EWM21064.1, cds9609 (CDS) Nannochloropsis gaditana

Overview
NameEWM21064.1
Unique Namecds9609
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:36210..36608 +

Link to JBrowse

Properties
Property NameValue
Start range36210
Start range.
Protein idEWM21064.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_102637g1.1317.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:36210..36608 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM21064.1 vs. NCBI_GenBank
Match: gi|585101092|gb|EWM21064.1| (hypothetical protein Naga_102637g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 257.684 bits (657), Expect = 8.213e-87
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0
Query:    1 VHYPPLPPFLPPSLPQVLAACLGMCGIILEVTARFDPSTDAVQVTRGRRPLHDLLPPRSVPINASFNPLRDLIEVEGFHGGALSYAPYNSAPEIGVKLEASRIEEYQAKVLPSLPPSLPPSLPRVAPPTLPL 132
            VHYPPLPPFLPPSLPQVLAACLGMCGIILEVTARFDPSTDAVQVTRGRRPLHDLLPPRSVPINASFNPLRDLIEVEGFHGGALSYAPYNSAPEIGVKLEASRIEEYQAKVLPSLPPSLPPSLPRVAPPTLPL
Sbjct:    1 VHYPPLPPFLPPSLPQVLAACLGMCGIILEVTARFDPSTDAVQVTRGRRPLHDLLPPRSVPINASFNPLRDLIEVEGFHGGALSYAPYNSAPEIGVKLEASRIEEYQAKVLPSLPPSLPPSLPRVAPPTLPL 132          
BLAST of EWM21064.1 vs. NCBI_GenBank
Match: gi|585103699|gb|EWM22966.1| (fad linked oxidase domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 104.375 bits (259), Expect = 1.837e-23
Identity = 50/92 (54.35%), Postives = 65/92 (70.65%), Query Frame = 0
Query:   16 QVLAACLGMCGIILEVTARFDPSTDAVQVTRGRRPLHDLLPPRSVPINASFNPLRDLIEVEGFHGGALSYAPYNSAPEIGVKLEASRIEEYQ 107
            +V+AACLGMCGI+L+VT RF+P T A  VT+ +   +DL PPR VPIN S+NPL+  IE     GGA++Y+PYNSA     KL+ + IEEY 
Sbjct:  251 RVMAACLGMCGIVLDVTVRFNPDTSATMVTQTKMQYYDLFPPRGVPINDSYNPLKHFIESHA--GGAINYSPYNSALLRSAKLDVNMIEEYH 340          
BLAST of EWM21064.1 vs. NCBI_GenBank
Match: gi|553179540|ref|XP_005852716.1| (fad-linked oxidoreductase [Nannochloropsis gaditana CCMP526] >gi|422295817|gb|EKU23116.1| fad-linked oxidoreductase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 100.908 bits (250), Expect = 2.001e-22
Identity = 50/92 (54.35%), Postives = 65/92 (70.65%), Query Frame = 0
Query:   16 QVLAACLGMCGIILEVTARFDPSTDAVQVTRGRRPLHDLLPPRSVPINASFNPLRDLIEVEGFHGGALSYAPYNSAPEIGVKLEASRIEEYQ 107
            +V+AACLGMCGI+L+VT RF+P T A  VT+ +   +DL PPR VPIN S+NPL+  IE     GGA++Y+PYNSA     KL+ + IEEY 
Sbjct:  120 RVMAACLGMCGIVLDVTVRFNPDTSATMVTQTKMQYYDLFPPRGVPINDSYNPLKHFIESHA--GGAINYSPYNSALLRSAKLDVNMIEEYH 209          
BLAST of EWM21064.1 vs. NCBI_GenBank
Match: gi|585108367|gb|EWM26357.1| (fad-linked oxidoreductase [Nannochloropsis gaditana])

HSP 1 Score: 81.2629 bits (199), Expect = 2.300e-15
Identity = 47/92 (51.09%), Postives = 57/92 (61.96%), Query Frame = 0
Query:   17 VLAACLGMCGIILEVTARFDPSTDAVQVTRGRRPLHDLLPPRSVPINASFNPLRDLIEVEGFHGGALSYAPYNSAPEIGVKLEASRIEEYQA 108
            V  ACLGMCGIIL+VT RF P T  V VT+ + PL D   PR+   N+SFNPL+D I      GGA++YA YNSA   G  L+  + E Y A
Sbjct:  238 VYTACLGMCGIILDVTLRFSPETTGVTVTQIKAPLKDFF-PRACETNSSFNPLKDWI--NSHVGGAMNYATYNSAILSG-PLDPKKAEIYTA 325          
The following BLAST results are available for this feature:
BLAST of EWM21064.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585101092|gb|EWM21064.1|8.213e-87100.00hypothetical protein Naga_102637g1, partial [Nanno... [more]
gi|585103699|gb|EWM22966.1|1.837e-2354.35fad linked oxidase domain-containing protein [Nann... [more]
gi|553179540|ref|XP_005852716.1|2.001e-2254.35fad-linked oxidoreductase [Nannochloropsis gaditan... [more]
gi|585108367|gb|EWM26357.1|2.300e-1551.09fad-linked oxidoreductase [Nannochloropsis gaditan... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9640rna9640Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications