EWM21063.1, cds9610 (CDS) Nannochloropsis gaditana

Overview
NameEWM21063.1
Unique Namecds9610
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:39104..40105 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21063.1
Productprotein of unknown function DUF1990
Partialtrue
Orig transcript idgnl|cribi|Naga_101454g1.2322.mrna
GbkeyCDS
End range.
End range40105
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:39104..40105 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR018960DUF1990
Homology
BLAST of EWM21063.1 vs. NCBI_GenBank
Match: gi|585101089|gb|EWM21063.1| (protein of unknown function DUF1990, partial [Nannochloropsis gaditana])

HSP 1 Score: 662.529 bits (1708), Expect = 0.000e+0
Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 0
Query:    1 NFLISCRKRSRRGGGAYAEFEIRMPTSFCNLSVHLVPCLVVLLLLLLLPFLPLVCPCASPPSPLNPPHSPPPSSRFVFSPHRPSPEIIADYLAAIPPSLPPSLTPFRYRTLHAEPPYASLGKEGRREGGREGGREGGRVRLVSMEVCLGRGQKTYAKAREALRGWKMHARSPTTGIVRGREGGREGGREGGRVGVVTLARVYGGGAWVMNPCCVAYESFDKQDRNGEGEGGRKGGREGGREGGGPRVWSAVAYTTVGRHLIAGEERMRVIWYPRGRGRKGGREGGGEDEVWFEIVSVARGNGWVGRLLFPSTQRMQRHFFQEQLRGMQFMVNT 333
            NFLISCRKRSRRGGGAYAEFEIRMPTSFCNLSVHLVPCLVVLLLLLLLPFLPLVCPCASPPSPLNPPHSPPPSSRFVFSPHRPSPEIIADYLAAIPPSLPPSLTPFRYRTLHAEPPYASLGKEGRREGGREGGREGGRVRLVSMEVCLGRGQKTYAKAREALRGWKMHARSPTTGIVRGREGGREGGREGGRVGVVTLARVYGGGAWVMNPCCVAYESFDKQDRNGEGEGGRKGGREGGREGGGPRVWSAVAYTTVGRHLIAGEERMRVIWYPRGRGRKGGREGGGEDEVWFEIVSVARGNGWVGRLLFPSTQRMQRHFFQEQLRGMQFMVNT
Sbjct:    1 NFLISCRKRSRRGGGAYAEFEIRMPTSFCNLSVHLVPCLVVLLLLLLLPFLPLVCPCASPPSPLNPPHSPPPSSRFVFSPHRPSPEIIADYLAAIPPSLPPSLTPFRYRTLHAEPPYASLGKEGRREGGREGGREGGRVRLVSMEVCLGRGQKTYAKAREALRGWKMHARSPTTGIVRGREGGREGGREGGRVGVVTLARVYGGGAWVMNPCCVAYESFDKQDRNGEGEGGRKGGREGGREGGGPRVWSAVAYTTVGRHLIAGEERMRVIWYPRGRGRKGGREGGGEDEVWFEIVSVARGNGWVGRLLFPSTQRMQRHFFQEQLRGMQFMVNT 333          
BLAST of EWM21063.1 vs. NCBI_GenBank
Match: gi|299473044|emb|CBN77437.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 105.531 bits (262), Expect = 1.228e-22
Identity = 82/225 (36.44%), Postives = 103/225 (45.78%), Query Frame = 0
Query:  148 LGRGQKTYAKAREALRGWKMHARSPTTGIVRGREGGREGGREGGRVGVVTLARVYGGGAWVMNPCCVAYESFDKQDR--------------NGEGEGGRKGGR----------EGGREGGGPRVW-------------SAVAYTTVGRHLIAGEERMRVIWY--PRGRGRKGGREGGGEDEVWFEIVSVARGNGWVGRLLFPSTQRMQRHFFQEQLRGMQFMVNT 333
            LG G++TYA+ REAL  W+MH  S    I  G+   R   +      +VT+A+   G  W +NPC V YE  D   R              +GE        R           G R    P  W             SAVAY T   HLI GEERMRV+ +  P           GG+D VWFE+ SV+RG G VG L+FP  Q MQR FF+EQ   M+ +VN+
Sbjct:   85 LGSGKETYARGREALLRWQMHEGSSWARIFLGQRPPRPALQRN----LVTIAKACAGLVWCINPCQVLYERNDVALRFIAPPGADANRSLDDGEARPVENTKRVMGGGGGALWAGKRPTSAPS-WASFLPGVKHKGRQSAVAYATKMGHLIQGEERMRVLHFCGP-----------GGDDSVWFEVYSVSRGAGLVGGLVFPFVQSMQRRFFREQAETMKRVVNS 293          
