EWM21057.1, cds9615 (CDS) Nannochloropsis gaditana

Overview
NameEWM21057.1
Unique Namecds9615
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:47846..48280 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21057.1
Productgmp synthase
Orig transcript idgnl|cribi|Naga_101462g1.3664.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:47846..48280 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
Vocabulary: INTERPRO
TermDefinition
IPR017926GATASE
IPR029062Class_I_gatase-like
Homology
BLAST of EWM21057.1 vs. NCBI_GenBank
Match: gi|585101080|gb|EWM21057.1| (gmp synthase [Nannochloropsis gaditana])

HSP 1 Score: 288.5 bits (737), Expect = 1.135e-98
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0
Query:    1 MLASPSFIQASIATVLSYSTSYKRSDATSPGRSCLFALASRTSPVLSISPPSSFLAPLCFRFPARLPSSARMDGQLHVDRPQIAILDFGSQYSHLIARRVRELHVFCELYSCLVKGEVLRKNQVVGIILSGGPNSVYAVSRGCA 144
            MLASPSFIQASIATVLSYSTSYKRSDATSPGRSCLFALASRTSPVLSISPPSSFLAPLCFRFPARLPSSARMDGQLHVDRPQIAILDFGSQYSHLIARRVRELHVFCELYSCLVKGEVLRKNQVVGIILSGGPNSVYAVSRGCA
Sbjct:    1 MLASPSFIQASIATVLSYSTSYKRSDATSPGRSCLFALASRTSPVLSISPPSSFLAPLCFRFPARLPSSARMDGQLHVDRPQIAILDFGSQYSHLIARRVRELHVFCELYSCLVKGEVLRKNQVVGIILSGGPNSVYAVSRGCA 144          
BLAST of EWM21057.1 vs. NCBI_GenBank
Match: gi|673043401|ref|XP_008875661.1| (GMP synthase (glutamine-hydrolyzing) domain-containing protein [Aphanomyces invadans] >gi|574468450|gb|ETV95468.1| GMP synthase (glutamine-hydrolyzing) domain-containing protein [Aphanomyces invadans])

HSP 1 Score: 112.849 bits (281), Expect = 2.020e-26
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 0
Query:   79 DRPQIAILDFGSQYSHLIARRVRELHVFCELYSCLVKGEVLRKNQVVGIILSGGPNSVY 137
            +RPQIAILDFGSQYSHLIARRVRELHVFCELYSCLV  E L K+Q+ GIILSGGPNSVY
Sbjct:    7 NRPQIAILDFGSQYSHLIARRVRELHVFCELYSCLVTAEELSKHQLTGIILSGGPNSVY 65          
BLAST of EWM21057.1 vs. NCBI_GenBank
Match: gi|669139898|ref|XP_008605517.1| (GMP synthase (glutamine-hydrolysing) [Saprolegnia diclina VS20] >gi|530742431|gb|EQC40673.1| GMP synthase (glutamine-hydrolysing) [Saprolegnia diclina VS20])

HSP 1 Score: 112.079 bits (279), Expect = 4.066e-26
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 0
Query:   79 DRPQIAILDFGSQYSHLIARRVRELHVFCELYSCLVKGEVLRKNQVVGIILSGGPNSVY 137
            +RPQ+AILDFGSQYSHLIARRVRELHVFCELYSCLV  E LRK+++ GIILSGGPNSVY
Sbjct:    9 NRPQVAILDFGSQYSHLIARRVRELHVFCELYSCLVTVEELRKHELTGIILSGGPNSVY 67          
BLAST of EWM21057.1 vs. NCBI_GenBank
Match: gi|698792476|ref|XP_009829270.1| (GMP synthase (glutamine-hydrolyzing) domain-containing protein [Aphanomyces astaci] >gi|574115927|gb|ETV81412.1| GMP synthase (glutamine-hydrolyzing) domain-containing protein [Aphanomyces astaci])

HSP 1 Score: 111.309 bits (277), Expect = 7.856e-26
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 0
Query:   79 DRPQIAILDFGSQYSHLIARRVRELHVFCELYSCLVKGEVLRKNQVVGIILSGGPNSVY 137
            +RPQIAILDFGSQYSHLIARRVRELHVFCELYSCLV  E L K+Q+ GIILSGGPNSVY
Sbjct:    7 NRPQIAILDFGSQYSHLIARRVRELHVFCELYSCLVTVEELSKHQLTGIILSGGPNSVY 65          
BLAST of EWM21057.1 vs. NCBI_GenBank
Match: gi|1173947644|gb|OQR95870.1| (GMP synthase, glutamine-hydrolyzing [Thraustotheca clavata])

HSP 1 Score: 109.383 bits (272), Expect = 3.586e-25
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 0
Query:   79 DRPQIAILDFGSQYSHLIARRVRELHVFCELYSCLVKGEVLRKNQVVGIILSGGPNSVY 137
            +RPQ+AILDFGSQYSHLIARRVRELHVFCELYSCLV  E L K+++ GIILSGGPNSVY
Sbjct:   10 NRPQVAILDFGSQYSHLIARRVRELHVFCELYSCLVTVEELSKHELTGIILSGGPNSVY 68          
BLAST of EWM21057.1 vs. NCBI_GenBank
Match: gi|325182303|emb|CCA16757.1| (unnamed protein product [Albugo laibachii Nc14])

