rna9639, rna9639 (mRNA) Nannochloropsis gaditana

Overview
Namerna9639
Unique Namerna9639
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length971
Alignment locationKK037255.1:34256..35533 +

Link to JBrowse

Properties
Property NameValue
Productfad-linked oxidoreductase
Orig transcript idgnl|cribi|Naga_101180g1.9042.mrna
Orig protein idgnl|cribi|Naga_101180g1.9042
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:34256..35533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101180g1gene9359Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9639rna9639-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21066.1cds9608Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9639 ID=rna9639|Name=rna9639|organism=Nannochloropsis gaditana|type=mRNA|length=971bp
CATTATCCCCGTGCTTCACTCGGTGCTGCTGATCCTCCTTGCTCTATTCC
CCTCCCCTCCTCCTGCTACCACAGCTGCTTGGCCACCAATGTTAAGTGTG
CCTTTCGTTGGTGTCATCGATAAAATTGAGAGCTGAGATGTATTTCCCCG
GGGGCGGCGGAGGAAGAGAACAGCGTGGTGGCGGCAGACTCGACCCTGCG
GATGCGTGGAGGACTTGGTGGGAGGGTGAAGGAGGAGGGCAAGAAGGAGG
AGGAGGAGGAGGAGGAGGGTTCGGGTTTTTCGCCGGGTTGGGGGCACACG
GGGTCCCTTTCGCTGGAATGAGTCCTCCTTTTGGTGGGTACCGGACTGGG
ATCATGGAGTTTCCCCTCCCTTTATTGCACTTGCCACGCCTGATATCCTT
TCCTACCCGCCACCGTCCTTCTCCCTCTCGGATGTGCACGGGCAGATCAA
GTCCTCTCCTCCCTCCCTCCTCTTCCGATGATCCCCTGGGCTCCTCACAC
TTCACCGTCCTTCTTCTTGCCCTCCCCCCCGTCTGTTTCCTCCCCCTGCC
CCTCCCTCTCTTCGTCTTCTTTCCTCCCCTCCCCCACCCTCTCGTCTTCT
TCTTTCCTCAGGCATCCCCGTGCCCCGGGAGCCGAGCGAGAGAGGGCCGG
AACGTGAGCAGGGAAGCGGGTGAAGGAGGAGGGGAGACGAGGGATGGTAG
CGAGGGGAGGGAGGGAAGTAGGTGCCTTCTCCACCTTCGCTTCCTGACCT
TCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTTAGGGCCTCT
TCAAGAGAGACCACCTCCTCCTGCGTCTGCTCGGACGCTCAATCGGATGC
CGGGTAAGGAGGGAGAGAGGGAGGGATGGAGGGATGGAGGGATGGCAAGA
GGACATAAAGAAGGTAACGGCCCCGAGGGAGTGAATGCGGGAGAGGTGAT
AGATATTGCGCATCCTTTCGG
back to top

protein sequence of rna9639

>rna9639-protein ID=rna9639-protein|Name=rna9639|organism=Nannochloropsis gaditana|type=polypeptide|length=142bp
MHDPPILGGDPASSFLINFGHNEQATGVRKHHPKTYEEVASLVRTVRSQG
GKLRPMGALHSWSNIFPEDDTDVLFLDQFKKISQDPTDYTRVTVQAGVLQ
SELADWADSAERGPGRFSYLSQATVVTGVTFVGACQTASHGR
back to top