BLAST of EWM21063.1 vs. NCBI_GenBank
Match: gi|551568271|ref|XP_005770095.1| (hypothetical protein EMIHUDRAFT_243855 [Emiliania huxleyi CCMP1516] >gi|551617943|ref|XP_005789789.1| hypothetical protein EMIHUDRAFT_225501 [Emiliania huxleyi CCMP1516] >gi|485621213|gb|EOD17666.1| hypothetical protein EMIHUDRAFT_243855 [Emiliania huxleyi CCMP1516] >gi|485643345|gb|EOD37360.1| hypothetical protein EMIHUDRAFT_225501 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 73.559 bits (179), Expect = 1.403e-11
Identity = 61/193 (31.61%), Postives = 88/193 (45.60%), Query Frame = 0
Query:  139 VRLVSMEVCLGRGQKTYAKAREALRGWKMHARSPTTGIVRGREGGREGGREGGRVGVVTLARVYGGGA---WVMNPCCVAYESFDKQDRNGEGEGGRKGGREGGREGGGPRVWSAVAYTTVGRHLIAGEERMRVIWYPRGRGRKGGREGGGEDEVWFEIVSVARGNGWVGRLLFPSTQRMQRHFFQEQLRGMQ 328
            +R+++M V LG G+  + +AR  L  W+MH  S  + ++     GR          +VTLA +        WV NPC        ++                           +V Y+T+  HL+ GEE+M V+W          RE    DEV FE+VS +RG G +G+LLFP+    QR FF+EQ R MQ
Sbjct:   59 LRVIAMRVPLGHGRACWRRARRRLLSWEMHEGSTWSAVLVEDPPGR---------SLVTLAALPSPRLPLLWVSNPCRAVRRRVGRRR-------------------------CSVGYSTLSGHLLEGEEKMDVVW---------SRE---TDEVAFEVVSHSRGAGPLGKLLFPALSSTQRRFFREQCRCMQ 205          
BLAST of EWM21063.1 vs. NCBI_GenBank
Match: gi|873220614|emb|CEM35385.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 70.8626 bits (172), Expect = 1.950e-10
Identity = 89/312 (28.53%), Postives = 120/312 (38.46%), Query Frame = 0
Query:   42 LLLLLLLPFLPLVCPCASPPSPLNPPHSPPPSSRFVFSPHRPSPEIIADYLAAI---PPSLPPSL-TPFRYRTLHAEPPYASLGKEGRREGGREGGREGGRVRLVSMEVCLGRGQKTYAKAREALRGWKMHARSPTTGIVRGREGGREGGREGGRVGVVTLARVYGGGAWVMNPCCVAYESFDKQDRNGEGEGGRKGGREGGREGGGPRVWSAVAYTTVGRHLIAGEERMRVIWYPRGRGRKGG------------------REGGG----EDEVWFEIVSVARGNGWVGRLLFPSTQRMQRHFFQEQLRGM 327
            +L++ LL    LV P AS  +    P +  P  +      R S + I D L  I   PP+ P    T  RY T    P    +  +                        +G G+K Y  A  AL  W++   S    I   R G            V T A+ YG  A  +NPC   YE  D+           +  R  GRE     V++AV Y+TV  HL+AGEER  V W      RKGG                   EG G    +D VWFE+ S +R +G +GRL   + + +QR F  +    M
Sbjct:    1 MLIVALLNLCILVSPHASTAASGVRPSASIPMLKV---GQRHSDDAIFDALGTIKGRPPNHPFVRGTLLRYPTSSMAPSSYMVNHK---------------------RFLIGHGEKAYHFASRALLSWQLINES-LEWIRIDRRGE----------AVTTCAKAYGVSA--INPCLYQYELIDQ-----------RAARPSGRE----VVYTAVGYSTVKGHLLAGEERFTVAW--NQTPRKGGPVSRIFGLRKQRPANDSDSEGDGIESEKDGVWFEVYSYSRPSGVLGRLAAVAVRPLQRRFAADLAAKM 258          
BLAST of EWM21063.1 vs. NCBI_GenBank
Match: gi|585102797|gb|EWM22308.1| (protein of unknown function DUF1990 [Nannochloropsis gaditana])

HSP 1 Score: 67.0106 bits (162), Expect = 9.587e-9
