EWM21063.1, cds9610 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21063.1 vs. NCBI_GenBank
Match: gi|585101089|gb|EWM21063.1| (protein of unknown function DUF1990, partial [Nannochloropsis gaditana]) HSP 1 Score: 662.529 bits (1708), Expect = 0.000e+0 Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 0
Query: 1 NFLISCRKRSRRGGGAYAEFEIRMPTSFCNLSVHLVPCLVVLLLLLLLPFLPLVCPCASPPSPLNPPHSPPPSSRFVFSPHRPSPEIIADYLAAIPPSLPPSLTPFRYRTLHAEPPYASLGKEGRREGGREGGREGGRVRLVSMEVCLGRGQKTYAKAREALRGWKMHARSPTTGIVRGREGGREGGREGGRVGVVTLARVYGGGAWVMNPCCVAYESFDKQDRNGEGEGGRKGGREGGREGGGPRVWSAVAYTTVGRHLIAGEERMRVIWYPRGRGRKGGREGGGEDEVWFEIVSVARGNGWVGRLLFPSTQRMQRHFFQEQLRGMQFMVNT 333
NFLISCRKRSRRGGGAYAEFEIRMPTSFCNLSVHLVPCLVVLLLLLLLPFLPLVCPCASPPSPLNPPHSPPPSSRFVFSPHRPSPEIIADYLAAIPPSLPPSLTPFRYRTLHAEPPYASLGKEGRREGGREGGREGGRVRLVSMEVCLGRGQKTYAKAREALRGWKMHARSPTTGIVRGREGGREGGREGGRVGVVTLARVYGGGAWVMNPCCVAYESFDKQDRNGEGEGGRKGGREGGREGGGPRVWSAVAYTTVGRHLIAGEERMRVIWYPRGRGRKGGREGGGEDEVWFEIVSVARGNGWVGRLLFPSTQRMQRHFFQEQLRGMQFMVNT
Sbjct: 1 NFLISCRKRSRRGGGAYAEFEIRMPTSFCNLSVHLVPCLVVLLLLLLLPFLPLVCPCASPPSPLNPPHSPPPSSRFVFSPHRPSPEIIADYLAAIPPSLPPSLTPFRYRTLHAEPPYASLGKEGRREGGREGGREGGRVRLVSMEVCLGRGQKTYAKAREALRGWKMHARSPTTGIVRGREGGREGGREGGRVGVVTLARVYGGGAWVMNPCCVAYESFDKQDRNGEGEGGRKGGREGGREGGGPRVWSAVAYTTVGRHLIAGEERMRVIWYPRGRGRKGGREGGGEDEVWFEIVSVARGNGWVGRLLFPSTQRMQRHFFQEQLRGMQFMVNT 333
BLAST of EWM21063.1 vs. NCBI_GenBank
Match: gi|299473044|emb|CBN77437.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 105.531 bits (262), Expect = 1.228e-22 Identity = 82/225 (36.44%), Postives = 103/225 (45.78%), Query Frame = 0
Query: 148 LGRGQKTYAKAREALRGWKMHARSPTTGIVRGREGGREGGREGGRVGVVTLARVYGGGAWVMNPCCVAYESFDKQDR--------------NGEGEGGRKGGR----------EGGREGGGPRVW-------------SAVAYTTVGRHLIAGEERMRVIWY--PRGRGRKGGREGGGEDEVWFEIVSVARGNGWVGRLLFPSTQRMQRHFFQEQLRGMQFMVNT 333
LG G++TYA+ REAL W+MH S I G+ R + +VT+A+ G W +NPC V YE D R +GE R G R P W SAVAY T HLI GEERMRV+ + P GG+D VWFE+ SV+RG G VG L+FP Q MQR FF+EQ M+ +VN+
Sbjct: 85 LGSGKETYARGREALLRWQMHEGSSWARIFLGQRPPRPALQRN----LVTIAKACAGLVWCINPCQVLYERNDVALRFIAPPGADANRSLDDGEARPVENTKRVMGGGGGALWAGKRPTSAPS-WASFLPGVKHKGRQSAVAYATKMGHLIQGEERMRVLHFCGP-----------GGDDSVWFEVYSVSRGAGLVGGLVFPFVQSMQRRFFREQAETMKRVVNS 293
BLAST of EWM21063.1 vs. NCBI_GenBank
Match: gi|551568271|ref|XP_005770095.1| (hypothetical protein EMIHUDRAFT_243855 [Emiliania huxleyi CCMP1516] >gi|551617943|ref|XP_005789789.1| hypothetical protein EMIHUDRAFT_225501 [Emiliania huxleyi CCMP1516] >gi|485621213|gb|EOD17666.1| hypothetical protein EMIHUDRAFT_243855 [Emiliania huxleyi CCMP1516] >gi|485643345|gb|EOD37360.1| hypothetical protein EMIHUDRAFT_225501 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 73.559 bits (179), Expect = 1.403e-11 Identity = 61/193 (31.61%), Postives = 88/193 (45.60%), Query Frame = 0
Query: 139 VRLVSMEVCLGRGQKTYAKAREALRGWKMHARSPTTGIVRGREGGREGGREGGRVGVVTLARVYGGGA---WVMNPCCVAYESFDKQDRNGEGEGGRKGGREGGREGGGPRVWSAVAYTTVGRHLIAGEERMRVIWYPRGRGRKGGREGGGEDEVWFEIVSVARGNGWVGRLLFPSTQRMQRHFFQEQLRGMQ 328
+R+++M V LG G+ + +AR L W+MH S + ++ GR +VTLA + WV NPC ++ +V Y+T+ HL+ GEE+M V+W RE DEV FE+VS +RG G +G+LLFP+ QR FF+EQ R MQ
Sbjct: 59 LRVIAMRVPLGHGRACWRRARRRLLSWEMHEGSTWSAVLVEDPPGR---------SLVTLAALPSPRLPLLWVSNPCRAVRRRVGRRR-------------------------CSVGYSTLSGHLLEGEEKMDVVW---------SRE---TDEVAFEVVSHSRGAGPLGKLLFPALSSTQRRFFREQCRCMQ 205
BLAST of EWM21063.1 vs. NCBI_GenBank
Match: gi|873220614|emb|CEM35385.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 70.8626 bits (172), Expect = 1.950e-10 Identity = 89/312 (28.53%), Postives = 120/312 (38.46%), Query Frame = 0
Query: 42 LLLLLLLPFLPLVCPCASPPSPLNPPHSPPPSSRFVFSPHRPSPEIIADYLAAI---PPSLPPSL-TPFRYRTLHAEPPYASLGKEGRREGGREGGREGGRVRLVSMEVCLGRGQKTYAKAREALRGWKMHARSPTTGIVRGREGGREGGREGGRVGVVTLARVYGGGAWVMNPCCVAYESFDKQDRNGEGEGGRKGGREGGREGGGPRVWSAVAYTTVGRHLIAGEERMRVIWYPRGRGRKGG------------------REGGG----EDEVWFEIVSVARGNGWVGRLLFPSTQRMQRHFFQEQLRGM 327
+L++ LL LV P AS + P + P + R S + I D L I PP+ P T RY T P + + +G G+K Y A AL W++ S I R G V T A+ YG A +NPC YE D+ + R GRE V++AV Y+TV HL+AGEER V W RKGG EG G +D VWFE+ S +R +G +GRL + + +QR F + M
Sbjct: 1 MLIVALLNLCILVSPHASTAASGVRPSASIPMLKV---GQRHSDDAIFDALGTIKGRPPNHPFVRGTLLRYPTSSMAPSSYMVNHK---------------------RFLIGHGEKAYHFASRALLSWQLINES-LEWIRIDRRGE----------AVTTCAKAYGVSA--INPCLYQYELIDQ-----------RAARPSGRE----VVYTAVGYSTVKGHLLAGEERFTVAW--NQTPRKGGPVSRIFGLRKQRPANDSDSEGDGIESEKDGVWFEVYSYSRPSGVLGRLAAVAVRPLQRRFAADLAAKM 258
BLAST of EWM21063.1 vs. NCBI_GenBank
Match: gi|585102797|gb|EWM22308.1| (protein of unknown function DUF1990 [Nannochloropsis gaditana]) HSP 1 Score: 67.0106 bits (162), Expect = 9.587e-9 Identity = 68/252 (26.98%), Postives = 107/252 (42.46%), Query Frame = 0
Query: 80 PHRPSPEIIADYLAAIPPSLPPSLTPFRYRTLHAEPPYASLGKEGRREGGREGGREGGRVRLVSMEVCLGRGQKTYAKAREALRGWKMHARSPTTGIVRGREGGREGGREGGRVGVVTLARVYGGGAWVMNPCCVAYESFDKQDRNGEGEGGRKGGREGGREGGGPRVWSAVAYTTVGRHLIAGEERMRVIWYPRGRGRKGGREGGGEDEVWFEIVSVARGNGWVGRLLFPSTQRMQRHFFQEQLRGMQFMV 331
PH S + YL A+ F + + +A G+ + R G EG +V+ + V LG+G +TYA A++ + W G G + VV+ R YG W MNP ++ E G++GG +AVA +T+ HL+ GEER +W+ EGG + +VWF+++S ++G +GRLL P + +Q F + R MQ +V
Sbjct: 175 PH--SSRQVQHYLVALRQR------KFNHMYVGVTQEFAPYGEREVEDWLRLKGYEGFKVK--TQRVLLGKGPETYALAKDKIVNWSWGEEVKWVRFSEGEHG----------INVVSQIRTYGL-LWTMNPL--------RKVLCHEKPWGKRGGAV-----------AAVAVSTLRGHLLEGEERF-CVWF----------EGGRQGDVWFDVLSFSKGAFPLGRLLMPVVRPLQNRFLVDVGRAMQKLV 375
BLAST of EWM21063.1 vs. NCBI_GenBank
Match: gi|971512058|dbj|GAQ86156.1| (hypothetical protein KFL_002730140 [Klebsormidium nitens]) HSP 1 Score: 61.6178 bits (148), Expect = 2.228e-7 Identity = 61/226 (26.99%), Postives = 96/226 (42.48%), Query Frame = 0
Query: 138 RVRLVSMEVCLGRGQKTYAKAREALRGWKMH-----ARSPTTGIVRGREGGREGGREGGRVGVVTLARVYGGGAWVMNPCCVAY---------------ESFDKQDRNG-EGEGGRKG---------GREGGREGG-GPRVWSAVAYTTVGRHLIAGEERMRVIWYPRGRGRKGGREGGGEDEVWFEIVSVARGNGWVGRLLFPSTQRMQRHFFQEQLRGMQFMVN 332
R ++ +VC+G G+ + +A++A+R W+ P T I RE RV VV AR +G W +NP + Y ES + RNG GGRK RE G GG + A + T+ HL++GEER V W +D VW++I++ +R ++ +P+ + QR F ++ +R +Q V
Sbjct: 55 RFQIDHNQVCIGSGEAAFQRAKKAVRDWRHFQLGWATVDPDTPI-----------RERERVAVV--ARSFGL-VWTLNPLQILYVDDGTDSPSTSSTREESSTNEKRNGGSRSGGRKARAKVGPGAVEREEGLSGGVSTKARFAYGHGTLKGHLLSGEERFLVEWR-------------DDDSVWYDILAFSRPGHFLAAATYPAARFYQRQFAKQSMRAVQAAVE 253 The following BLAST results are available for this feature:
BLAST of EWM21063.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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