rna9641, rna9641 (mRNA) Nannochloropsis gaditana

Overview
Namerna9641
Unique Namerna9641
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length568
Alignment locationKK037255.1:38629..40107 -

Link to JBrowse

Properties
Property NameValue
Productprotein of unknown function DUF1990
Orig transcript idgnl|cribi|Naga_101454g1.2322.mrna
Orig protein idgnl|cribi|Naga_101454g1.2322
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:38629..40107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101454g1gene9361Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21063.1cds9610Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9641rna9641-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9641 ID=rna9641|Name=rna9641|organism=Nannochloropsis gaditana|type=mRNA|length=568bp
GTCCACTACCCTCCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCAGGT
TCTCGCCGCCTGCCTGGGCATGTGCGGTATCATTCTGGAGGTGACCGCTC
GCTTCGATCCGTCCACGGACGCCGTGCAAGTCACCCGGGGCCGGCGGCCC
TTGCACGACCTCCTCCCTCCCCGCTCGGTCCCCATCAACGCTTCTTTCAA
CCCCTTGCGGGATTTGATTGAGGTGGAAGGCTTCCACGGCGGGGCCTTGT
CCTACGCGCCCTACAACAGCGCGCCCGAGATTGGCGTCAAGCTCGAAGCG
AGTCGGATCGAGGAATACCAGGCGAAGGTCCTTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCGAGTGGCTCCTCCCACCCTTCCTCTCTAGT
CTCTTCTTCTTTCTGTCCTTTATTCATGGTCCTTCTGGCAGCGGTGTCTT
AGCCCTGGGGTCTCGCCCTTACCCCTTTCCCCTCCCTTTCTTCCTTCGGT
TTCTTCCTTTTTTCCTCTTTCTTGGTTTTTCCCCATCGCTTTTTTTTCCT
CCTTCATCCCACGACTCC
back to top

protein sequence of rna9641

>rna9641-protein ID=rna9641-protein|Name=rna9641|organism=Nannochloropsis gaditana|type=polypeptide|length=333bp
NFLISCRKRSRRGGGAYAEFEIRMPTSFCNLSVHLVPCLVVLLLLLLLPF
LPLVCPCASPPSPLNPPHSPPPSSRFVFSPHRPSPEIIADYLAAIPPSLP
PSLTPFRYRTLHAEPPYASLGKEGRREGGREGGREGGRVRLVSMEVCLGR
GQKTYAKAREALRGWKMHARSPTTGIVRGREGGREGGREGGRVGVVTLAR
VYGGGAWVMNPCCVAYESFDKQDRNGEGEGGRKGGREGGREGGGPRVWSA
VAYTTVGRHLIAGEERMRVIWYPRGRGRKGGREGGGEDEVWFEIVSVARG
NGWVGRLLFPSTQRMQRHFFQEQLRGMQFMVNT
back to top