Identity = 68/252 (26.98%), Postives = 107/252 (42.46%), Query Frame = 0
Query:   80 PHRPSPEIIADYLAAIPPSLPPSLTPFRYRTLHAEPPYASLGKEGRREGGREGGREGGRVRLVSMEVCLGRGQKTYAKAREALRGWKMHARSPTTGIVRGREGGREGGREGGRVGVVTLARVYGGGAWVMNPCCVAYESFDKQDRNGEGEGGRKGGREGGREGGGPRVWSAVAYTTVGRHLIAGEERMRVIWYPRGRGRKGGREGGGEDEVWFEIVSVARGNGWVGRLLFPSTQRMQRHFFQEQLRGMQFMV 331
            PH  S   +  YL A+          F +  +     +A  G+    +  R  G EG +V+  +  V LG+G +TYA A++ +  W             G  G          + VV+  R YG   W MNP         ++    E   G++GG             +AVA +T+  HL+ GEER   +W+          EGG + +VWF+++S ++G   +GRLL P  + +Q  F  +  R MQ +V
Sbjct:  175 PH--SSRQVQHYLVALRQR------KFNHMYVGVTQEFAPYGEREVEDWLRLKGYEGFKVK--TQRVLLGKGPETYALAKDKIVNWSWGEEVKWVRFSEGEHG----------INVVSQIRTYGL-LWTMNPL--------RKVLCHEKPWGKRGGAV-----------AAVAVSTLRGHLLEGEERF-CVWF----------EGGRQGDVWFDVLSFSKGAFPLGRLLMPVVRPLQNRFLVDVGRAMQKLV 375          
BLAST of EWM21063.1 vs. NCBI_GenBank
Match: gi|971512058|dbj|GAQ86156.1| (hypothetical protein KFL_002730140 [Klebsormidium nitens])

HSP 1 Score: 61.6178 bits (148), Expect = 2.228e-7
Identity = 61/226 (26.99%), Postives = 96/226 (42.48%), Query Frame = 0
Query:  138 RVRLVSMEVCLGRGQKTYAKAREALRGWKMH-----ARSPTTGIVRGREGGREGGREGGRVGVVTLARVYGGGAWVMNPCCVAY---------------ESFDKQDRNG-EGEGGRKG---------GREGGREGG-GPRVWSAVAYTTVGRHLIAGEERMRVIWYPRGRGRKGGREGGGEDEVWFEIVSVARGNGWVGRLLFPSTQRMQRHFFQEQLRGMQFMVN 332
            R ++   +VC+G G+  + +A++A+R W+          P T I           RE  RV VV  AR +G   W +NP  + Y               ES   + RNG    GGRK           RE G  GG   +   A  + T+  HL++GEER  V W               +D VW++I++ +R   ++    +P+ +  QR F ++ +R +Q  V 
Sbjct:   55 RFQIDHNQVCIGSGEAAFQRAKKAVRDWRHFQLGWATVDPDTPI-----------RERERVAVV--ARSFGL-VWTLNPLQILYVDDGTDSPSTSSTREESSTNEKRNGGSRSGGRKARAKVGPGAVEREEGLSGGVSTKARFAYGHGTLKGHLLSGEERFLVEWR-------------DDDSVWYDILAFSRPGHFLAAATYPAARFYQRQFAKQSMRAVQAAVE 253          
The following BLAST results are available for this feature:
BLAST of EWM21063.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585101089|gb|EWM21063.1|0.000e+0100.00protein of unknown function DUF1990, partial [Nann... [more]
gi|299473044|emb|CBN77437.1|1.228e-2236.44conserved unknown protein [Ectocarpus siliculosus][more]
gi|551568271|ref|XP_005770095.1|1.403e-1131.61hypothetical protein EMIHUDRAFT_243855 [Emiliania ... [more]
gi|873220614|emb|CEM35385.1|1.950e-1028.53unnamed protein product [Vitrella brassicaformis C... [more]
gi|585102797|gb|EWM22308.1|9.587e-926.98protein of unknown function DUF1990 [Nannochlorops... [more]
gi|971512058|dbj|GAQ86156.1|2.228e-726.99hypothetical protein KFL_002730140 [Klebsormidium ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9641rna9641Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications