rna9640, rna9640 (mRNA) Nannochloropsis gaditana

Overview
Namerna9640
Unique Namerna9640
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length429
Alignment locationKK037255.1:36210..36777 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102637g1.1317.mrna
Orig protein idgnl|cribi|Naga_102637g1.1317
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:36210..36777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102637g1gene9360Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9640rna9640-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21064.1cds9609Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9640 ID=rna9640|Name=rna9640|organism=Nannochloropsis gaditana|type=mRNA|length=429bp
ATGCATGATCCTCCCATACTCGGCGGTGATCCTGCCAGCAGCTTTTTGAT
AAATTTCGGGCACAATGAACAGGCGACCGGGGTGAGAAAGCATCATCCCA
AAACCTACGAAGAAGTGGCAAGTCTGGTCCGTACAGTTAGATCCCAAGGC
GGGAAGCTGCGGCCTATGGGAGCCCTCCATTCCTGGAGCAACATCTTCCC
TGAGGATGATACGGACGTCCTTTTCCTGGATCAATTTAAAAAAATCTCGC
AGGACCCTACGGACTATACGCGCGTCACCGTCCAGGCGGGGGTGTTACAA
AGCGAACTCGCCGACTGGGCGGACAGCGCCGAGCGAGGTCCTGGGCGATT
TTCTTACTTGAGTCAGGCCACTGTGGTGACAGGGGTGACCTTTGTGGGGG
CCTGCCAGACCGCGTCGCACGGGAGGTAA
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protein sequence of rna9640

>rna9640-protein ID=rna9640-protein|Name=rna9640|organism=Nannochloropsis gaditana|type=polypeptide|length=132bp
VHYPPLPPFLPPSLPQVLAACLGMCGIILEVTARFDPSTDAVQVTRGRRP
LHDLLPPRSVPINASFNPLRDLIEVEGFHGGALSYAPYNSAPEIGVKLEA
SRIEEYQAKVLPSLPPSLPPSLPRVAPPTLPL
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mRNA from alignment at KK037255.1:36210..36777+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9640 ID=rna9640|Name=rna9640|organism=Nannochloropsis gaditana|type=mRNA|length=568bp|location=Sequence derived from alignment at KK037255.1:36210..36777+ (Nannochloropsis gaditana)
GTCCActaccctcccctccctcccttcctccctccctccctccctcaggt
tCTCGCCGCCTGCCTGGGCATGTGCGGTATCATTCTGGAGGTGACCGCTC
GCTTCGATCCGTCCACGGACGCCGTGCAAGTCACCCGGGGCCGGCGGCCC
TTgcacgacctcctccctccccgctcggTCCCCATCAACGCTTCTTTCAA
CCCCTTGCGGGATTTGATTGAGGTGGAAGGCTTCCACGGCGGGGCCTTGT
CCTACGCGCCCTACAACAGCGCGCCCGAGATTGGCGTCAAGCTCGAAGCG
AGTCGGATCGAGGAATACCAGGCGAaggtccttccctccctccctccctc
cctccctccctccctccctcgagtggctcctcccacccttcctctctagt
ctcttcttctttctgtCCTTTATTCATGGTCCTTCTGGCAGCGGTGTCTT
AGCCCTGGGGTCTCGCCCTtacccctttcccctccctttcttccttcggt
ttcttccttttttcctctttcttggtTTTTCCCCAtcgcttttttttcct
ccttcatcccacgactcc
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Coding sequence (CDS) from alignment at KK037255.1:36210..36777+

>rna9640 ID=rna9640|Name=rna9640|organism=Nannochloropsis gaditana|type=CDS|length=399bp|location=Sequence derived from alignment at KK037255.1:36210..36777+ (Nannochloropsis gaditana)
GTCCActaccctcccctccctcccttcctccctccctccctccctcaggt
tCTCGCCGCCTGCCTGGGCATGTGCGGTATCATTCTGGAGGTGACCGCTC
GCTTCGATCCGTCCACGGACGCCGTGCAAGTCACCCGGGGCCGGCGGCCC
TTgcacgacctcctccctccccgctcggTCCCCATCAACGCTTCTTTCAA
CCCCTTGCGGGATTTGATTGAGGTGGAAGGCTTCCACGGCGGGGCCTTGT
CCTACGCGCCCTACAACAGCGCGCCCGAGATTGGCGTCAAGCTCGAAGCG
AGTCGGATCGAGGAATACCAGGCGAaggtccttccctccctccctccctc
cctccctccctccctccctcgagtggctcctcccacccttcctctctag
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Synonyms
Publications