mRNA from alignment at KK037255.1:38629..40107-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9641 ID=rna9641|Name=rna9641|organism=Nannochloropsis gaditana|type=mRNA|length=1479bp|location=Sequence derived from alignment at KK037255.1:38629..40107- (Nannochloropsis gaditana)
CGAACTTTTTGATTTCTTGCCGGAAGCGCAGCCGCCGAGGCGGGGGTGCC
TATGCAGAATTCGAAATTCGTATGCCCACTTCCTTCTGCAACCTTTCAGT
GCACCTGGTGCCCTGCCTCGTTGTCCTCCTCCTCCTTCTCCTCCTCCCCT
TCCTCCCTCTCGTCTGTCCCTGCGCCTCGCCTCCCTCTCCCTTGAACCCT
CCGCATTCCCCTCCTCCTTCCTCCCGTTTTGTGTTCTCCCCCCATCGGCC
AAGCCCGGAGATCATCGCCGACTACCTCGCCGCCATCCCTCCCTCCCTCC
CTCCCTCCCTCACCCCCTTTCGCTACCGTACCCTGCACGCGGAGCCACCG
TACGCCTCCCTGGGGAAGGAAGGAAGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGCGGGTCCGGCTGGTGTCGATGGAAGTCTGCCTGGGGA
GGGGTCAAAAGACGTACGCAAAAGCGCGGGAAGCGCTCCGCGGGTGGAAA
ATGCACGCAAGGAGCCCGACGACGGGGATCGTGCGAGGGAGGGAGGGAGG
GAGGGAGGGCGGGCGGGAGGGAGGGAGGGTCGGCGTCGTGACCTTGGCCC
GCGTGTACGGAGGAGGGGCCTGGGTGATGAATCCCTGCTGCGTCGCTTAT
GAAAGCTTCGACAAGCAGGACCGGAACGGCGAGGGAGAGGGAGGGAGGAA
GGGGGGAAGGGAGGGAGGGAGGGAGGGAGGGGGGCCACGGGTGTGGTCGG
CGGTTGCCTACACGACCGTCGGACGGCATTTGATCGCGGGCGAGGAGAGG
ATGAGGGTGATATGGTATCCAAGAGGGAGGGGGAGGAAAGGCGGGAGGGA
AGGCGGGGGGGAGGACGAGGTCTGGTTCGAGATCGTGTCGGTGGCGCGGG
GAAACGGATGGGTGGGACGTCTTCTTTTCCCTTCGACACAGCGGATGCAG
CGGCATTTCTTTCAGGAGCAACTTAGAGGAATGCAATTTATGGTCAACAC
GTAGACAGGCAATATATGTATAGATATATGTACACATATATGTATAGATA
TATGTACACACATATGTGTTGTCAACACGTAGACATGCAGTATATTGTTG
TCGTGCAGGAAGGCAATGTATTGTCAACAACATATGTGTTGTCAACACGT
AGACATGCAGTATATTGTTGTCGTGCAGGAAGGCAATGTATTGTCAACAT
TATGTATGTCGCCCGCACAGGAGAAATGAAGTAAAGGAAGAGTAAGTAAC
CGTATCGGTAGGGCCGCAATGCGCATCGGAGACAGGCACTTTTATAACGG
GCCATACTTTTCCATCGTCCCGAGCAGACGACGATGAATTCGCACTGAGC
AAGGAGAAGTAAAGAAAAAGACCCAAAAAACAACCCAACCCAAAAAAAGA
CTTGTCAGGGTCTGGAACCCGCACGCCCAGGCATGCGAGCCTCTCACAGT
CATGTGTCTTTTTTCCAGAAGGAAGGTAG
back to top

Coding sequence (CDS) from alignment at KK037255.1:38629..40107-

>rna9641 ID=rna9641|Name=rna9641|organism=Nannochloropsis gaditana|type=CDS|length=1002bp|location=Sequence derived from alignment at KK037255.1:38629..40107- (Nannochloropsis gaditana)
AACTTTTTGATTTCTTGCCGGAAGCGCAGCCGCCGAGGCGGGGGTGCCTA
TGCAGAATTCGAAATTCGTATGCCCACTTCCTTCTGCAACCTTTCAGTGC
ACCTGGTGCCCTGCCTCGTTGTCCTCCTCCTCCTTCTCCTCCTCCCCTTC
CTCCCTCTCGTCTGTCCCTGCGCCTCGCCTCCCTCTCCCTTGAACCCTCC
GCATTCCCCTCCTCCTTCCTCCCGTTTTGTGTTCTCCCCCCATCGGCCAA
GCCCGGAGATCATCGCCGACTACCTCGCCGCCATCCCTCCCTCCCTCCCT
CCCTCCCTCACCCCCTTTCGCTACCGTACCCTGCACGCGGAGCCACCGTA
CGCCTCCCTGGGGAAGGAAGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGCGGGTCCGGCTGGTGTCGATGGAAGTCTGCCTGGGGAGG
GGTCAAAAGACGTACGCAAAAGCGCGGGAAGCGCTCCGCGGGTGGAAAAT
GCACGCAAGGAGCCCGACGACGGGGATCGTGCGAGGGAGGGAGGGAGGGA
GGGAGGGCGGGCGGGAGGGAGGGAGGGTCGGCGTCGTGACCTTGGCCCGC
GTGTACGGAGGAGGGGCCTGGGTGATGAATCCCTGCTGCGTCGCTTATGA
AAGCTTCGACAAGCAGGACCGGAACGGCGAGGGAGAGGGAGGGAGGAAGG
GGGGAAGGGAGGGAGGGAGGGAGGGAGGGGGGCCACGGGTGTGGTCGGCG
GTTGCCTACACGACCGTCGGACGGCATTTGATCGCGGGCGAGGAGAGGAT
GAGGGTGATATGGTATCCAAGAGGGAGGGGGAGGAAAGGCGGGAGGGAAG
GCGGGGGGGAGGACGAGGTCTGGTTCGAGATCGTGTCGGTGGCGCGGGGA
AACGGATGGGTGGGACGTCTTCTTTTCCCTTCGACACAGCGGATGCAGCG
GCATTTCTTTCAGGAGCAACTTAGAGGAATGCAATTTATGGTCAACACGT
AG
back to top
Synonyms
Publications