mRNA from alignment at KK037255.1:34256..35533+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9639 ID=rna9639|Name=rna9639|organism=Nannochloropsis gaditana|type=mRNA|length=1278bp|location=Sequence derived from alignment at KK037255.1:34256..35533+ (Nannochloropsis gaditana)
ATGCATGTTCTGTATTTTCAAAGGCGAACGATCGCGGTCATTTTGCTcct
gcacctccctctcgtcgccACGCAAGGCCATCCTTCCCTACGTCGGGCTT
CTGCATCCGCAGCCGAcggctcgctccctccttttaCACCGACAGTGACA
GAGACGCCCGTCATAGACACGCATGAGGGAGACAAATTTGTCCTACCTCT
AACGCAGTCACTCTCTGAGCAGGATCCTCCCATACTCGGCGGTGATCCTG
CCAGCAGCTTTTTGATAAATTTCGGGCACAATGAACAGGCGACCGGGGTG
AGAAAGCATCATCCCAAAACCTACGAAGAAGTGGCAAGGTAAAAGCAAAA
CGCACCCATCGGATCTCAAAGGAAGAATGGGGGCTTGAACCACCGCACAT
GCTCTCTTagccctttgccctccttgttatcccctccctcggtgtCAGTC
TGGTCCGTACAGTTAGATCCCAAGGCGGGAAGCTGCGGCCTATGGGAGCC
CTCCATTCCTGGAGCAACATCTTCCCTGAGGATGATACGGACGTCCTTTT
CCTGGATCAATTTAAAAGTAGGGTGTCGGTGGGCCCGGTCGGTGACATTC
TATCTCTCCCTTTGTGCCAAAACGATGACGGCGTCTTGGCACGTCGCTTT
CATTCTGCCTGTTggctgcctctctccctttctatctctctctttttctt
tttcgtcccACATGTGCACGACCACGgacctcccttctttccttcttcct
ctccccccctcttcccctgcagAAATCTCGCAGGACCCTACGGACTATAC
GCGCGTCACCGTCCAGGCGGGGGTGTTACAAAGCGAACTCGCCGACTGGG
CGGACAGCGCCGAGCGAGGTGcgacttcccctcctccctctttctcttcc
cctccctccctccctccctccctcccttgtctccctcctgccccatgTCT
AAAGACGCTCCCGATGGAAGCGTCTTTGGTATCGACAGTGTTCatggccc
ctcctccttttcgttGACAGCAACAGTGTCACATTTTCTCTTTCGCTGGG
TGAAAATCTATGCCAGCCGGACGCATCGTCTCCCTCATCGCTCTCAAGGA
Caggtccctctcccctccctcctccccctccctcctccccctccctcctc
cccctccctccttccctccctccctccctccctcaggtcctGGGCGATTT
TCTTACTTGAGTCAGGCCACTGTGGTGACAGGGGTGACCTTTGTGGGGGC
CTGCCAGACCGCGTCGCACGGGAGgtaa
back to top