HSP 1 Score: 108.997 bits (271), Expect = 5.383e-25
Identity = 50/63 (79.37%), Postives = 57/63 (90.48%), Query Frame = 0
Query:   75 QLHVDRPQIAILDFGSQYSHLIARRVRELHVFCELYSCLVKGEVLRKNQVVGIILSGGPNSVY 137
            QL  DR QIAILDFGSQYSHLIARRVRELHVFCELYSCLV+ + LR++++ GIILSGGPNSV+
Sbjct:    3 QLVADRSQIAILDFGSQYSHLIARRVRELHVFCELYSCLVEAKELRQHRLNGIILSGGPNSVF 65          
BLAST of EWM21057.1 vs. NCBI_GenBank
Match: gi|1173932973|gb|OQR84855.1| (GMP synthase [Achlya hypogyna])

HSP 1 Score: 108.612 bits (270), Expect = 7.603e-25
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 0
Query:   79 DRPQIAILDFGSQYSHLIARRVRELHVFCELYSCLVKGEVLRKNQVVGIILSGGPNSVY 137
            +RPQ+AILDFGSQYSHLIARRVRELHVFCELYSCLV  E L K+ + GIILSGGPNSVY
Sbjct:    9 NRPQVAILDFGSQYSHLIARRVRELHVFCELYSCLVTVEELSKHDLTGIILSGGPNSVY 67          
BLAST of EWM21057.1 vs. NCBI_GenBank
Match: gi|635362851|emb|CCI48502.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 107.071 bits (266), Expect = 2.592e-24
Identity = 49/63 (77.78%), Postives = 55/63 (87.30%), Query Frame = 0
Query:   75 QLHVDRPQIAILDFGSQYSHLIARRVRELHVFCELYSCLVKGEVLRKNQVVGIILSGGPNSVY 137
            Q   DR QIAILDFGSQYSHLIARRVRELHVFCELYSCLV  + LR++++ GIILSGGPNSV+
Sbjct:    3 QFVTDRSQIAILDFGSQYSHLIARRVRELHVFCELYSCLVDAKELRQHRLNGIILSGGPNSVF 65          
BLAST of EWM21057.1 vs. NCBI_GenBank
Match: gi|223999079|ref|XP_002289212.1| (GMP synthase [Thalassiosira pseudonana CCMP1335] >gi|220974420|gb|EED92749.1| GMP synthase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 106.301 bits (264), Expect = 4.771e-24
Identity = 46/61 (75.41%), Postives = 55/61 (90.16%), Query Frame = 0
Query:   77 HVDRPQIAILDFGSQYSHLIARRVRELHVFCELYSCLVKGEVLRKNQVVGIILSGGPNSVY 137
            +++RPQ+AILDFGSQYSHLIARRVRELHV+CELYSCLV  E L K+++  +ILSGGPNSVY
Sbjct:   16 NINRPQVAILDFGSQYSHLIARRVRELHVYCELYSCLVSPEELGKHELTAVILSGGPNSVY 76          
BLAST of EWM21057.1 vs. NCBI_GenBank
Match: gi|695403619|ref|XP_009523327.1| (hypothetical protein PHYSODRAFT_345503 [Phytophthora sojae] >gi|348680794|gb|EGZ20610.1| hypothetical protein PHYSODRAFT_345503 [Phytophthora sojae])

HSP 1 Score: 106.301 bits (264), Expect = 5.311e-24
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 0
Query:   79 DRPQIAILDFGSQYSHLIARRVRELHVFCELYSCLVKGEVLRKNQVVGIILSGGPNSVY 137
            +R Q+AILDFGSQYSHLIARRVRELHVFCELYSCLV  E LR++Q+ GIILSGGP SV+
Sbjct:    9 NRKQVAILDFGSQYSHLIARRVRELHVFCELYSCLVSAEELRQHQLTGIILSGGPQSVF 67          
The following BLAST results are available for this feature:
BLAST of EWM21057.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101080|gb|EWM21057.1|1.135e-98100.00gmp synthase [Nannochloropsis gaditana][more]
gi|673043401|ref|XP_008875661.1|2.020e-2686.44GMP synthase (glutamine-hydrolyzing) domain-contai... [more]
gi|669139898|ref|XP_008605517.1|4.066e-2684.75GMP synthase (glutamine-hydrolysing) [Saprolegnia ... [more]
gi|698792476|ref|XP_009829270.1|7.856e-2686.44GMP synthase (glutamine-hydrolyzing) domain-contai... [more]
gi|1173947644|gb|OQR95870.1|3.586e-2583.05GMP synthase, glutamine-hydrolyzing [Thraustotheca... [more]
gi|325182303|emb|CCA16757.1|5.383e-2579.37unnamed protein product [Albugo laibachii Nc14][more]
gi|1173932973|gb|OQR84855.1|7.603e-2583.05GMP synthase [Achlya hypogyna][more]
gi|635362851|emb|CCI48502.1|2.592e-2477.78unnamed protein product [Albugo candida][more]
gi|223999079|ref|XP_002289212.1|4.771e-2475.41GMP synthase [Thalassiosira pseudonana CCMP1335] >... [more]
gi|695403619|ref|XP_009523327.1|5.311e-2479.66hypothetical protein PHYSODRAFT_345503 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9646rna9646Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications