGAA
TGCGTTGAATTTGTGAGAGTGAAAGAGGACGCACAGAGAGAGGAGAAAGA
GAAGGAGCGCTGGAAAGAAAAGGAGGAAGAAGAGCTGAAAAACCAGCGTA
GCGCGTTATTTTGTCTCTTGAGTGCATGTGTGTGAACGTGTATGCACGTG
GAACGAAAATGAAGAAGGGGCCTGTGCAAGTCAACGATAGAAGAAATCAA
AGGGTCCTGTTATGTGAATTGAT

protein sequence of rna9646

>rna9646-protein ID=rna9646-protein|Name=rna9646|organism=Nannochloropsis gaditana|type=polypeptide|length=144bp
MLASPSFIQASIATVLSYSTSYKRSDATSPGRSCLFALASRTSPVLSISP
PSSFLAPLCFRFPARLPSSARMDGQLHVDRPQIAILDFGSQYSHLIARRV
RELHVFCELYSCLVKGEVLRKNQVVGIILSGGPNSVYAVSRGCA

mRNA from alignment at KK037255.1:47815..48545-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9646 ID=rna9646|Name=rna9646|organism=Nannochloropsis gaditana|type=mRNA|length=731bp|location=Sequence derived from alignment at KK037255.1:47815..48545- (Nannochloropsis gaditana)
TGTGCGTGGGGTTTTGTGGGTGTTTTGGGGAAAAGAAAGGGGAAGTAGCT
GATGACCGTCGTTTCAGGGGGTATCACCCCAAGCTCCTGATGCTGAGGAA
AAACCTATTCTTTCCAAGACACATTATATCACCGACTATGTCCTCTACGT
CCTTGGATGGTGCGAGGCAGCGTGTGCAAAGCCAGGAGAGTAGTTATGAT
GTCGTTTGTCCCGGACATTTTTTTGCGTATGACGACGATCATGGTTGAAC
CTCTTCAGGCACGGGATGCTTGCCTCCCCTTCATTCATCCAAGCATCAAT
CGCCACCGTCCTTTCTTATTCTACCAGCTACAAAAGATCCGACGCCACCT
CACCTGGGCGAAGCTGCCTCTTTGCGTTGGCGTCCCGTACGTCACCCGTC
TTATCCATTTCTCCCCCCTCCTCCTTCCTTGCACCTCTGTGTTTCAGATT
CCCTGCCCGCCTGCCCTCTTCCGCTCGCATGGACGGACAACTCCATGTTG
ACCGGCCGCAGATCGCCATTTTGGATTTTGGCTCCCAGTACTCCCATCTG
ATTGCCCGGCGGGTGCGTGAGCTGCACGTGTTTTGCGAGCTGTATTCCTG
CCTGGTGAAAGGCGAAGTCTTGCGGAAAAATCAGGTGGTAGGGATTATTC
TGTCAGGGGGGCCGAATTCCGTCTATGCGGTGAGTAGAGGGTGCGCGTGA
AGGAGAAAAAAAGGGGGCAATGGAGACCCGG

Coding sequence (CDS) from alignment at KK037255.1:47815..48545-

>rna9646 ID=rna9646|Name=rna9646|organism=Nannochloropsis gaditana|type=CDS|length=435bp|location=Sequence derived from alignment at KK037255.1:47815..48545- (Nannochloropsis gaditana)
ATGCTTGCCTCCCCTTCATTCATCCAAGCATCAATCGCCACCGTCCTTTC
TTATTCTACCAGCTACAAAAGATCCGACGCCACCTCACCTGGGCGAAGCT
GCCTCTTTGCGTTGGCGTCCCGTACGTCACCCGTCTTATCCATTTCTCCC
CCCTCCTCCTTCCTTGCACCTCTGTGTTTCAGATTCCCTGCCCGCCTGCC
CTCTTCCGCTCGCATGGACGGACAACTCCATGTTGACCGGCCGCAGATCG
CCATTTTGGATTTTGGCTCCCAGTACTCCCATCTGATTGCCCGGCGGGTG
CGTGAGCTGCACGTGTTTTGCGAGCTGTATTCCTGCCTGGTGAAAGGCGA
AGTCTTGCGGAAAAATCAGGTGGTAGGGATTATTCTGTCAGGGGGGCCGA
ATTCCGTCTATGCGGTGAGTAGAGGGTGCGCGTGA

Synonyms

Publications