Coding sequence (CDS) from alignment at KK037255.1:34256..35533+

>rna9639 ID=rna9639|Name=rna9639|organism=Nannochloropsis gaditana|type=CDS|length=2145bp|location=Sequence derived from alignment at KK037255.1:34256..35533+ (Nannochloropsis gaditana)
ATGCATGATCCTCCCATACTCGGCGGTGATCCTGCCAGCAGCTTTTTGAT
AAATTTCGGGCACAATGAACAGGCGACCGGGGTGAGAAAGCATCATCCCA
AAACCTACGAAGAAGTGGCAAGTCTGGTCCGTACAGTTAGATCCCAAGGC
GGGAAGCTGCGGCCTATGGGAGCCCTCCATTCCTGGAGCAACATCTTCCC
TGAGGATGATACGGACGTCCTTTTCCTGGATCAATTTAAAAAAATCTCGC
AGGACCCTACGGACTATACGCGCGTCACCGTCCAGGCGGGGGTGTTACAA
AGCGAACTCGCCGACTGGGCGGACAGCGCCGAGCGAGgtcctGGGCGATT
TTCTTACTTGAGTCAGGCCACTGTGGTGACAGGGGTGACCTTTGTGGGGG
CCTGCCAGACCGCGTCGCACGGGAGgtaaATGCATGATCCTCCCATACTC
GGCGGTGATCCTGCCAGCAGCTTTTTGATAAATTTCGGGCACAATGAACA
GGCGACCGGGGTGAGAAAGCATCATCCCAAAACCTACGAAGAAGTGGCAA
GTCTGGTCCGTACAGTTAGATCCCAAGGCGGGAAGCTGCGGCCTATGGGA
GCCCTCCATTCCTGGAGCAACATCTTCCCTGAGGATGATACGGACGTCCT
TTTCCTGGATCAATTTAAAAAAATCTCGCAGGACCCTACGGACTATACGC
GCGTCACCGTCCAGGCGGGGGTGTTACAAAGCGAACTCGCCGACTGGGCG
GACAGCGCCGAGCGAGgtcctGGGCGATTTTCTTACTTGAGTCAGGCCAC
TGTGGTGACAGGGGTGACCTTTGTGGGGGCCTGCCAGACCGCGTCGCACG
GGAGgtaaATGCATGATCCTCCCATACTCGGCGGTGATCCTGCCAGCAGC
TTTTTGATAAATTTCGGGCACAATGAACAGGCGACCGGGGTGAGAAAGCA
TCATCCCAAAACCTACGAAGAAGTGGCAAGTCTGGTCCGTACAGTTAGAT
CCCAAGGCGGGAAGCTGCGGCCTATGGGAGCCCTCCATTCCTGGAGCAAC
ATCTTCCCTGAGGATGATACGGACGTCCTTTTCCTGGATCAATTTAAAAA
AATCTCGCAGGACCCTACGGACTATACGCGCGTCACCGTCCAGGCGGGGG
TGTTACAAAGCGAACTCGCCGACTGGGCGGACAGCGCCGAGCGAGgtcct
GGGCGATTTTCTTACTTGAGTCAGGCCACTGTGGTGACAGGGGTGACCTT
TGTGGGGGCCTGCCAGACCGCGTCGCACGGGAGgtaaATGCATGATCCTC
CCATACTCGGCGGTGATCCTGCCAGCAGCTTTTTGATAAATTTCGGGCAC
AATGAACAGGCGACCGGGGTGAGAAAGCATCATCCCAAAACCTACGAAGA
AGTGGCAAGTCTGGTCCGTACAGTTAGATCCCAAGGCGGGAAGCTGCGGC
CTATGGGAGCCCTCCATTCCTGGAGCAACATCTTCCCTGAGGATGATACG
GACGTCCTTTTCCTGGATCAATTTAAAAAAATCTCGCAGGACCCTACGGA
CTATACGCGCGTCACCGTCCAGGCGGGGGTGTTACAAAGCGAACTCGCCG
ACTGGGCGGACAGCGCCGAGCGAGgtcctGGGCGATTTTCTTACTTGAGT
CAGGCCACTGTGGTGACAGGGGTGACCTTTGTGGGGGCCTGCCAGACCGC
GTCGCACGGGAGgtaaATGCATGATCCTCCCATACTCGGCGGTGATCCTG
CCAGCAGCTTTTTGATAAATTTCGGGCACAATGAACAGGCGACCGGGGTG
AGAAAGCATCATCCCAAAACCTACGAAGAAGTGGCAAGTCTGGTCCGTAC
AGTTAGATCCCAAGGCGGGAAGCTGCGGCCTATGGGAGCCCTCCATTCCT
GGAGCAACATCTTCCCTGAGGATGATACGGACGTCCTTTTCCTGGATCAA
TTTAAAAAAATCTCGCAGGACCCTACGGACTATACGCGCGTCACCGTCCA
GGCGGGGGTGTTACAAAGCGAACTCGCCGACTGGGCGGACAGCGCCGAGC
GAGgtcctGGGCGATTTTCTTACTTGAGTCAGGCCACTGTGGTGACAGGG
GTGACCTTTGTGGGGGCCTGCCAGACCGCGTCGCACGGGAGgtaa
back to top
Synonyms
Publications